Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012292.1 Kokia drynarioides strain JFW-HI SEQ_127293, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1908
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:1365 original size:23 final size:24

Alignment explanation


    Indices: 1312--1358  Score: 76
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1302 TCCAAATAAG

                 *     *            
       1312 AAAAGGTAAAATTACGTCGTTTTT
          1 AAAAGATAAAACTACGTCGTTTTT

                                   
       1336 AAAAGATAAAACTACGTCGTTTT
          1 AAAAGATAAAACTACGTCGTTTT

       1359 GATAGATGTT


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  24   21  1.00

ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34


Consensus pattern (24 bp):   
AAAAGATAAAACTACGTCGTTTTT
Done.