genome.fa.s12300.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012300.1 Kokia drynarioides strain JFW-HI SEQ_127301, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  251787

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716--790	17	4.4	17	77	0	87	53	4	4	38	1.39
726--792	34	2.0	34	87	0	98	55	5	4	34	1.45
1282--1320	3	13.3	3	94	5	71	30	0	0	69	0.89
5576--5613	14	2.8	14	84	4	51	28	0	2	68	1.03
6436--6483	12	4.0	12	83	0	60	6	2	18	72	1.15
6427--6518	24	3.8	24	76	5	87	8	6	18	66	1.41
6419--6534	47	2.5	47	77	5	126	11	5	18	64	1.44
15974--16032	4	14.8	4	96	0	82	50	6	23	18	1.70
30020--30064	23	2.0	22	83	12	56	22	0	31	46	1.52
47264--47309	23	2.0	23	95	0	83	39	19	8	32	1.82
50165--50198	7	4.7	7	85	7	50	41	26	2	29	1.70
50165--50198	15	2.4	14	85	9	50	41	26	2	29	1.70
53403--53452	18	2.8	18	87	0	73	8	6	16	70	1.32
53442--53493	12	4.3	12	75	0	50	13	9	11	65	1.47
53443--53545	24	4.7	22	70	19	63	10	8	15	65	1.47
53501--53552	12	4.4	12	78	2	52	5	5	23	65	1.36
53813--53886	31	2.4	31	95	0	139	10	18	35	35	1.86
66098--66134	4	9.2	4	100	0	74	24	0	27	48	1.51
69300--69358	20	2.9	21	85	10	77	32	0	18	49	1.48
69673--69718	23	1.9	25	86	8	69	36	2	2	58	1.22
70305--70348	15	2.9	15	86	0	61	6	15	43	34	1.74
71843--71909	11	6.8	11	68	25	51	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71824--71906	16	5.1	18	71	20	67	63	0	0	36	0.94
71817--71885	31	2.3	31	82	12	81	65	0	0	34	0.93
72758--72803	23	2.0	23	100	0	92	13	4	21	60	1.49
73090--73160	25	2.8	24	74	21	65	11	11	12	64	1.49
74019--74377	173	2.1	172	84	5	474	27	21	15	36	1.93
75516--75574	31	2.0	29	83	6	73	33	10	27	28	1.89
79673--79736	31	2.1	31	82	11	78	25	9	12	53	1.68
87884--87926	22	2.0	22	90	0	68	55	0	2	41	1.12
88773--88843	28	2.5	29	77	9	74	32	9	28	29	1.89
88939--89049	30	3.7	31	77	12	124	34	4	26	35	1.77
88884--89041	59	2.7	59	80	6	162	36	5	25	32	1.80
88946--89049	29	3.5	31	78	7	124	35	3	24	36	1.74
101576--101656	30	2.7	30	86	0	108	55	14	4	24	1.59
105991--106029	2	19.5	2	100	0	78	48	0	0	51	1.00
120896--120944	24	2.0	24	84	7	64	40	12	4	42	1.61
147173--147206	5	6.8	5	96	0	59	0	0	14	85	0.60
148196--148220	10	2.5	10	100	0	50	60	20	8	12	1.57
155450--155504	29	1.9	28	81	3	65	1	5	21	70	1.16
155469--155562	43	2.2	43	94	1	161	5	8	21	64	1.41
155471--155556	21	4.1	21	85	10	122	4	9	23	62	1.44
155469--155589	23	5.5	22	78	13	108	4	8	22	64	1.40
155550--155608	12	5.0	12	79	4	66	6	6	20	66	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155472--155579	43	2.5	42	88	5	137	4	8	23	63	1.41
155550--155608	23	2.5	23	86	2	73	6	6	20	66	1.39
156164--156190	6	4.5	6	100	0	54	51	14	0	33	1.43
162233--162262	14	2.1	14	93	0	51	56	0	0	43	0.99
163988--164041	18	3.1	18	79	12	60	46	1	0	51	1.11
170741--170820	39	2.0	40	87	2	117	30	17	20	32	1.95
175625--175708	39	2.2	39	78	10	91	27	19	21	32	1.97
175642--175721	39	2.0	40	90	2	126	30	17	21	31	1.96
179787--179849	34	1.9	33	84	12	85	55	12	6	25	1.60
182069--182108	6	6.7	6	94	0	71	50	32	0	17	1.47
182069--182117	24	2.0	24	92	0	80	48	28	0	22	1.50
182112--182136	10	2.5	10	100	0	50	40	0	16	44	1.47
185936--185995	25	2.4	25	100	0	120	38	11	8	41	1.72
188185--188248	32	2.0	32	100	0	128	21	6	15	56	1.62
202185--202246	22	2.8	22	74	13	56	56	6	0	37	1.25
203116--203170	28	2.0	28	85	7	76	23	12	7	56	1.61
205869--205920	14	3.6	15	78	14	56	50	1	13	34	1.53
209081--209124	21	2.1	21	100	0	88	25	9	22	43	1.82
213446--213553	51	2.2	49	81	8	121	44	9	10	36	1.70
222544--222942	133	3.0	134	95	2	727	40	16	18	24	1.91
229444--229561	32	3.8	32	82	4	159	30	21	17	30	1.96
238285--238328	21	2.1	21	88	12	65	31	0	2	65	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238285--238328	20	2.2	20	88	12	63	31	0	2	65	1.05
240841--240867	2	13.5	2	100	0	54	51	0	0	48	1.00
244161--244195	11	3.0	12	87	8	54	17	8	0	74	1.06
244531--244701	60	2.9	58	81	6	191	23	14	16	45	1.84
249604--249654	25	2.0	25	100	0	102	23	15	21	39	1.92

Tables:   1

The End!