genome.fa.s12299.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012299.1 Kokia drynarioides strain JFW-HI SEQ_127300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196525

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257--295	13	2.8	13	92	7	60	0	17	0	82	0.68
263--297	17	2.1	16	94	5	61	0	14	0	85	0.59
1308--1393	32	2.7	32	90	0	136	48	20	9	20	1.77
1809--1848	21	1.9	21	90	10	64	55	12	10	22	1.67
2697--2752	29	2.0	27	89	6	85	26	5	3	64	1.32
2696--2744	14	3.5	13	78	10	53	30	2	4	63	1.24
3813--3862	16	2.9	17	82	14	66	74	0	10	16	1.08
3813--3880	19	3.8	19	79	14	65	70	1	10	17	1.22
3948--4010	29	2.1	30	91	2	101	25	28	6	39	1.80
11486--11574	33	2.7	34	78	14	91	67	5	0	26	1.13
11530--11572	17	2.5	17	80	0	59	74	6	0	18	1.04
21536--21607	35	2.1	35	84	5	92	44	0	4	51	1.20
21587--21620	10	3.3	10	91	4	50	47	0	0	52	1.00
21585--21634	21	2.4	21	74	12	50	44	0	2	54	1.11
21694--21731	18	2.1	18	95	0	67	34	10	15	39	1.82
21694--21739	18	2.6	18	89	3	58	34	13	15	36	1.86
31231--31294	24	2.7	24	90	0	92	40	14	23	21	1.90
31231--31308	24	3.2	24	85	0	84	41	15	23	20	1.90
38050--38102	26	1.9	29	85	11	76	39	11	3	45	1.58
38085--38117	17	1.9	18	88	11	52	42	12	0	45	1.41
43342--43580	52	4.6	52	86	1	336	36	22	12	28	1.91
50597--50772	52	3.4	51	88	0	271	37	23	13	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62212--62306	28	3.2	32	74	17	96	44	10	20	25	1.83
65006--65114	57	1.9	58	86	1	157	27	22	15	34	1.94
67728--67831	40	2.6	40	79	7	104	20	20	26	32	1.97
81070--81136	32	2.1	32	83	5	82	28	16	10	44	1.80
81478--81502	2	12.5	2	100	0	50	48	0	0	52	1.00
83949--83973	12	2.1	12	100	0	50	76	0	24	0	0.80
86439--86700	132	2.0	132	85	1	355	30	24	21	22	1.99
89931--89975	23	2.0	23	86	0	63	57	6	2	33	1.37
96423--96584	59	2.7	59	81	4	173	25	18	9	46	1.80
99545--99640	45	2.2	45	92	1	149	59	5	3	32	1.35
99549--99641	15	6.3	15	72	7	73	60	4	2	33	1.28
109085--109147	18	3.5	18	69	16	58	23	31	12	31	1.92
109066--109182	36	3.2	36	91	0	180	27	31	10	30	1.90
109187--109500	150	2.1	150	90	0	484	18	36	6	39	1.75
113576--113600	5	5.0	5	100	0	50	20	0	0	80	0.72
123457--123490	17	2.1	17	94	5	61	82	5	0	11	0.83
142420--142478	31	2.0	30	83	6	75	30	3	11	54	1.53
146678--146727	3	16.7	3	100	0	100	68	0	32	0	0.90
152944--153220	37	7.5	37	77	4	254	18	20	31	29	1.97
152940--153234	74	4.0	74	87	1	333	17	21	31	29	1.96
152938--153221	111	2.6	110	83	4	331	19	21	30	28	1.97
156376--156484	50	2.2	50	96	1	200	42	1	9	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158806--159032	41	5.4	41	87	3	267	35	11	26	26	1.90
158806--159032	125	1.8	125	84	7	307	35	11	26	26	1.90
161475--161517	19	2.3	19	84	8	52	58	4	0	37	1.19
162111--162316	109	1.9	112	84	9	280	23	24	12	39	1.89
167178--167220	21	2.0	21	86	4	59	72	4	4	18	1.20
168042--168084	19	2.3	19	84	8	52	58	4	0	37	1.19
182796--182849	17	3.2	17	82	10	67	46	1	3	48	1.30
182805--182851	22	2.2	21	81	11	51	46	2	2	48	1.25
182896--182969	18	4.4	17	70	19	57	41	32	10	14	1.81
184537--184883	30	11.7	29	78	6	322	37	28	2	30	1.71
184505--184873	59	6.3	58	83	6	404	38	28	2	30	1.71
190671--190724	17	3.2	17	82	10	67	46	1	3	48	1.30
190680--190726	22	2.2	21	81	11	51	46	2	2	48	1.25
190771--190844	18	4.4	17	70	19	57	41	32	10	14	1.81
192412--192758	30	11.7	29	78	6	322	37	28	2	30	1.71
192380--192748	59	6.3	58	83	6	404	38	28	2	30	1.71

Tables:   1

The End!