Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012273.1 Kokia drynarioides strain JFW-HI SEQ_127274, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 958

Length: 1597
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.29

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:679 original size:29 final size:29

Alignment explanation


    Indices: 618--704  Score: 95
    Period size: 29  Copynumber: 3.0  Consensus size: 29

        608 GTCGAATTAG

                *               *         
        618 AGATTCAGCTACAGATGCAGTCATG-TAAC
          1 AGATACAGCTACAGATGCAGACATGAT-AC

                 *      *               *
        647 AGATATAGCTACGGATGCAGACATGATAT
          1 AGATACAGCTACAGATGCAGACATGATAC

                    *  *                 
        676 AGATACAGTTATAGATGCAGACATGATAC
          1 AGATACAGCTACAGATGCAGACATGATAC

        705 CCCCATCTGT


Statistics
Matches: 47,  Mismatches: 10, Indels: 2
        0.80            0.17        0.03

Matches are distributed among these distances:
  29   46  0.98
  30    1  0.02

ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24


Consensus pattern (29 bp):   
AGATACAGCTACAGATGCAGACATGATAC

Found at i:942 original size:29 final size:29

Alignment explanation


    Indices: 881--967  Score: 95
    Period size: 29  Copynumber: 3.0  Consensus size: 29

        871 GTCGAATTAG

                *               *         
        881 AGATTCAGCTACAGATGCAGTCATG-TAAC
          1 AGATACAGCTACAGATGCAGACATGAT-AC

                 *      *               *
        910 AGATATAGCTACGGATGCAGACATGATAT
          1 AGATACAGCTACAGATGCAGACATGATAC

                    *  *                 
        939 AGATACAGTTATAGATGCAGACATGATAC
          1 AGATACAGCTACAGATGCAGACATGATAC

        968 CCCCATCTGT


Statistics
Matches: 47,  Mismatches: 10, Indels: 2
        0.80            0.17        0.03

Matches are distributed among these distances:
  29   46  0.98
  30    1  0.02

ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24


Consensus pattern (29 bp):   
AGATACAGCTACAGATGCAGACATGATAC
Done.