Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012287.1 Kokia drynarioides strain JFW-HI SEQ_127288, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5297
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Found at i:580 original size:216 final size:215
Alignment explanation
Indices: 153--5288 Score: 5341
Period size: 216 Copynumber: 23.9 Consensus size: 215
143 GATCGTAATC
* *** ** *
153 TAAGTTATAAAAGAACTCGTAAAAGTTTGAGAAGTTCAGAAGTTTGGCCAAGGGCCAATAGAAAA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAA
218 ACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGACAAACT-
66 ACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC-AAAAGTTG-TTTACAAAATGACAAACTA
* * * * * * *
281 ATTCAGACCAAATGATACAATTTCTCGAGAATGGAATGTTCGAAAAATTTCTCGAAGGAATGGTT
129 ATT-GGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGAT
* * ** *
346 TGTTTTGAATGTTTTAAGGATCG
193 CGTCTTGAATACTTTAAGGAACG
* * * * * *
369 TAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCAGATGTACATCTAAGAACCAAAAGACAA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAA
* *
434 ACAATTCTCACAAAAATAAGATTTTAATTCAAAGACAAAAGCTTGTTTACAAAATGACAAACTAA
66 ACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAG-TTGTTTACAAAATGACAAACTAA
* * * * *
499 TTGGACCAAATGATGCGATTTCTCGAGCATGAAATATTCGGGAAAA-TCCTCAAAGGGATGGACC
130 TTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-GGAAAATTCCTCGAAGGAATGGATC
563 GTCTTGAATACTTTAAGGAACCG
194 GTCTTGAATACTTTAAGGAA-CG
* *
586 -AAGTTATAAGAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGA-CCAAGGACCAATAGACA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC-ATCCAAGAACCAATAGACA
* *
649 AACAATTCTTACCAAAATAAGTTTTTAATTCAAAGATAAAAAG-TGTTTACAAAATGACAAAC-A
65 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGA-CAAAAGTTGTTTACAAAATGACAAACTA
* * ** * * * * * *
712 TTTTTGACCAAATGACACTATTTCCCGAGAATGGAATGTTCGGAAAATTTCTCGAAGAAATGCAT
129 -ATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGAT
* *
777 CGTTTTGAATACTTT-AGGTGAC-
193 CGTCTTGAATACTTTAAGG-AACG
* * * * * ** * *
799 TAAGTTATAAAAGAACTCGTAAAATTTTTACCAGTTCGGATGTTTGTCCAAGAACCCAGAGACAA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAA
* * *
864 ACAATTCTCACCTAAATAAG-TTTTATTTCAAAGAGAAAAAGTTGTTTACAAAATGACAAACTAA
66 ACAATTCTCACCAAAATAAGTTTTTAATTCAAAGA-CAAAAGTTGTTTACAAAATGACAAACTAA
* * * * ** * * *
928 TTGGACCAAATGATGCTATTTCTCGAGCTTTGAATTTTCAAAAAACTGCTCGAAGGAATGGATTG
130 TTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATCG
*
993 TCTTGAATACTTTAAGGAACC
195 TCTTGAATACTTTAAGGAACG
** * * ** ** *
1014 TAAGTTATTCAAGAACTCATAAAACTTTGACAAGTTTTGAAGTTCGGCCAAGAACC-ATGATACA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAT-AGACA
** * *
1078 AACAATTCTCACGTAAATAAGTTTTTAACTCAAAGACAAAAACTTGTTTACAAAATGACAAACTA
65 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGACAAACTA
* * * *
1143 TTTGGACCAATTTATGTGATTTCTCGAGCATGGAATGTTC-GAGAAATTCCTCGAAGGAATGGAT
129 ATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGA-AAATTCCTCGAAGGAATGGAT
*
1207 CGTCTTGAATACTTTAAAGAATCG
193 CGTCTTGAATACTTTAAGGAA-CG
* * * ** * * *
1231 -AAGTTATAAAAAAACTCATAAAAGTTTGATAAGTTCAGAAGTTCGGCCAAGGACCAATGGAAAA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAA
* * *
1295 ATATTTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAATTGTTTTACAAAATGACAAACT-A
66 ACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAGTTG-TTTACAAAATGACAAACTAA
* * * * * * *
1359 TTCAGACCAAATGATGCAATTTCTCGA-TACTGGAATGTTTGAAAAATTTCTCAAAGGAATGGAT
130 TT-GGACCAAATGATGCGATTTCTCGAGCA-TGGAATGTTCGGAAAATTCCTCGAAGGAATGGAT
* * ** * *
1423 TGTTTTGAATGTTTTAAGGATCC
193 CGTCTTGAATACTTTAAGGAACG
** * * * * *
1446 TAAGTTATAAAAGAACTCGTAAAAGTTTTTCCAGTTCAGATGTACATCTAAGAACCAAGAGACAA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAA
* * *
1511 AAAATTCTCACAAAAATAAGATTTTAATTCAAAGACAAAAGGTTGTTTACAAAATGACAAACTAA
66 ACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAA-GTTGTTTACAAAATGACAAACTAA
* * * * *
1576 TTGGACCAAATGATGCGATTTCTCGAGCATGAAATGTTCGGGAAACTCCTCAAAGGAATGGACCG
130 TTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATCG
1641 TCTTGAATACTTTAAGGAATCG
195 TCTTGAATACTTTAAGGAA-CG
* * * *
1663 -AAGTTATAAGAGAACTCGTAAAAGTTTGACAAGTTCAGTAGTTCGA-CCAAGGACCAATACACA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC-ATCCAAGAACCAATAGACA
* *
1726 AACAATTCTTACCAAAATAAGTTTTTAATTCAAAGATAAAAAG-TGTTTTACAAAATGACAAACT
65 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGA-CAAAAGTTG-TTTACAAAATGACAAACT
* * * * * * * *
1790 ATTTTGACCAAATTATACGATTTC-CTGAGAATGGAATGTTCAGAAAATTTCTCGAAGGAATGCA
128 AATTGGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGA
* *
1854 TCGTTTTAAATACTTTAAGGAACCG
192 TCGTCTTGAATACTTTAAGGAA-CG
* ** * ** *
1879 -AAGTTATAAAAGAACTCGTAAAAGTTTTACCGGTTCAGATGTTCGGCCAAGAACCAAGAGACAA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAA
* * *
1943 ATAATTCTCACCAAAATAAGTTTCTAATTCAAAAACAAAAAGTTGTTTACAAAATGACAAACTAA
66 ACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGACAAACTAA
* * *
2008 TTGGACTAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCC-CGAAGGAATGGATT
130 TTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATT-CCTCGAAGGAATGGATC
*
2072 GTCTTGAATACTTTAAGGAACC
194 GTCTTGAATACTTTAAGGAACG
* ** * * * * * *
2094 TATGTTATTCAAGAACTCATAAAACTTTGACAAGTTCGGAAGTTCAACCAAGGACC-ATGAGGCA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAT-AGACA
* *
2158 AACAATTCCCA-CATAAATAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGAGAAACT
65 AACAATTCTCACCA-AAATAAGTTTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGACAAACT
* * * * * *
2222 ACTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTCAGG-AAATTCCTCAAAGTAAGGGA
128 AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-GGAAAATTCCTCGAAGGAATGGA
**
2286 TAATCTTGAATACTTTAAGGAACCG
192 TCGTCTTGAATACTTTAAGGAA-CG
* * *
2311 -AAGTTATAAAAGAAGTCGTAAAAGTTTGACAAGATCAGAAGTTCGA-CCAAGGACCAATAGACA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC-ATCCAAGAACCAATAGACA
*
2374 AACAATTCTCACCAAAATAAG-TTTTAATTCAAAGATAAAAAG-TGTTTTACAAAATGACAAACT
65 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGA-CAAAAGTTG-TTTACAAAATGACAAACT
* * * * * * * ** * *
2437 ATTTTGAACAAATGATACGATTTCCCAAGAATGGAATGTTCAAAAAATTTCTCGAAGGAATGCAT
128 AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGAT
* * * *
2502 CATTTTGAATAATTTAAGGAACC
193 CGTCTTGAATACTTTAAGGAACG
* * * * * * *
2525 TAAGTTATAAAAGAACTCATAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAACCAAGAGACAA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAA
* * * *
2590 ACAATTCTCACCTAAATATG-TTTTAATTCGAAGACAAAAAGTTCTTTACAAAATGACAAACTAA
66 ACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGACAAACTAA
* * * *
2654 TTGGTCCAAATGTTGCGATTTCTCGAGC------T-TT----AAATT-TTCTAA--AATGGATCG
130 TTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATCG
* *
2705 TCTTGAATACCTTAAGGAACC
195 TCTTGAATACTTTAAGGAACG
* ** *
2726 TAAGTTATTAAAGAACTCGTAAAAGTTTGACAAGTTTTGAAGTTTGA-CCAAGAACC-ATGAGAC
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAG-TTCATCCAAGAACCAAT-AGAC
** * * *
2789 AAACAATTCTCACGTAAATAAGTTTTTAACTCAAAGACAAAAACTTGTTTACAAAATGACAAGCT
64 AAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGACAAACT
* * *
2854 ATTTGGACCAATTGATGCGATTTCTCGAGCATGGAATGTTC-GACAAAATCCTCGAAGGAATGGA
128 AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGA-AAATTCCTCGAAGGAATGGA
*
2918 TCGACTTGAATACTTTAAGGAATCG
192 TCGTCTTGAATACTTTAAGGAA-CG
* * *** *
2943 -AAGTTATAAAAGAACTCGTAATAGTTTGAGAAGTTCAGAAGTTTGGCCAA-AGACCAATTGACA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGA-ACCAATAGACA
3006 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGACAAACT
65 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC-AAAAGTTG-TTTACAAAATGACAAACT
* * * * * * * *
3070 ATTTGGACCAACTGATGCGATTTC-CTGAGAATGGAATGTTTGAAAAATTTCTCAAAGTAATGGA
128 AATTGGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGA
* * * *
3134 TTGTTTTGAATACTTTAAGGATCC
192 TCGTCTTGAATACTTTAAGGAACG
* * * * * *
3158 TAAGTTATAAAAGAACTCGTAAAAGTTTTACCAGTTCAGATGTACATTCAAGAACCAAGAGACAA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAA
* * *
3223 ACAATTCTCACAAAAATAAGATTTTAATTCAAAGACAAAAAGTTGTTTACAAAATGACAAAATAA
66 ACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGACAAACTAA
* * * * * * *
3288 TTAGACCAAATAATGCGATTTCTCGAGCATGAAATGTT-TGAGAAATTCCTCAAAAGAGTGGATC
130 TTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGA-AAATTCCTCGAAGGAATGGATC
3352 GTCTTGAATACTTTAAGGAACCG
194 GTCTTGAATACTTTAAGGAA-CG
* * *
3375 -AAGTTGTAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGA-CCAAGGACCAATAGACA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC-ATCCAAGAACCAATAGACA
3438 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAAG-TGTTTTACAAAATGACAAACT
65 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC-AAAAGTTG-TTTACAAAATGACAAACT
* * * * * *
3502 ATTTGGACCAAATGATGCGATTTCCCGAGAATGGAACGTTCGAAAAATTTCC-CGAAGGAATGCA
128 AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAA-TTCCTCGAAGGAATGGA
* * * *
3566 TTGTTTTGAATACATTAAGGAACC
192 TCGTCTTGAATACTTTAAGGAACG
* * * * * * *
3590 TAAGTTATAAAAGAACTTGTAAAAGTTTTACCAGTTCGGATGTTCGTCCAAGAGCCGAA-AGACA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACC-AATAGACA
* * * * *
3654 AACTATTCTCATCACAATAAGTTTTTAATTCAAATACAAAAAGCTGTTTACAAAATGACAAACTA
65 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGACAAACTA
* * * * * *
3719 ATTGGATCAAATGATACGATTTCTAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAGTGGATC
129 ATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATC
*
3784 GTCTTGAACACTTTAAGGAACCG
194 GTCTTGAATACTTTAAGGAA-CG
* * *
3807 -AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTAGAAGTTTGA-CCAAGGACCAATAGACA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAG-TTCATCCAAGAACCAATAGACA
* * *
3870 AACAATTCTTACCAAAATAAGTTTTAAATTCAAAGATAAAAAG-TGTTTTACAAAATGACAAACT
65 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGA-CAAAAGTTG-TTTACAAAATGACAAACT
* * * * * * * *
3934 ATTTTGACCAAATGATACGATTTCCCGAGAATGGAATATTCGGAAAATTTCTCGAAGGAATGCAT
128 AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGAT
*
3999 CGTTTTGAATACTTTAAGGAATC-
193 CGTCTTGAATACTTTAAGGAA-CG
* * * * * *
4022 TAAGTTATAAAATAACTCATAAAAGTTTTACCAGTTC-GAATGTTCGTCCAAGAACCAAGAGACA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAA-GTTCATCCAAGAACCAATAGACA
* *
4086 AATAATTCTCACCAAAATAAGTTTCTAATTCAAATAGA-AAAAGTTGTTTACAAAATGACAAACT
65 AACAATTCTCACCAAAATAAGTTTTTAATTC-AA-AGACAAAAGTTGTTTACAAAATGACAAACT
* * * * *
4150 AATTGGACCAAACGATGCGATTTCTTC-AACATGGAATGTTCAGAAAATTGCACGAAGGAATGGA
128 AATTGGACCAAATGATGCGATTTC-TCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGA
* * *
4214 TCGACTCGAATACTTTAAGGAACC
192 TCGTCTTGAATACTTTAAGGAACG
* * ** * * * * *
4238 TATGCTATTCAAGAACTCATAAACA--TTGACAAGTTCGGAAGTTCAGCCAAGGACC-ATGAGGC
1 TAAGTTATAAAAGAACTCGTAAA-AGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAT-AGAC
* ** * * *
4300 AAACAATTCCCACGTAAATAAGTTTTTAAATCAAAGACAAAAAGTTGTTTGCAAAATGAGAAACT
64 AAACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGACAAACT
* * * * * *
4365 ACTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTCAGG-AAATTCCTCAAAGTAAGGGA
128 AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTC-GGAAAATTCCTCGAAGGAATGGA
*
4429 TCATCTTGAATACTTTAAGGAACCG
192 TCGTCTTGAATACTTTAAGGAA-CG
* *
4454 -AAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCAGAAGTTCGA-CCAAGGACCAATAGACA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC-ATCCAAGAACCAATAGACA
* * * **
4517 AACAATTCTTACCAAAATAAGATTTTAATTCAAAGATAAAAAATGTTTTACAAAATGACAAACTA
65 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAGTTG-TTTACAAAATGACAAACTA
* * * * * * * * *
4582 TTTTGACCAAATGATACGATTTCCCGAGAACGGAATGTTCGGAGAATTTCTCGAAGGAATGCATC
129 ATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATC
* *
4647 GTTTTGAATACTTTAAGGAACC
194 GTCTTGAATACTTTAAGGAACG
* * * * *
4669 AAAGTTATAAAAGAACCCGTAAAAGTTTTACCAA-TTCGGATGTTCATCCAAGAACCAATAGACA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCAGAAGTTCATCCAAGAACCAATAGACA
* * *
4733 AACAATTCTCACCTAAATAAG-TTTTAATTAAAAGACAAAAAGTTGTTTACAAAATGAGAAACTA
65 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGAC-AAAAGTTGTTTACAAAATGACAAACTA
* * * * * * * *
4797 TTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGGAAATTCCTCAAAGTAAGGGATC
129 ATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATC
*
4862 ATCTTGAATACTTTAAGGAACCG
194 GTCTTGAATACTTTAAGGAA-CG
* * *
4885 -AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGA-CTAAGGACCAACAGACA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC-ATCCAAGAACCAATAGACA
* *
4948 AACAATTCTTACCAAAATAAGTTTTTAATTCAAAGATAAAAAG-TGTTTTACAAAATGACAAACT
65 AACAATTCTCACCAAAATAAGTTTTTAATTCAAAGA-CAAAAGTTG-TTTACAAAATGACAAACT
* * * * * * *
5012 ATTTTGACCAAATGATACGATTTCTCGAGAATGGAATGTTCGGAGAATTTCTCGAAGGAATGCAT
128 AATTGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGAT
* *
5077 CGTTTTGAATACTTTAAGGAACC
193 CGTCTTGAATACTTTAAGGAACG
* * * * * * *
5100 AAAGTTATAAAATAACCCGTAAAAGTTTTACCAGTTCGGATGTTCATCCAAGAACCAATAGACAA
1 TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAA
* * * *
5165 ACAATTCTCACCTAAATAAG-TTTTAATTAAAAGATAAAAAG-TGTATTAAAAAATGACAAACT-
66 ACAATTCTCACCAAAATAAGTTTTTAATTCAAAGA-CAAAAGTTGT-TTACAAAATGACAAACTA
* * * * *
5227 ATTCGGACCAAATGATGTGATTTCCCGAGAATGGAATGTTCGGAAAATTTCTCAAAGGAATG
129 ATT-GGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATG
5289 AATTGTTTT
Statistics
Matches: 4089, Mismatches: 695, Indels: 273
0.81 0.14 0.05
Matches are distributed among these distances:
200 1 0.00
201 93 0.02
202 65 0.02
203 4 0.00
204 5 0.00
208 3 0.00
209 3 0.00
213 26 0.01
214 183 0.04
215 861 0.21
216 2762 0.68
217 80 0.02
218 3 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (215 bp):
TAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAATAGACAA
ACAATTCTCACCAAAATAAGTTTTTAATTCAAAGACAAAAGTTGTTTACAAAATGACAAACTAAT
TGGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTCCTCGAAGGAATGGATCGT
CTTGAATACTTTAAGGAACG
Done.