Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012309.1 Kokia drynarioides strain JFW-HI SEQ_127310, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35815
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 65 characters in sequence are not A, C, G, or T
Found at i:164 original size:32 final size:32
Alignment explanation
Indices: 84--151 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
74 TGTATTACGT
*
84 AATT-AAATAAATTATATATTTTTTACTTAAA
1 AATTAAAAAAAATTATATATTTTTTACTTAAA
*
115 AATTAAAAAAAATTATATATTTTTTACTT-TA
1 AATTAAAAAAAATTATATATTTTTTACTTAAA
146 AATTAA
1 AATTAA
152 TGAACAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
31 11 0.32
32 23 0.68
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (32 bp):
AATTAAAAAAAATTATATATTTTTTACTTAAA
Found at i:165 original size:30 final size:31
Alignment explanation
Indices: 84--151 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
74 TGTATTACGT
* *
84 AATTAAATAAATTATATATTTTTTACTTAAA
1 AATTAAAAAAAATATATATTTTTTACTTAAA
*
115 AATTAAAAAAAATTATATATTTTTTACTT-TA
1 AATTAAAAAAAA-TATATATTTTTTACTTAAA
146 AATTAA
1 AATTAA
152 TGAACAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 17 0.52
32 16 0.48
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (31 bp):
AATTAAAAAAAATATATATTTTTTACTTAAA
Found at i:1193 original size:24 final size:24
Alignment explanation
Indices: 1009--1183 Score: 332
Period size: 24 Copynumber: 7.3 Consensus size: 24
999 ACTTTGATAG
*
1009 TTGACTTGTGAAAAGCTTGCTGGT
1 TTGAGTTGTGAAAAGCTTGCTGGT
1033 TTGAGTTGTGAAAAGCTTGCTGGT
1 TTGAGTTGTGAAAAGCTTGCTGGT
1057 TTGAGTTGTGAAAAGCTTGCTGGT
1 TTGAGTTGTGAAAAGCTTGCTGGT
*
1081 TTGGGTTGTGAAAAGCTTGCTGGT
1 TTGAGTTGTGAAAAGCTTGCTGGT
1105 TTGAGTTGTGAAAAGCTTGCTGGT
1 TTGAGTTGTGAAAAGCTTGCTGGT
1129 TTGAGTTGTGAAAAGCTTGCTGGT
1 TTGAGTTGTGAAAAGCTTGCTGGT
1153 TTGAGTTGTGAAAAGCTTGCTGGT
1 TTGAGTTGTGAAAAGCTTGCTGGT
1177 TTGAGTT
1 TTGAGTT
1184 TAGGATAGCT
Statistics
Matches: 148, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 148 1.00
ACGTcount: A:0.20, C:0.09, G:0.33, T:0.38
Consensus pattern (24 bp):
TTGAGTTGTGAAAAGCTTGCTGGT
Found at i:16925 original size:16 final size:16
Alignment explanation
Indices: 16901--16933 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
16891 AATGTGTTCT
*
16901 AAATTACATAATATAA
1 AAATAACATAATATAA
16917 AAATAACATAATATAA
1 AAATAACATAATATAA
16933 A
1 A
16934 GTATTACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (16 bp):
AAATAACATAATATAA
Found at i:20481 original size:26 final size:25
Alignment explanation
Indices: 20435--20487 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 25
20425 TTTTCTATCG
20435 TAAAATTTTTAATTTAATTTCAGCCCC
1 TAAAATTTTT-ATTTAATTTCA-CCCC
*
20462 TAAAATTTTT-TTATAGTTTCACCCC
1 TAAAATTTTTATT-TAATTTCACCCC
20487 T
1 T
20488 GCTCTTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 7 0.29
26 7 0.29
27 10 0.42
ACGTcount: A:0.30, C:0.19, G:0.04, T:0.47
Consensus pattern (25 bp):
TAAAATTTTTATTTAATTTCACCCC
Found at i:31074 original size:23 final size:23
Alignment explanation
Indices: 31054--31155 Score: 134
Period size: 23 Copynumber: 4.3 Consensus size: 23
31044 CTCTCTCTAA
*
31054 TTAGCATTGTGTGTGCCCTCTGT
1 TTAGCACTGTGTGTGCCCTCTGT
31077 TTAGCACTGTGTGTGCCCTCTGT
1 TTAGCACTGTGTGTGCCCTCTGT
*
31100 TTAGCACTGTGTGTGCTCTCTGT
1 TTAGCACTGTGTGTGCCCTCTGT
* *
31123 TTAGCAC-GTCTCGTGCTCTCTGTT
1 TTAGCACTGTGT-GTGCCCTCTG-T
31147 ATTAGCACT
1 -TTAGCACT
31156 TCATGTGCTC
Statistics
Matches: 72, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
22 3 0.04
23 61 0.85
24 1 0.01
25 7 0.10
ACGTcount: A:0.11, C:0.25, G:0.24, T:0.41
Consensus pattern (23 bp):
TTAGCACTGTGTGTGCCCTCTGT
Found at i:31163 original size:25 final size:22
Alignment explanation
Indices: 31065--31176 Score: 107
Period size: 23 Copynumber: 4.8 Consensus size: 22
31055 TAGCATTGTG
* *
31065 TGTGCCCTCTGTTTAGCACTGTG
1 TGTGCTCTCTGTTTAGCAC-GTC
* *
31088 TGTGCCCTCTGTTTAGCACTGTG
1 TGTGCTCTCTGTTTAGCAC-GTC
31111 TGTGCTCTCTGTTTAGCACGTC
1 TGTGCTCTCTGTTTAGCACGTC
*
31133 TCGTGCTCTCTGTTATTAGCACTTC
1 T-GTGCTCTCTG-T-TTAGCACGTC
* *
31158 ATGTGCTCTTTGATTAGCA
1 -TGTGCTCTCTGTTTAGCA
31177 TGCTCAGTAC
Statistics
Matches: 80, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.04
23 57 0.71
24 1 0.01
25 18 0.22
26 1 0.01
ACGTcount: A:0.12, C:0.25, G:0.22, T:0.41
Consensus pattern (22 bp):
TGTGCTCTCTGTTTAGCACGTC
Found at i:31215 original size:23 final size:23
Alignment explanation
Indices: 31185--31269 Score: 77
Period size: 23 Copynumber: 3.7 Consensus size: 23
31175 CATGCTCAGT
31185 ACTTTGTGTACTCTCTGTTTAGC
1 ACTTTGTGTACTCTCTGTTTAGC
* *
31208 ACTTTGTGTGCTCTCTGTTACCTAAC
1 ACTTTGTGTACTCTCTGTT---TAGC
*
31234 ACTTATGTG--CTCTCTGTTTAGT
1 ACTT-TGTGTACTCTCTGTTTAGC
*
31256 ACTTCG-GTACTCTC
1 ACTTTGTGTACTCTC
31270 CATTTGTTTC
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
20 1 0.02
21 1 0.02
22 11 0.22
23 18 0.35
25 9 0.18
26 7 0.14
27 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.16, T:0.45
Consensus pattern (23 bp):
ACTTTGTGTACTCTCTGTTTAGC
Found at i:32759 original size:17 final size:16
Alignment explanation
Indices: 32692--32768 Score: 73
Period size: 17 Copynumber: 4.6 Consensus size: 16
32682 CCCAATCAGC
*
32692 TTAAATTTATTTTAAAA
1 TTAAATTTA-TTTAAAT
*
32709 TTAAGTTTATTCTAAAT
1 TTAAATTTATT-TAAAT
* *
32726 TTAAATTTGGTTGAAAT
1 TTAAATTT-ATTTAAAT
*
32743 TTCAATTTATTATAAAT
1 TTAAATTTATT-TAAAT
32760 TTAAATTTA
1 TTAAATTTA
32769 AAATTTATTA
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
16 4 0.08
17 42 0.88
18 2 0.04
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (16 bp):
TTAAATTTATTTAAAT
Found at i:34758 original size:59 final size:59
Alignment explanation
Indices: 34574--35217 Score: 636
Period size: 59 Copynumber: 10.9 Consensus size: 59
34564 AAAGTCCCTA
* * * *
34574 AACCTTCCAAAAATCACCATTTTTACCCTCAAACTTCCAAAAATCCCATTTTTAACCCCA
1 AACCTTCCAAAAATTACCA-TTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCG
* * * ** * *
34634 AACCTTCAAAAAATTACCATTTTTACCCACGATCTTCCAAAAATCTAATTTTTGACCCCA
1 AACCTTCCAAAAATTACCA-TTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCG
* * ** **
34694 AACCTTCCAAAAATTATCAATTTACCCCCGAACTTCCAAAAATCCCATTCCTAACTTCG
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCG
* * * * *
34753 TACCTTCCAAAAATTACCATTTTATCCCCGAACTCCCAAAAATCCCATTTTTGACCTCG
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCG
* * *
34812 AACCTTCC-AAAATTACCATTTTTGA-CCCCGAACCTTCCAAAAATCCTATTTTTTGACCTCG
1 AACCTTCCAAAAATTACCA-TTTT-ACCCCCGAA-CTTCCAAAAATCCCA-TTTTTAACCCCG
* * *
34873 AA-CTTCCAAAAATTACCAATTTACCCCCAAACTTCCAAAAAATACCA-TTTT-ACTCCC-
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCC-AAAAATCCCATTTTTAAC-CCCG
* * * * *
34930 AAACTCCCAAAAA-TCCCATTTTGGA-CCACGAACCTTCCAAAAATTACCA-TTTT-ACCCTCG
1 AACCTTCCAAAAATTACCATTTT--ACCCCCGAA-CTTCCAAAAA-TCCCATTTTTAACCC-CG
* **
34990 AA-CTCCCAAAAA-T-CTCATTTT-CGACCCCGAACCTTCCAAAAATTATCA-TTTT-ACCCCTG
1 AACCTTCCAAAAATTAC-CATTTTAC--CCCCGAA-CTTCCAAAAA-TCCCATTTTTAACCCC-G
* *
35049 AACCTTCCAAAAATCACCATTTTACCCCCTAACTTCCAAAAATCCCATTTTTAACCCCG
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCG
* *
35108 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCTCATTTTTGACCCCG
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCG
*
35167 AACCTTCCAAAAATTACCATTTTACCTCCGAACTTCCAAAAATCCCATTTT
1 AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTT
35218 CGACCTCGAA
Statistics
Matches: 502, Mismatches: 56, Indels: 53
0.82 0.09 0.09
Matches are distributed among these distances:
57 11 0.02
58 42 0.08
59 290 0.58
60 127 0.25
61 30 0.06
62 2 0.00
ACGTcount: A:0.34, C:0.33, G:0.04, T:0.29
Consensus pattern (59 bp):
AACCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCG
Found at i:34980 original size:207 final size:204
Alignment explanation
Indices: 34580--35257 Score: 750
Period size: 207 Copynumber: 3.3 Consensus size: 204
34570 CCTAAACCTT
* * * * *
34580 CCAAAAATCACCATTTT-TACCCTC-AAACTTCCAAAAATCCCATTTTTAACCCCAAACCTTCAA
1 CCAAAAATC-CCATTTTCGA-CCTCGAAACTTCCAAAATTACCATTTTT-ACCCCGAACCTTCCA
* *
34643 AAAATTACCATTTTTACCCACGATCTTCCAAAAATCTA--ATTTTTGA-CCCCAAACCTTCCAAA
63 AAAA-T-CCATTTTTACCCACGAACTTCCAAAAAT-TACCATTTTTAACCCCCAAA-CTTCCAAA
* * * * ** *
34705 AATTATCAATTTACCCCCGAACTTCCAAAAATCCCATTCCTAACTTCGTACCTTCCAAAAATTAC
124 AATTACCATTTTACCCCCGAACTTCCAAAAATCCCATT-TTGACCACGAACCTTCCAAAAATTAC
34770 CATTTTATCCCCGAACTC
188 CATTTTA-CCCCGAACTC
* *
34788 CCAAAAATCCCATTTTTGACCTCGAACCTTCCAAAATTACCATTTTTGACCCCGAACCTTCCAAA
1 CCAAAAATCCCATTTTCGACCTCGAAACTTCCAAAATTACCATTTTT-ACCCCGAACCTTCCAAA
* * *
34853 AATCCTATTTTTTGA-CCTCGAACTTCCAAAAATTACCA-ATTT-ACCCCCAAACTTCCAAAAAA
65 AATCC-A-TTTTT-ACCCACGAACTTCCAAAAATTACCATTTTTAACCCCCAAACTTCCAAAAAT
* * *
34915 TACCATTTTACTCCCAAACTCCCAAAAATCCCATTTTGGACCACGAACCTTCCAAAAATTACCAT
127 TACCATTTTACCCCCGAACTTCCAAAAATCCCATTTT-GACCACGAACCTTCCAAAAATTACCAT
34980 TTTACCCTCGAACTC
191 TTTACCC-CGAACTC
* * * *
34995 CCAAAAATCTCATTTTCGACCCCGAACCTTCCAAAAATTATCA-TTTTACCCCTGAACCTTCCAA
1 CCAAAAATCCCATTTTCGACCTCGAAACTTCC-AAAATTACCATTTTTACCCC-GAACCTTCCAA
* * * * *
35059 AAATCACCA-TTTTACCCCCTAACTTCCAAAAA-TCCCATTTTTAACCCCGAACCTTCCAAAAAT
64 AAAT--CCATTTTTACCCACGAACTTCCAAAAATTACCATTTTTAACCCCCAAACTTCCAAAAAT
* *
35122 TACCATTTTACCCCCGAACTTCCAAAAATCTCATTTTTGACCCCGAACCTTCCAAAAATTACCAT
127 TACCATTTTACCCCCGAACTTCCAAAAATCCCA-TTTTGACCACGAACCTTCCAAAAATTACCAT
*
35187 TTTACCTCCGAACTT
191 TTTACC-CCGAACTC
*
35202 CCAAAAATCCCATTTTCGACCTCGAAAC-TCTCAAAATTACCTTTTTTACCCTCGAA
1 CCAAAAATCCCATTTTCGACCTCGAAACTTC-CAAAATTACCATTTTTACCC-CGAA
35258 TGTTTTAAAT
Statistics
Matches: 405, Mismatches: 43, Indels: 45
0.82 0.09 0.09
Matches are distributed among these distances:
205 5 0.01
206 43 0.11
207 259 0.64
208 94 0.23
209 4 0.01
ACGTcount: A:0.34, C:0.33, G:0.04, T:0.29
Consensus pattern (204 bp):
CCAAAAATCCCATTTTCGACCTCGAAACTTCCAAAATTACCATTTTTACCCCGAACCTTCCAAAA
ATCCATTTTTACCCACGAACTTCCAAAAATTACCATTTTTAACCCCCAAACTTCCAAAAATTACC
ATTTTACCCCCGAACTTCCAAAAATCCCATTTTGACCACGAACCTTCCAAAAATTACCATTTTAC
CCCGAACTC
Found at i:35237 original size:30 final size:28
Alignment explanation
Indices: 34577--35217 Score: 413
Period size: 30 Copynumber: 21.7 Consensus size: 28
34567 GTCCCTAAAC
34577 CTTCCAAAAATCACCATTTTTACCCTC-AAA
1 CTTCCAAAAATC-CCA-TTTTACCC-CGAAA
34607 CTTCCAAAAATCCCATTTTTAACCCC-AAA
1 CTTCCAAAAATCCCA-TTTT-ACCCCGAAA
* * *
34636 CCTTCAAAAAATTACCATTTTTACCCACG-AT
1 -CTTCCAAAAA-TCCCA-TTTTACCC-CGAAA
**
34667 CTTCCAAAAATCTAATTTTTGACCCC-AAA
1 CTTCCAAAAATCCCA-TTTT-ACCCCGAAA
** *
34696 CCTTCCAAAAATTATCAATTTACCCCCG-AA
1 -CTTCCAAAAA-TCCCATTTTA-CCCCGAAA
* ** * *
34726 CTTCCAAAAATCCCATTCCTAACTTCGTAC
1 CTTCCAAAAATCCCATT--TTACCCCGAAA
*
34756 CTTCCAAAAATTACCATTTTATCCCCG-AA
1 CTTCCAAAAA-TCCCATTTTA-CCCCGAAA
* * *
34785 CTCCCAAAAATCCCATTTTTGACCTCGAAC
1 CTTCCAAAAATCCCA-TTTT-ACCCCGAAA
* * *
34815 CTTCCAAAATTACCATTTTTGACCCCGAAC
1 CTTCCAAAAATCCCA-TTTT-ACCCCGAAA
* *
34845 CTTCCAAAAATCCTATTTTTTGACCTCG-AA
1 CTTCCAAAAATCCCA--TTTT-ACCCCGAAA
* * *
34875 CTTCCAAAAATTACCAATTTACCCCCAAA
1 CTTCCAAAAA-TCCCATTTTACCCCGAAA
*
34904 CTTCCAAAAAATACCATTTTACTCCC-AAA
1 CTTCC-AAAAATCCCATTTTAC-CCCGAAA
* * *
34933 CTCCCAAAAATCCCATTTTGGACCACGAAC
1 CTTCCAAAAATCCCATTTT--ACCCCGAAA
*
34963 CTTCCAAAAATTACCATTTTACCCTCG-AA
1 CTTCCAAAAA-TCCCATTTTACCC-CGAAA
* * *
34992 CTCCCAAAAATCTCATTTTCGACCCCGAAC
1 CTTCCAAAAATCCCATTTT--ACCCCGAAA
** *
35022 CTTCCAAAAATTATCATTTTACCCCTGAAC
1 CTTCCAAAAA-TCCCATTTTACCCC-GAAA
**
35052 CTTCCAAAAATCACCATTTTACCCCCTAA
1 CTTCCAAAAATC-CCATTTTACCCCGAAA
*
35081 CTTCCAAAAATCCCATTTTTAACCCCGAAC
1 CTTCCAAAAATCCCA-TTTT-ACCCCGAAA
*
35111 CTTCCAAAAATTACCATTTTACCCCCG-AA
1 CTTCCAAAAA-TCCCATTTTA-CCCCGAAA
* *
35140 CTTCCAAAAATCTCATTTTTGACCCCGAAC
1 CTTCCAAAAATCCCA-TTTT-ACCCCGAAA
*
35170 CTTCCAAAAATTACCATTTTACCTCCG-AA
1 CTTCCAAAAA-TCCCATTTTACC-CCGAAA
35199 CTTCCAAAAATCCCATTTT
1 CTTCCAAAAATCCCATTTT
35218 CGACCTCGAA
Statistics
Matches: 494, Mismatches: 73, Indels: 90
0.75 0.11 0.14
Matches are distributed among these distances:
28 46 0.09
29 157 0.32
30 234 0.47
31 57 0.12
ACGTcount: A:0.34, C:0.33, G:0.04, T:0.29
Consensus pattern (28 bp):
CTTCCAAAAATCCCATTTTACCCCGAAA
Found at i:35237 original size:148 final size:147
Alignment explanation
Indices: 34574--35237 Score: 655
Period size: 148 Copynumber: 4.5 Consensus size: 147
34564 AAAGTCCCTA
* * *
34574 AACCTTCCAAAAATCACCATTTTTACCCTCAAACTTCCAAAAATCCCATTTTTAACCCCAAAC-C
1 AACCTTCCAAAAATTACCA-TTTTACCC-CGAACTTCCAAAAATCCCA-TTTTACCCCCAAACTC
* * *
34638 TTCAAAAAATTACCATTTTT-ACCCACG-ATCTTCCAAAAATCTA--ATTTTTGACCCCAAACCT
63 -TC-AAAAA-TCCCATTTTTGACCC-CGAACCTTCCAAAAAT-TACCATTTTTGACCCCGAACCT
* *
34699 TCCAAAAATTATCA-ATTT-ACCCCCG
123 TCCAAAAA-TCTCATTTTTGA-CCCCG
* * ** * * * *
34724 AA-CTTCCAAAAA-TCCCATTCCTAACTTCGTACCTTCCAAAAATTACCATTTTATCCCCGAACT
1 AACCTTCCAAAAATTACCATT--TTACCCCG-AACTTCCAAAAA-TCCCATTTTACCCCCAAACT
* *
34787 CCCAAAAATCCCATTTTTGACCTCGAACCTTCC-AAAATTACCATTTTTGACCCCGAACCTTCCA
62 CTCAAAAATCCCATTTTTGACCCCGAACCTTCCAAAAATTACCATTTTTGACCCCGAACCTTCCA
*
34851 AAAATC-CTATTTTTTGACCTCG
127 AAAATCTC-A-TTTTTGACCCCG
* * * * *
34873 AA-CTTCCAAAAATTACCAATTTACCCCCAAACTTCCAAAAAATACCATTTTACTCCCAAACTCC
1 AACCTTCCAAAAATTACCATTTTA-CCCCGAACTTCC-AAAAATCCCATTTTACCCCCAAACTCT
* * *
34937 CAAAAATCCCATTTTGGACCACGAACCTTCCAAAAATTACCA-TTTT-ACCCTCGAA-CTCCCAA
64 CAAAAATCCCATTTTTGACCCCGAACCTTCCAAAAATTACCATTTTTGACCC-CGAACCTTCCAA
*
34999 AAATCTCATTTTCGACCCCG
128 AAATCTCATTTTTGACCCCG
* *
35019 AACCTTCCAAAAATTATCATTTTACCCCTGAACCTTCCAAAAATCACCATTTTACCCCCTAACT-
1 AACCTTCCAAAAATTACCATTTTACCCC-GAA-CTTCCAAAAATC-CCATTTTACCCCCAAACTC
*
35083 TCCAAAAATCCCATTTTTAACCCCGAACCTTCCAAAAATTACCA-TTTT-ACCCCCGAA-CTTCC
63 T-CAAAAATCCCATTTTTGACCCCGAACCTTCCAAAAATTACCATTTTTGA-CCCCGAACCTTCC
35145 AAAAATCTCATTTTTGACCCCG
126 AAAAATCTCATTTTTGACCCCG
* *
35167 AACCTTCCAAAAATTACCATTTTACCTCCGAACTTCCAAAAATCCCATTTTCGACCTCGAAACTC
1 AACCTTCCAAAAATTACCATTTTACC-CCGAACTTCCAAAAATCCCATTTT--ACCCCCAAACTC
35232 TCAAAA
63 TCAAAA
35238 TTACCTTTTT
Statistics
Matches: 436, Mismatches: 49, Indels: 60
0.80 0.09 0.11
Matches are distributed among these distances:
146 26 0.06
147 75 0.17
148 243 0.56
149 79 0.18
150 13 0.03
ACGTcount: A:0.34, C:0.33, G:0.04, T:0.28
Consensus pattern (147 bp):
AACCTTCCAAAAATTACCATTTTACCCCGAACTTCCAAAAATCCCATTTTACCCCCAAACTCTCA
AAAATCCCATTTTTGACCCCGAACCTTCCAAAAATTACCATTTTTGACCCCGAACCTTCCAAAAA
TCTCATTTTTGACCCCG
Done.