Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012279.1 Kokia drynarioides strain JFW-HI SEQ_127280, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2611
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36


Found at i:1745 original size:28 final size:27

Alignment explanation


    Indices: 1699--1753  Score: 85
    Period size: 28  Copynumber: 2.0  Consensus size: 27

       1689 TATATCATGA

                                        
       1699 ATGATATAAATAATCTTTAAATTTTTAT
          1 ATGATATAAATAATCTTT-AATTTTTAT

                                        
       1727 ATGATATAAATACAT-TTTAATTTTTAT
          1 ATGATATAAATA-ATCTTTAATTTTTAT

       1754 TTAAAATGAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  27    9  0.35
  28   15  0.58
  29    2  0.08

ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51


Consensus pattern (27 bp):   
ATGATATAAATAATCTTTAATTTTTAT
Done.