Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012291.1 Kokia drynarioides strain JFW-HI SEQ_127292, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13533
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35


Found at i:8478 original size:56 final size:56

Alignment explanation


    Indices: 8409--8551  Score: 173
    Period size: 56  Copynumber: 2.6  Consensus size: 56

       8399 CCGTGTGTCA

                   *                        *   *          *         
       8409 CAAAATAATATACACACACGATCTGGCACAC-TTTCGTGTACCCAACTCATGTGCAC
          1 CAAAATAGTATACACACACGATCTGGCACACGCTT-ATGTACCCAACCCATGTGCAC

                  *         *        *                       *       
       8465 CAAAATGGTATACACATAC-AGTCTAGCACACGCTTATGTACCCAACCCGTGTGCAC
          1 CAAAATAGTATACACACACGA-TCTGGCACACGCTTATGTACCCAACCCATGTGCAC

                                *          
       8521 CAAAATAGTATACACACACGGTCTGGCACAC
          1 CAAAATAGTATACACACACGATCTGGCACAC

       8552 AGTAGTGTAT


Statistics
Matches: 72,  Mismatches: 12, Indels: 6
        0.80            0.13        0.07

Matches are distributed among these distances:
  55    1  0.01
  56   69  0.96
  57    2  0.03

ACGTcount: A:0.34, C:0.30, G:0.15, T:0.21


Consensus pattern (56 bp):   
CAAAATAGTATACACACACGATCTGGCACACGCTTATGTACCCAACCCATGTGCAC
Done.