Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012293.1 Kokia drynarioides strain JFW-HI SEQ_127294, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4977
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33


Found at i:2307 original size:6 final size:6

Alignment explanation


    Indices: 2289--2320  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

       2279 ATTATCGCCG

                     *                           
       2289 TTGCCA TTTCCA TTGCCA TTGCCA TTGCCA TT
          1 TTGCCA TTGCCA TTGCCA TTGCCA TTGCCA TT

       2321 ATCATCTTCC


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.16, C:0.31, G:0.12, T:0.41


Consensus pattern (6 bp):   
TTGCCA
Done.