Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012283.1 Kokia drynarioides strain JFW-HI SEQ_127284, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39158
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Found at i:4453 original size:16 final size:17
Alignment explanation
Indices: 4386--4458 Score: 53
Period size: 16 Copynumber: 4.2 Consensus size: 17
4376 AAATAATAAA
4386 TTAT-TTTTTATAAATT
1 TTATATTTTTATAAATT
* *
4402 TTATGTTTTCTAATTAATT
1 TTATATTTT-T-ATAAATT
*
4421 TATAATAATTTTCATAAATT
1 T-T-AT-ATTTTTATAAATT
4441 TTAT-TTTTTAT-AATT
1 TTATATTTTTATAAATT
4456 TTA
1 TTA
4459 ATGGTTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
15 7 0.15
16 10 0.22
17 4 0.09
18 3 0.07
19 8 0.17
20 8 0.17
21 2 0.04
22 4 0.09
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (17 bp):
TTATATTTTTATAAATT
Found at i:4475 original size:18 final size:17
Alignment explanation
Indices: 4437--4493 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 17
4427 AATTTTCATA
*
4437 AATTTT-AT-TTTTTAT
1 AATTTTAATGTTTTTTT
4452 AATTTTAATGGTTTTTTT
1 AATTTTAAT-GTTTTTTT
* *
4470 ATTTTTAATTTTTTTTT
1 AATTTTAATGTTTTTTT
4487 ACATTTT
1 A-ATTTT
4494 TTATAATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
15 6 0.18
16 2 0.06
17 8 0.24
18 18 0.53
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.72
Consensus pattern (17 bp):
AATTTTAATGTTTTTTT
Found at i:4492 original size:19 final size:19
Alignment explanation
Indices: 4444--4494 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
4434 ATAAATTTTA
4444 TTTTTTATAA-TTTTAATGG
1 TTTTTT-TAATTTTTAATGG
*
4463 TTTTTTT-ATTTTTAAT-T
1 TTTTTTTAATTTTTAATGG
4480 TTTTTTTACATTTTT
1 TTTTTTTA-ATTTTT
4495 TATAATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 8 0.29
18 8 0.29
19 12 0.43
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.75
Consensus pattern (19 bp):
TTTTTTTAATTTTTAATGG
Found at i:5500 original size:24 final size:24
Alignment explanation
Indices: 5444--5489 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
5434 AAGTCTAATT
*
5444 CTAATCAATGCAAAATATATTAAG
1 CTAATAAATGCAAAATATATTAAG
*
5468 CTAATAAATGCTAAATATATTA
1 CTAATAAATGCAAAATATATTA
5490 TACTACTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.33
Consensus pattern (24 bp):
CTAATAAATGCAAAATATATTAAG
Found at i:6282 original size:16 final size:16
Alignment explanation
Indices: 6248--6316 Score: 56
Period size: 16 Copynumber: 4.6 Consensus size: 16
6238 AGAACATAAT
* *
6248 GTTGACTTTAACCATG
1 GTTGACTTTAATCAAG
*
6264 GTTGACTTTGATCAAG
1 GTTGACTTTAATCAAG
* *
6280 GTTGTCTTTGA-C-A-
1 GTTGACTTTAATCAAG
*
6293 -TTGACTTTAATCAAA
1 GTTGACTTTAATCAAG
6308 GTTGACTTT
1 GTTGACTTT
6317 TTCAAACGTC
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
12 8 0.19
13 1 0.02
14 2 0.05
15 1 0.02
16 31 0.72
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (16 bp):
GTTGACTTTAATCAAG
Found at i:8039 original size:27 final size:27
Alignment explanation
Indices: 8001--8063 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
7991 AAGAAGGCGG
* *
8001 CTCCCCTTTAGTAATAGCATCGACACA
1 CTCCCCCTTAGTAATAGCATCAACACA
**
8028 CTCCCCCTTAGTTGTAGCATCAACACA
1 CTCCCCCTTAGTAATAGCATCAACACA
*
8055 CTCTCCCTT
1 CTCCCCCTT
8064 CAATAAGATG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.24, C:0.38, G:0.10, T:0.29
Consensus pattern (27 bp):
CTCCCCCTTAGTAATAGCATCAACACA
Found at i:10471 original size:10 final size:9
Alignment explanation
Indices: 10449--10492 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
10439 ATTTTATGTT
10449 TTTTAATTAA
1 TTTTAA-TAA
10459 TTTATAATAA
1 TTT-TAATAA
*
10469 TTTTCATAA
1 TTTTAATAA
*
10478 TTTTTATAA
1 TTTTAATAA
10487 TTTTAA
1 TTTTAA
10493 AGTTTTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
9 18 0.60
10 9 0.30
11 3 0.10
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (9 bp):
TTTTAATAA
Found at i:10527 original size:18 final size:20
Alignment explanation
Indices: 10499--10539 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
10489 TTAAAGTTTT
10499 TTTTTTATCA-TTTTTATAA
1 TTTTTTATCATTTTTTATAA
10518 TTTTTT-TCATTTTTTATAA
1 TTTTTTATCATTTTTTATAA
10537 TTT
1 TTT
10540 AAGATTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTTTATCATTTTTTATAA
Found at i:11451 original size:170 final size:171
Alignment explanation
Indices: 11169--11512 Score: 663
Period size: 170 Copynumber: 2.0 Consensus size: 171
11159 TCAACTTTGC
11169 AACGTTTTATCCATTGTTTGTTAAGCATTTTAAGCTTATTTGCATAAAGTTTTGTTTTCTTTATT
1 AACGTTTTATCCATTGTTTGTTAAGCATTTTAAGCTTATTTGCATAAAGTTTTGTTTTCTTTATT
11234 TAAGCTTCATAAATAAAGTTGTTTATTTATGCTTCATTAAG-TTTTTTTTTTTTGTTAAATGCAT
66 TAAGCTTCATAAATAAAGTTGTTTATTTATGCTTCATTAAGTTTTTTTTTTTTTGTTAAATGCAT
*
11298 CTTTGTTTAATAATCTGCATCATTAAGTGCTTTGTTTGTTA
131 ATTTGTTTAATAATCTGCATCATTAAGTGCTTTGTTTGTTA
11339 AACGTTTTATCCATTGTTTGTTAAGCATTTTAAGCTTATTTGCATAAAGTTTTGTTTTCTTTATT
1 AACGTTTTATCCATTGTTTGTTAAGCATTTTAAGCTTATTTGCATAAAGTTTTGTTTTCTTTATT
11404 TAAGCTTCATAAATAAAGTTGTTTATTTATGCTTCATTAAGTTTTTTTTTTTTTTGTTAAATGCA
66 TAAGCTTCATAAATAAAGTTGTTTATTTATGCTTCATTAAG-TTTTTTTTTTTTTGTTAAATGCA
11469 TATTTGTTTAATAATCTGCATCATTAAGTGCTTTGTTTGTTA
130 TATTTGTTTAATAATCTGCATCATTAAGTGCTTTGTTTGTTA
11511 AA
1 AA
11513 TGCATCTTTG
Statistics
Matches: 171, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
170 106 0.62
172 65 0.38
ACGTcount: A:0.25, C:0.10, G:0.12, T:0.53
Consensus pattern (171 bp):
AACGTTTTATCCATTGTTTGTTAAGCATTTTAAGCTTATTTGCATAAAGTTTTGTTTTCTTTATT
TAAGCTTCATAAATAAAGTTGTTTATTTATGCTTCATTAAGTTTTTTTTTTTTTGTTAAATGCAT
ATTTGTTTAATAATCTGCATCATTAAGTGCTTTGTTTGTTA
Found at i:11508 original size:48 final size:48
Alignment explanation
Indices: 11451--11620 Score: 277
Period size: 48 Copynumber: 3.5 Consensus size: 48
11441 TAAGTTTTTT
* * * * *
11451 TTTTTTTTGTTAAATGCATATTTGTTTAATAATCTGCATCATTAAGTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTG
*
11499 CTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTG
*
11547 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATTATTAACTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTG
11595 TTTTGTTTGTTAAATGCATCTTTGTT
1 TTTTGTTTGTTAAATGCATCTTTGTT
11621 AAATGCCTTC
Statistics
Matches: 114, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 114 1.00
ACGTcount: A:0.24, C:0.09, G:0.14, T:0.53
Consensus pattern (48 bp):
TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCATTATTAACTG
Found at i:12148 original size:80 final size:79
Alignment explanation
Indices: 12055--12211 Score: 233
Period size: 80 Copynumber: 2.0 Consensus size: 79
12045 TCATTAAGGA
* * * * * * * *
12055 GAAATGCCATGCCTTTTTAGCTACATTAGATGCTAATGAAGGGACATGACTCATTGGCTTTCCTA
1 GAAATGCCATGCCTTTTAAACTACATCAGATCCTAATGAAGAGACATGACTCAGTAGCTTCCCTA
12120 CAAGAGTTAAAAAC
66 CAAGAGTTAAAAAC
12134 GAAATTGCCATGCCTTTTAAACTACATCAGATCCTAATGAAGAGACATGACTCAGTAGCTTCCCT
1 GAAA-TGCCATGCCTTTTAAACTACATCAGATCCTAATGAAGAGACATGACTCAGTAGCTTCCCT
12199 ACAAGAGTTAAAA
65 ACAAGAGTTAAAA
12212 TGAAATTAGT
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
79 4 0.06
80 65 0.94
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.27
Consensus pattern (79 bp):
GAAATGCCATGCCTTTTAAACTACATCAGATCCTAATGAAGAGACATGACTCAGTAGCTTCCCTA
CAAGAGTTAAAAAC
Found at i:18186 original size:48 final size:48
Alignment explanation
Indices: 18134--18304 Score: 261
Period size: 48 Copynumber: 3.6 Consensus size: 48
18124 GCTTTATCAA
* * * * *
18134 GTTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTGCATCATTAAGT
1 GTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATTATTAACT
*
18182 GTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATTTGCATTATTAACT
1 GTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATTATTAACT
* *
18230 GTTTTATTTGTTAAATGCATCTTTGTTTAGTAAAATGCATTATTAACT
1 GTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATTATTAACT
*
18278 ATTTTGTTTGTTAAATGCATCTTTGTT
1 GTTTTGTTTGTTAAATGCATCTTTGTT
18305 AAATGCCTTG
Statistics
Matches: 113, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 113 1.00
ACGTcount: A:0.25, C:0.09, G:0.13, T:0.53
Consensus pattern (48 bp):
GTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCATTATTAACT
Found at i:18249 original size:28 final size:28
Alignment explanation
Indices: 18217--18297 Score: 70
Period size: 28 Copynumber: 3.2 Consensus size: 28
18207 TTTAGTAATT
18217 TGCATTATTAACTGTTTTATTTGTTAAA
1 TGCATTATTAACTGTTTTATTTGTTAAA
* *
18245 TGCA-TCTT---TG-TTTA---GTAAAA
1 TGCATTATTAACTGTTTTATTTGTTAAA
* *
18265 TGCATTATTAACTATTTTGTTTGTTAAA
1 TGCATTATTAACTGTTTTATTTGTTAAA
18293 TGCAT
1 TGCAT
18298 CTTTGTTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 16
0.64 0.10 0.26
Matches are distributed among these distances:
20 9 0.23
21 3 0.08
23 4 0.10
24 3 0.08
25 3 0.08
27 3 0.08
28 14 0.36
ACGTcount: A:0.28, C:0.09, G:0.12, T:0.51
Consensus pattern (28 bp):
TGCATTATTAACTGTTTTATTTGTTAAA
Found at i:18840 original size:80 final size:80
Alignment explanation
Indices: 18744--18892 Score: 228
Period size: 80 Copynumber: 1.9 Consensus size: 80
18734 GAGAAATGTC
* * *
18744 ATGCCTTTTCAGCTACATCAGATCCTAATAAAGAGACATGACTCATTGGCTTTCC-TACAATAGT
1 ATGCCTTTTCAACTACATCAGATCCTAATAAAGAGACATGACTCATTAGC-TTCCTTACAAGAGT
18808 TAAAAACGAAATTGCT
65 TAAAAACGAAATTGCT
* * *
18824 ATGCCTTTTTAACTACATCAGATCCTAATGAAGAGACATGCCTCATTAGCTTCCTTACAAGAGTT
1 ATGCCTTTTCAACTACATCAGATCCTAATAAAGAGACATGACTCATTAGCTTCCTTACAAGAGTT
18889 AAAA
66 AAAA
18893 TGAAATTAGT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
79 4 0.06
80 58 0.94
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.30
Consensus pattern (80 bp):
ATGCCTTTTCAACTACATCAGATCCTAATAAAGAGACATGACTCATTAGCTTCCTTACAAGAGTT
AAAAACGAAATTGCT
Found at i:20201 original size:29 final size:29
Alignment explanation
Indices: 20144--20671 Score: 112
Period size: 29 Copynumber: 17.8 Consensus size: 29
20134 ATGCTTCGAA
*
20144 AAAAATGGTAATTTTT-GAATGGTTTGGGGTT
1 AAAAATGG-AATTTTTAGAA--GTTCGGGGTT
*
20175 AAAAATGGAATTTTTAGATA-TTCGGGGGT
1 AAAAATGGAATTTTTAGA-AGTTCGGGGTT
* * *
20204 -AAAAT-GATAATTTTGGAAGGTTTGGGGTT
1 AAAAATGGA-ATTTTTAGAA-GTTCGGGGTT
*
20233 AAAAATGAAATTTTTAGACA-TTCGAGGG-T
1 AAAAATGGAATTTTTAGA-AGTTCG-GGGTT
* ** *
20262 -AAAATGGTAATTTTTGGAAGGTTCGACGTC
1 AAAAATGG-AATTTTTAGAA-GTTCGGGGTT
**
20292 AAAAATGGAATTTTTA-AACATCTGGGG-T
1 AAAAATGGAATTTTTAGAAGTTC-GGGGTT
* ** *
20320 -AAAATGGTAA-TTTTGGAAAGTTAAGGGTC
1 AAAAATGG-AATTTTTAG-AAGTTCGGGGTT
* ** * *
20349 AAAAATTGAATTTTGGGAAGTTTGGGG-G
1 AAAAATGGAATTTTTAGAAGTTCGGGGTT
* * * ***
20377 AAAAATGTAGTTTTTGAAAAGTTTATGGTT
1 AAAAATGGAATTTTT-AGAAGTTCGGGGTT
* * **
20407 AAAAATGTAA-TTTTGGAAAGTT-TAGGTGT
1 AAAAATGGAATTTTTAG-AAGTTCGGGGT-T
* * *
20436 AAAAATGTAATTTTTGAAAAGTTTGGGAAGTTT
1 AAAAATGGAATTTTT-AGAAGTTCGGG--G-TT
* * * **
20469 GGGGGAAAAATGTAGTTTTTGAAAAGTTTAGGGTT
1 -----AAAAATGGAATTTTT-AGAAGTTCGGGGTT
* * **
20504 AAAAATGTAA-TTTTGGAAAGTT-TAGGTGT
1 AAAAATGGAATTTTTAG-AAGTTCGGGGT-T
* * * *
20533 AAAAATGTAATTTTTGAAAAGTTTGGGGTC
1 AAAAATGGAATTTTT-AGAAGTTCGGGGTT
* *
20563 AAAAATGGAA-TTTTAGAAAGTT-TGGGTC
1 AAAAATGGAATTTTTAG-AAGTTCGGGGTT
20591 AAAAATGGAA-TTTTAGAATGTTCGAGGG-T
1 AAAAATGGAATTTTTAGAA-GTTCG-GGGTT
20620 -AAAATGGAA-TTTTAGAAAGTTCGAGGG-T
1 AAAAATGGAATTTTTAG-AAGTTCG-GGGTT
** *
20648 AAAAATATAATTTTTTGACAGTTC
1 AAAAATGGAATTTTTAGA-AGTTC
20672 AAGGACCTTT
Statistics
Matches: 378, Mismatches: 70, Indels: 99
0.69 0.13 0.18
Matches are distributed among these distances:
27 16 0.04
28 93 0.25
29 112 0.30
30 102 0.27
31 23 0.06
32 1 0.00
33 2 0.01
34 1 0.00
35 2 0.01
36 1 0.00
38 25 0.07
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.35
Consensus pattern (29 bp):
AAAAATGGAATTTTTAGAAGTTCGGGGTT
Found at i:20226 original size:58 final size:58
Alignment explanation
Indices: 20145--20362 Score: 267
Period size: 58 Copynumber: 3.7 Consensus size: 58
20135 TGCTTCGAAA
* * *
20145 AAAATGGTAATTTTTGAATGGTTTGGGGTTAAAAATGGAATTTTTAGATATTCGGGGGT
1 AAAATGGTAATTTTGGAA-GGTTTGGGGTCAAAAATGGAATTTTTAGACATTCGGGGGT
* * * *
20204 AAAATGATAATTTTGGAAGGTTTGGGGTTAAAAATGAAATTTTTAGACATTCGAGGGT
1 AAAATGGTAATTTTGGAAGGTTTGGGGTCAAAAATGGAATTTTTAGACATTCGGGGGT
* ** * *
20262 AAAATGGTAATTTTTGGAAGGTTCGACGTCAAAAATGGAATTTTTAAACA-TCTGGGGT
1 AAAATGGTAA-TTTTGGAAGGTTTGGGGTCAAAAATGGAATTTTTAGACATTCGGGGGT
* ** *
20320 AAAATGGTAATTTTGGAAAGTTAAGGGTCAAAAATTGAATTTT
1 AAAATGGTAATTTTGGAAGGTTTGGGGTCAAAAATGGAATTTT
20363 GGGAAGTTTG
Statistics
Matches: 138, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
57 27 0.20
58 62 0.45
59 49 0.36
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.35
Consensus pattern (58 bp):
AAAATGGTAATTTTGGAAGGTTTGGGGTCAAAAATGGAATTTTTAGACATTCGGGGGT
Found at i:20347 original size:28 final size:28
Alignment explanation
Indices: 20316--20661 Score: 241
Period size: 29 Copynumber: 11.6 Consensus size: 28
20306 TAAACATCTG
*
20316 GGGT-AAAATGGTAATTTTGGAAAGTTAA
1 GGGTAAAAAT-GTAATTTTGGAAAGTTTA
* *
20344 GGGTCAAAAAT-TGAATTTTGGGAAGTTTG
1 GGGT-AAAAATGT-AATTTTGGAAAGTTTA
* * *
20373 GGGGAAAAATGTAGTTTTTGAAAAGTTTA
1 GGGTAAAAATGTA-ATTTTGGAAAGTTTA
*
20402 TGGTTAAAAATGTAATTTTGGAAAGTTTA
1 -GGGTAAAAATGTAATTTTGGAAAGTTTA
*
20431 GGTGTAAAAATGTAATTTTTGAAAAGTTTGGGAA
1 GG-GTAAAAATGTAA-TTTTGGAAAGTTT----A
* * *
20465 GTTTGGGGGAAAAATGTAGTTTTTGAAAAGTTTA
1 -----GGGTAAAAATGTA-ATTTTGGAAAGTTTA
20499 GGGTTAAAAATGTAATTTTGGAAAGTTTA
1 GGG-TAAAAATGTAATTTTGGAAAGTTTA
* *
20528 GGTGTAAAAATGTAATTTTTGAAAAGTTTG
1 GG-GTAAAAATGTAA-TTTTGGAAAGTTTA
* *
20558 GGGTCAAAAATGGAATTTTAGAAAGTTT-
1 GGGT-AAAAATGTAATTTTGGAAAGTTTA
* * * *
20586 GGGTCAAAAATGGAATTTTAGAATGTTCGA
1 GGGT-AAAAATGTAATTTTGGAAAGTT-TA
* * *
20616 GGGT-AAAATGGAATTTTAGAAAGTTCGA
1 GGGTAAAAATGTAATTTTGGAAAGTT-TA
*
20644 GGGTAAAAATATAATTTT
1 GGGTAAAAATGTAATTTT
20662 TTGACAGTTC
Statistics
Matches: 264, Mismatches: 29, Indels: 49
0.77 0.08 0.14
Matches are distributed among these distances:
28 67 0.25
29 105 0.40
30 65 0.25
34 2 0.01
38 23 0.09
39 2 0.01
ACGTcount: A:0.37, C:0.01, G:0.26, T:0.35
Consensus pattern (28 bp):
GGGTAAAAATGTAATTTTGGAAAGTTTA
Found at i:20382 original size:58 final size:58
Alignment explanation
Indices: 20315--20661 Score: 204
Period size: 59 Copynumber: 5.8 Consensus size: 58
20305 TTAAACATCT
* *
20315 GGGGTAAAATGGTAATTTTGGAAAGTTAAGGGTCAAAAAT-TGAATTTTGGGAAGTTT-G
1 GGGGAAAAAT-GTAATTTTGGAAAGTTAAGGGTCAAAAATGT-AATTTTGGAAAGTTTAG
* * * * *
20373 GGGGAAAAATGTAGTTTTTGAAAAGTTTATGGTTAAAAATGTAATTTTGGAAAGTTTAG
1 GGGGAAAAATGTA-ATTTTGGAAAGTTAAGGGTCAAAAATGTAATTTTGGAAAGTTTAG
* * * ** * *
20432 GTGTAAAAATGTAATTTTTGAAAAGTTTGGGAAGTTTGGGGGAAAAATGTAGTTTTTGAAAAGTT
1 GGGGAAAAATGTAA-TTTTGGAAAG-TT---AA----GGGTCAAAAATGTA-ATTTTGGAAAGTT
20497 TAG
56 TAG
** * *
20500 GGTTAAAAATGTAATTTTGGAAAGTTTAGGTGT-AAAAATGTAATTTTTGAAAAGTTT-G
1 GGGGAAAAATGTAATTTTGGAAAGTTAAGG-GTCAAAAATGTAA-TTTTGGAAAGTTTAG
* * * * * * * *
20558 GGGTCAAAAATGGAATTTTAGAAAGTT-TGGGTCAAAAATGGAATTTTAGAATG-TTCG
1 GGG-GAAAAATGTAATTTTGGAAAGTTAAGGGTCAAAAATGTAATTTTGGAAAGTTTAG
* * * * * *
20615 AGGGTAAAATGGAATTTTAGAAAGTTCGAGGGT-AAAAATATAATTTT
1 GGGGAAAAATGTAATTTTGGAAAGTT-AAGGGTCAAAAATGTAATTTT
20662 TTGACAGTTC
Statistics
Matches: 232, Mismatches: 37, Indels: 41
0.75 0.12 0.13
Matches are distributed among these distances:
56 23 0.10
57 27 0.12
58 62 0.27
59 67 0.29
60 3 0.01
63 2 0.01
66 2 0.01
67 20 0.09
68 26 0.11
ACGTcount: A:0.37, C:0.01, G:0.26, T:0.35
Consensus pattern (58 bp):
GGGGAAAAATGTAATTTTGGAAAGTTAAGGGTCAAAAATGTAATTTTGGAAAGTTTAG
Found at i:20488 original size:38 final size:39
Alignment explanation
Indices: 20418--20497 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 39
20408 AAAATGTAAT
* *
20418 TTTGGAAAGTTTAGGTGTAAAAATGTAATTTTTGAAAAG
1 TTTGGAAAGTTTAGGGGGAAAAATGTAATTTTTGAAAAG
* *
20457 TTTGGGAAGTTT-GGGGGAAAAATGTAGTTTTTGAAAAG
1 TTTGGAAAGTTTAGGGGGAAAAATGTAATTTTTGAAAAG
20495 TTT
1 TTT
20498 AGGGTTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 26 0.70
39 11 0.30
ACGTcount: A:0.34, C:0.00, G:0.28, T:0.39
Consensus pattern (39 bp):
TTTGGAAAGTTTAGGGGGAAAAATGTAATTTTTGAAAAG
Found at i:20526 original size:97 final size:97
Alignment explanation
Indices: 20360--20559 Score: 391
Period size: 97 Copynumber: 2.1 Consensus size: 97
20350 AAAATTGAAT
*
20360 TTTGGGAAGTTTGGGGGAAAAATGTAGTTTTTGAAAAGTTTATGGTTAAAAATGTAATTTTGGAA
1 TTTGGGAAGTTTGGGGGAAAAATGTAGTTTTTGAAAAGTTTAGGGTTAAAAATGTAATTTTGGAA
20425 AGTTTAGGTGTAAAAATGTAATTTTTGAAAAG
66 AGTTTAGGTGTAAAAATGTAATTTTTGAAAAG
20457 TTTGGGAAGTTTGGGGGAAAAATGTAGTTTTTGAAAAGTTTAGGGTTAAAAATGTAATTTTGGAA
1 TTTGGGAAGTTTGGGGGAAAAATGTAGTTTTTGAAAAGTTTAGGGTTAAAAATGTAATTTTGGAA
20522 AGTTTAGGTGTAAAAATGTAATTTTTGAAAAG
66 AGTTTAGGTGTAAAAATGTAATTTTTGAAAAG
20554 TTTGGG
1 TTTGGG
20560 GTCAAAAATG
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 102 1.00
ACGTcount: A:0.35, C:0.00, G:0.27, T:0.38
Consensus pattern (97 bp):
TTTGGGAAGTTTGGGGGAAAAATGTAGTTTTTGAAAAGTTTAGGGTTAAAAATGTAATTTTGGAA
AGTTTAGGTGTAAAAATGTAATTTTTGAAAAG
Found at i:21591 original size:21 final size:21
Alignment explanation
Indices: 21559--21598 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
21549 CGAAATGGGT
21559 GTTTCCATAATTTTAAAATGG
1 GTTTCCATAATTTTAAAATGG
*
21580 GTTTCACA-AATTTTTAAAT
1 GTTTC-CATAATTTTAAAAT
21599 TTTTTAGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (21 bp):
GTTTCCATAATTTTAAAATGG
Found at i:22511 original size:12 final size:12
Alignment explanation
Indices: 22494--22537 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
22484 ATTGTTTAAA
22494 TAAATTTAATTT
1 TAAATTTAATTT
**
22506 TAAATTT-ATAA
1 TAAATTTAATTT
22517 TAAATTTAATTT
1 TAAATTTAATTT
22529 TAAATTTAA
1 TAAATTTAA
22538 CTTAATTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 9 0.33
12 18 0.67
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TAAATTTAATTT
Found at i:22513 original size:6 final size:6
Alignment explanation
Indices: 22494--22562 Score: 56
Period size: 6 Copynumber: 12.0 Consensus size: 6
22484 ATTGTTTAAA
* * *
22494 TAAATT TAATTT TAAATT TATAA-- TAAATT TAATTT TAAATT T-AACT
1 TAAATT TAAATT TAAATT TA-AATT TAAATT TAAATT TAAATT TAAATT
* *
22540 TAATTT TAAA-A TAAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT
22563 CTGTTGGGCC
Statistics
Matches: 48, Mismatches: 10, Indels: 10
0.71 0.15 0.15
Matches are distributed among these distances:
4 2 0.04
5 10 0.21
6 34 0.71
7 2 0.04
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (6 bp):
TAAATT
Found at i:22519 original size:23 final size:22
Alignment explanation
Indices: 22488--22537 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 22
22478 TTGGACATTG
22488 TTTAAATAAATTTAATTTTAAA
1 TTTAAATAAATTTAATTTTAAA
22510 TTTATAATAAATTTAATTTTAAA
1 TTTA-AATAAATTTAATTTTAAA
22533 TTTAA
1 TTTAA
22538 CTTAATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 5 0.19
23 22 0.81
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTAAATAAATTTAATTTTAAA
Found at i:22530 original size:17 final size:16
Alignment explanation
Indices: 22504--22559 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 16
22494 TAAATTTAAT
*
22504 TTTAAATTTATAATAAA
1 TTTAATTTTA-AATAAA
*
22521 TTTAATTTTAAATTTAA
1 TTTAATTTTAAA-TAAA
*
22538 CTTAATTTTAAAATAAA
1 TTTAATTTT-AAATAAA
22555 TTTAA
1 TTTAA
22560 ATTCTGTTGG
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
16 2 0.06
17 27 0.84
18 3 0.09
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTAATTTTAAATAAA
Found at i:23256 original size:201 final size:200
Alignment explanation
Indices: 22897--23340 Score: 708
Period size: 201 Copynumber: 2.2 Consensus size: 200
22887 ATTCAGTCTT
* * * * * *
22897 CTTCTCAGTATCTCATCAGGAAGATGACCGCATCGCTTGTTTTAATTCGCTTCTCTGTATCTTAT
1 CTTCTCTGTATCTCATCAGGAAGATGATCGC-TCACTTGTTTCAATCCGCTTCTCTGTATCTCAT
*
22962 TAGGAAGACGAACTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGA
65 CAGGAAGACGAACTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGA
* * *
23027 CCTGCTTCTTAGTATCTCATCAGGAAGCTGGGGTTCGAAGGTTTGCTCGCATTAAGCCTTGAGTT
130 CCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTAAGCCCTGAGTT
23092 GGTATA
195 GGTATA
**
23098 CTTCTCTGTATCTCATCAGGAAGATTTTCGTCTCACTTGTTTCAATCCGCTTCTCTGTATCTCAT
1 CTTCTCTGTATCTCATCAGGAAGATGATCG-CTCACTTGTTTCAATCCGCTTCTCTGTATCTCAT
* *
23163 CAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTTGA
65 CAGGAAGACGAACTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGA
* *
23228 CCTGCTTCTCAGTATCTCATCCGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGAGCCCTGAGTT
130 CCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTAAGCCCTGAGTT
23293 GGTATA
195 GGTATA
*
23299 CTTCACTGTATCTCATCAGGAAGATGATCGCCTCACTTGTTT
1 CTTCTCTGTATCTCATCAGGAAGATGATCG-CTCACTTGTTT
23341 TTGGTAATTG
Statistics
Matches: 222, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
201 221 1.00
202 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (200 bp):
CTTCTCTGTATCTCATCAGGAAGATGATCGCTCACTTGTTTCAATCCGCTTCTCTGTATCTCATC
AGGAAGACGAACTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGAC
CTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTAAGCCCTGAGTTG
GTATA
Found at i:34878 original size:58 final size:59
Alignment explanation
Indices: 34724--35233 Score: 293
Period size: 58 Copynumber: 8.7 Consensus size: 59
34714 GCATCAGAAA
* * * * *
34724 AAAATGGTAATTTTCGGAAGGTT-TAGGGTTAAAAATGGTATTTTTAGACA--TTCGGAGGT
1 AAAA-GGTAATTTTTGGAAGGTTCGA-GGTTAAAAATGGAATTTTTAGAAAGTTTAGG-GGT
* * *
34783 AAAATGGTAATTTTTGGAAGGTTTGGGGTTAAAAATGGAATTTTTAGACA-TTTAGGGGT
1 AAAA-GGTAATTTTTGGAAGGTTCGAGGTTAAAAATGGAATTTTTAGAAAGTTTAGGGGT
* * * * **
34842 AAAAGGTAATCTTTGTAAGGTTCGAGGTAAAAAATGGAATTTTTAGACA--TCCGAGGGT
1 AAAAGGTAATTTTTGGAAGGTTCGAGGTTAAAAATGGAATTTTTAGAAAGTTTAG-GGGT
* * * ** * **
34900 AAAATGGTAA-TTTTGGAAAGTTTGGGGACAAAAAATGTAA-ACTTAGAAAGTTTAGGGGTT
1 AAAA-GGTAATTTTTGGAAGGTTCGAGG-TTAAAAATGGAATTTTTAGAAAGTTTAGGGG-T
* * * * * *
34960 AAAATGTAAATTTTAGAAAGTT-TAGGGTTAAAAATGGAA-TTTTGGAAAGTTT-GAGGGT
1 AAAAGGTAATTTTTGGAAGGTTCGA-GGTTAAAAATGGAATTTTTAGAAAGTTTAG-GGGT
* * *
35018 AAAAATGTAATTTTTGGAA-GTTCGAGGTTAAAAATGGTA-TTTTAGAAAGTTCAGGGGT
1 -AAAAGGTAATTTTTGGAAGGTTCGAGGTTAAAAATGGAATTTTTAGAAAGTTTAGGGGT
* * * * * * *
35076 AAAATGTAATTTTTAGAAAGTTCAAGGTTAAAAATGGAA-TTTTGGATAG-TTCGAGGGT
1 AAAAGGTAATTTTTGGAAGGTTCGAGGTTAAAAATGGAATTTTTAGAAAGTTTAG-GGGT
* ** * * * * * * *
35134 AAAATGTAA-TTTTCAAAAGCTCGGGGTCAAAAATGGAA-GTTTAGAAAGTTCAAGGGT
1 AAAAGGTAATTTTTGGAAGGTTCGAGGTTAAAAATGGAATTTTTAGAAAGTTTAGGGGT
* * * **
35191 AAAATGG-AA-TTTAGGAAAGTTCGAGGGTAAAAATATAATTTTT
1 AAAA-GGTAATTTTTGGAAGGTTCGAGGTTAAAAATGGAATTTTT
35234 GGACAGTTCA
Statistics
Matches: 362, Mismatches: 70, Indels: 39
0.77 0.15 0.08
Matches are distributed among these distances:
57 81 0.22
58 143 0.40
59 114 0.31
60 24 0.07
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.33
Consensus pattern (59 bp):
AAAAGGTAATTTTTGGAAGGTTCGAGGTTAAAAATGGAATTTTTAGAAAGTTTAGGGGT
Found at i:34932 original size:29 final size:28
Alignment explanation
Indices: 34900--35241 Score: 145
Period size: 29 Copynumber: 11.8 Consensus size: 28
34890 ATCCGAGGGT
34900 AAAATGGTAATTTTGGAAAGTTT-GGGGACAA
1 AAAAT-GTAATTTTGGAAAGTTTAGGGG---A
** * *
34931 AAAATGTAAACTTAGAAAGTTTAGGGGTT
1 AAAATGTAATTTTGGAAAGTTTAGGGG-A
* *
34960 AAAATGTAAATTTTAGAAAGTTTAGGGTTA
1 AAAATGT-AATTTTGGAAAGTTTAGGG-GA
* *
34990 AAAATGGAATTTTGGAAAGTTTGAGGGTA
1 AAAATGTAATTTTGGAAAGTTT-AGGGGA
* **
35019 AAAATGTAATTTTTGG-AAGTTCGAGGTTA
1 AAAATGTAA-TTTTGGAAAGTT-TAGGGGA
* * *
35048 AAAATGGT-ATTTTAGAAAGTTCAGGGGT
1 AAAAT-GTAATTTTGGAAAGTTTAGGGGA
* * **
35076 AAAATGTAATTTTTAGAAAGTTCAAGGTTA
1 AAAATGTAA-TTTTGGAAAGTT-TAGGGGA
* * * *
35106 AAAATGGAATTTTGGATAG-TTCGAGGGT
1 AAAATGTAATTTTGGAAAGTTTAG-GGGA
** * *
35134 AAAATGTAATTTTCAAAAG-CTCGGGGTCA
1 AAAATGTAATTTTGGAAAGTTTAGGGG--A
* * * * * *
35163 AAAATGGAAGTTTAGAAAGTTCAAGGGT
1 AAAATGTAATTTTGGAAAGTTTAGGGGA
* * * *
35191 AAAATGGAATTTAGGAAAGTTCGAGGGTA
1 AAAATGTAATTTTGGAAAGTT-TAGGGGA
* *
35220 AAAATATAATTTTTGGACAGTT
1 AAAATGTAA-TTTTGGAAAGTT
35242 CAAGGACCTT
Statistics
Matches: 237, Mismatches: 57, Indels: 35
0.72 0.17 0.11
Matches are distributed among these distances:
27 6 0.03
28 52 0.22
29 97 0.41
30 73 0.31
31 9 0.04
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.32
Consensus pattern (28 bp):
AAAATGTAATTTTGGAAAGTTTAGGGGA
Found at i:37097 original size:17 final size:17
Alignment explanation
Indices: 37071--37129 Score: 73
Period size: 17 Copynumber: 3.5 Consensus size: 17
37061 AATTTTTAAT
* *
37071 TTTAATTTTATAATAAA
1 TTTAAATTTAAAATAAA
37088 TTTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
** *
37105 CCTAATTTTAAAATAAA
1 TTTAAATTTAAAATAAA
37122 TTTAAATT
1 TTTAAATT
37130 CTGTTGGGCT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:38761 original size:30 final size:29
Alignment explanation
Indices: 38725--39158 Score: 384
Period size: 30 Copynumber: 14.7 Consensus size: 29
38715 GGATAAGTCT
* *
38725 CATTTTAACCTCGAACCTTCAAAAAATTAC
1 CATTTTAACCCCGAACCTTCCAAAAA-TAC
* *
38755 CATTTTACCCCCGAA-CTTCCAAAAATCC
1 CATTTTAACCCCGAACCTTCCAAAAATAC
38783 CATTTTTAACCCCGAACCTTCCAAAAATAC
1 CA-TTTTAACCCCGAACCTTCCAAAAATAC
* *
38813 CATTTT-ACCCCCAAACTTCCAAAAA-ACC
1 CATTTTAACCCCGAACCTTCCAAAAATA-C
38841 CATTTTTTAACCCCGAACCTTCCAAAAATAC
1 CA--TTTTAACCCCGAACCTTCCAAAAATAC
* * *
38872 CATTTT-ACCCCCAAACTTCCAAAAATCC
1 CATTTTAACCCCGAACCTTCCAAAAATAC
*
38900 CATTTTTAACCCTGAACCTTCCAAAAAATAC
1 CA-TTTTAACCCCGAACCTTCC-AAAAATAC
* *
38931 CATTTTACCCCCGAA-CTTCCAAAAATCC
1 CATTTTAACCCCGAACCTTCCAAAAATAC
* *
38959 CATTTTTAACCTCGAACCTTCTCAAAATTAC
1 CA-TTTTAACCCCGAACCTTC-CAAAAATAC
* * * * *
38990 CACTTT-ACACCAAAACTTCCAAAAATCC
1 CATTTTAACCCCGAACCTTCCAAAAATAC
*
39018 CATTTTTAACCCCGAATCTTCCAAAAATTAC
1 CA-TTTTAACCCCGAACCTTCCAAAAA-TAC
*
39049 AATTTT-ACCCTCGAA-CTTCCAAAAAGT-C
1 CATTTTAACCC-CGAACCTTCCAAAAA-TAC
* * * *
39077 TTATTTTTTATCCTGAACCTTCCAAAAATTAC
1 -CA-TTTTAACCCCGAACCTTCCAAAAA-TAC
* *
39109 CATTTTACCCCCGAA-CTTCCAAAAATCC
1 CATTTTAACCCCGAACCTTCCAAAAATAC
* *
39137 CATTTTTGACTCCGAACCTTCC
1 CA-TTTTAACCCCGAACCTTCC
Statistics
Matches: 329, Mismatches: 51, Indels: 48
0.77 0.12 0.11
Matches are distributed among these distances:
27 1 0.00
28 68 0.21
29 97 0.29
30 105 0.32
31 56 0.17
32 2 0.01
ACGTcount: A:0.35, C:0.33, G:0.03, T:0.29
Consensus pattern (29 bp):
CATTTTAACCCCGAACCTTCCAAAAATAC
Found at i:38790 original size:59 final size:59
Alignment explanation
Indices: 38727--39158 Score: 597
Period size: 59 Copynumber: 7.3 Consensus size: 59
38717 ATAAGTCTCA
*
38727 TTTTAACCTCGAACCTTCAAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCAT
1 TTTTAACCTCGAACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCAT
* * *
38786 TTTTAACCCCGAACCTTCCAAAAA-TACCATTTTACCCCCAAACTTCCAAAAAACCCATT
1 TTTTAACCTCGAACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCA-T
* *
38845 TTTTAACCCCGAACCTTCCAAAAA-TACCATTTTACCCCCAAACTTCCAAAAATCCCAT
1 TTTTAACCTCGAACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCAT
*
38903 TTTTAACC-CTGAACCTTCCAAAAAATACCATTTTACCCCCGAACTTCCAAAAATCCCAT
1 TTTTAACCTC-GAACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCAT
* * **
38962 TTTTAACCTCGAACCTTCTC-AAAATTACCACTTTACACCAAAACTTCCAAAAATCCCAT
1 TTTTAACCTCGAACCTTC-CAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCAT
* * * * **
39021 TTTTAACCCCGAATCTTCCAAAAATTACAATTTTACCCTCGAACTTCCAAAAAGTCTTATT
1 TTTTAACCTCGAACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAA-TCCCA-T
*
39082 TTTTATCCT-GAACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCAT
1 TTTTAACCTCGAACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCAT
*
39140 TTTTGA-CTCCGAACCTTCC
1 TTTTAACCT-CGAACCTTCC
Statistics
Matches: 333, Mismatches: 30, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
57 3 0.01
58 60 0.18
59 217 0.65
60 45 0.14
61 8 0.02
ACGTcount: A:0.35, C:0.33, G:0.03, T:0.29
Consensus pattern (59 bp):
TTTTAACCTCGAACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCAT
Done.