Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012290.1 Kokia drynarioides strain JFW-HI SEQ_127291, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4145
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.36

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1739 original size:17 final size:18

Alignment explanation


    Indices: 1717--1750  Score: 61
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       1707 ATAACAATTA

                              
       1717 TGAAGATTTTGG-ATATG
          1 TGAAGATTTTGGCATATG

                             
       1734 TGAAGATTTTGGCATAT
          1 TGAAGATTTTGGCATAT

       1751 TCCCCGAAGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17   12  0.75
  18    4  0.25

ACGTcount: A:0.29, C:0.03, G:0.26, T:0.41


Consensus pattern (18 bp):   
TGAAGATTTTGGCATATG
Done.