Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012312.1 Kokia drynarioides strain JFW-HI SEQ_127313, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62548
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Found at i:16534 original size:44 final size:44
Alignment explanation
Indices: 16484--16579 Score: 129
Period size: 44 Copynumber: 2.2 Consensus size: 44
16474 TTGCCATTTT
* * * * *
16484 GGCTTGCACCCACTCGATCTTGCATTTATACTGTCCGCCGCTTC
1 GGCTTGCACCCACTCGATCTTGCAATTAGACCGTCCGCCACCTC
* *
16528 GGCTTGCACCCACTCGGTTTTGCAATTAGACCGTCCGCCACCTC
1 GGCTTGCACCCACTCGATCTTGCAATTAGACCGTCCGCCACCTC
16572 GGCTTGCA
1 GGCTTGCA
16580 ATTCGATAGG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.15, C:0.36, G:0.21, T:0.28
Consensus pattern (44 bp):
GGCTTGCACCCACTCGATCTTGCAATTAGACCGTCCGCCACCTC
Found at i:16648 original size:29 final size:29
Alignment explanation
Indices: 16606--16673 Score: 127
Period size: 29 Copynumber: 2.3 Consensus size: 29
16596 CTTTGACAGA
*
16606 CTCGCACTTTGCTTGCTGTCTTCAATAGG
1 CTCGCACTCTGCTTGCTGTCTTCAATAGG
16635 CTCGCACTCTGCTTGCTGTCTTCAATAGG
1 CTCGCACTCTGCTTGCTGTCTTCAATAGG
16664 CTCGCACTCT
1 CTCGCACTCT
16674 ACAGCTCGCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.13, C:0.32, G:0.19, T:0.35
Consensus pattern (29 bp):
CTCGCACTCTGCTTGCTGTCTTCAATAGG
Found at i:23205 original size:12 final size:12
Alignment explanation
Indices: 23177--23209 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
23167 GGGGCAATAG
*
23177 TCTTCCT-CTCC
1 TCTTCCTCCTCA
23188 TCTTCCTCCTCA
1 TCTTCCTCCTCA
23200 TCTTCCTCCT
1 TCTTCCTCCT
23210 AAAGGCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 7 0.35
12 13 0.65
ACGTcount: A:0.03, C:0.52, G:0.00, T:0.45
Consensus pattern (12 bp):
TCTTCCTCCTCA
Found at i:26331 original size:19 final size:19
Alignment explanation
Indices: 26289--26341 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 19
26279 AACTAATTGA
* *
26289 AATAGATTTTGTAAACTTTT
1 AATA-ATTTTTTAAAATTTT
26309 AAT-ATTTTTTAAAATTTT
1 AATAATTTTTTAAAATTTT
26327 AAATAATTTATTTAA
1 -AATAATTT-TTTAA
26342 TTGGAACTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 13 0.46
19 3 0.11
20 7 0.25
21 5 0.18
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (19 bp):
AATAATTTTTTAAAATTTT
Found at i:42529 original size:46 final size:46
Alignment explanation
Indices: 42462--42556 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
42452 AGGTACTGAA
* *
42462 AAGTTTACAAATTGGGCTAAATGGAAGAAGACTAGTCTCGGTCTTT
1 AAGTTTACAAACTAGGCTAAATGGAAGAAGACTAGTCTCGGTCTTT
42508 AAGTTTACAAACTAGGCTAAATGGAAGAAGACTAGTCTCGGTCTTT
1 AAGTTTACAAACTAGGCTAAATGGAAGAAGACTAGTCTCGGTCTTT
42554 AAG
1 AAG
42557 CAATGTTCCA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (46 bp):
AAGTTTACAAACTAGGCTAAATGGAAGAAGACTAGTCTCGGTCTTT
Found at i:47728 original size:88 final size:88
Alignment explanation
Indices: 47643--47823 Score: 219
Period size: 88 Copynumber: 2.0 Consensus size: 88
47633 TAATTTTGAG
* *
47643 AGTTTC-GAGGTCGAAAAT-AGAGTTTTTGGACA-TCCGGGGGT-AAAATGGTAA-TTTTTGGAA
1 AGTTTCGGA-GTCAAAAATGAGA-TTTTTGGA-AGTCCGGGGGTAAAAAT--AAATTTTTTGGAA
47703 GTCTCGGGGTCAAAACGGAATTTTTGGA
61 GTCTCGGGGTCAAAACGGAATTTTTGGA
* *
47731 AGTTTCGGAGTCAAAAATGAGATTTTTGGAAGTTCGGGGGTAAAAATAAATTTTTTGGAAGTTTC
1 AGTTTCGGAGTCAAAAATGAGATTTTTGGAAGTCCGGGGGTAAAAATAAATTTTTTGGAAGTCTC
* *
47796 GGGGTCAAAAATGGGATTTTTGGA
66 GGGGTC-AAAACGGAATTTTTGGA
47820 AGTT
1 AGTT
47824 CGAGGTAAAA
Statistics
Matches: 81, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
87 3 0.04
88 49 0.60
89 29 0.36
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.33
Consensus pattern (88 bp):
AGTTTCGGAGTCAAAAATGAGATTTTTGGAAGTCCGGGGGTAAAAATAAATTTTTTGGAAGTCTC
GGGGTCAAAACGGAATTTTTGGA
Found at i:47756 original size:59 final size:57
Alignment explanation
Indices: 47693--47853 Score: 207
Period size: 59 Copynumber: 2.7 Consensus size: 57
47683 TAAAATGGTA
**
47693 ATTTTTGGAAGTCTCGGGGTCAAAACGGAATTTTTGGAAGTTTCGGAGTCAAAAATGAG
1 ATTTTTGGAAGT-TCGGGGT-AAAACAAAATTTTTGGAAGTTTCGGAGTCAAAAATGAG
* *
47752 ATTTTTGGAAGTTCGGGGGTAAAA-ATAAATTTTTTGGAAGTTTCGGGGTCAAAAATGGG
1 ATTTTTGGAAGTTC-GGGGTAAAACA-AAA-TTTTTGGAAGTTTCGGAGTCAAAAATGAG
*
47811 ATTTTTGGAAGTTCGAGGTAAAAACAAAATTTTTGGACAGTTT
1 ATTTTTGGAAGTTCGGGGT-AAAACAAAATTTTTGGA-AGTTT
47854 AGGGACCTCT
Statistics
Matches: 91, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
58 20 0.22
59 70 0.77
60 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.27, T:0.34
Consensus pattern (57 bp):
ATTTTTGGAAGTTCGGGGTAAAACAAAATTTTTGGAAGTTTCGGAGTCAAAAATGAG
Found at i:47758 original size:30 final size:30
Alignment explanation
Indices: 47693--47853 Score: 163
Period size: 29 Copynumber: 5.5 Consensus size: 30
47683 TAAAATGGTA
* **
47693 ATTTTTGGAAGTCTCGGGGTCAAAACGGA-
1 ATTTTTGGAAGTTTCGGGGTCAAAAATGAG
*
47722 ATTTTTGGAAGTTTCGGAGTCAAAAATGAG
1 ATTTTTGGAAGTTTCGGGGTCAAAAATGAG
*
47752 ATTTTTGGAAG-TTCGGGGGT-AAAAAT-AA
1 ATTTTTGGAAGTTTC-GGGGTCAAAAATGAG
*
47780 ATTTTTTGGAAGTTTCGGGGTCAAAAATGGG
1 A-TTTTTGGAAGTTTCGGGGTCAAAAATGAG
* ** *
47811 ATTTTTGGAAG-TTCGAGGT-AAAAACAAA
1 ATTTTTGGAAGTTTCGGGGTCAAAAATGAG
47839 ATTTTTGGACAGTTT
1 ATTTTTGGA-AGTTT
47854 AGGGACCTCT
Statistics
Matches: 111, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
28 16 0.14
29 58 0.52
30 36 0.32
31 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.27, T:0.34
Consensus pattern (30 bp):
ATTTTTGGAAGTTTCGGGGTCAAAAATGAG
Found at i:48679 original size:25 final size:27
Alignment explanation
Indices: 48626--48679 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 27
48616 TCAGGTAAGG
* **
48626 TTTTCCATTTCCGTCTTTTAAAACCCA
1 TTTTCCATTTCAGTCTTTTAAAAAACA
48653 TTTTCC-TTTCAGT-TTTTAAAAAACA
1 TTTTCCATTTCAGTCTTTTAAAAAACA
48678 TT
1 TT
48680 CTTAAAACCC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 12 0.50
26 6 0.25
27 6 0.25
ACGTcount: A:0.26, C:0.22, G:0.04, T:0.48
Consensus pattern (27 bp):
TTTTCCATTTCAGTCTTTTAAAAAACA
Found at i:48911 original size:12 final size:12
Alignment explanation
Indices: 48896--48947 Score: 68
Period size: 12 Copynumber: 4.3 Consensus size: 12
48886 AATTAATGCC
48896 ATTATTAATATT
1 ATTATTAATATT
48908 ATTATTAATATT
1 ATTATTAATATT
* *
48920 ATTATTATTATC
1 ATTATTAATATT
* *
48932 GTCATTAATATT
1 ATTATTAATATT
48944 ATTA
1 ATTA
48948 ATGACATTTT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (12 bp):
ATTATTAATATT
Found at i:48947 original size:3 final size:3
Alignment explanation
Indices: 48896--48930 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
48886 AATTAATGCC
* *
48896 ATT ATT AAT ATT ATT ATT AAT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
48931 CGTCATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:48955 original size:18 final size:18
Alignment explanation
Indices: 48899--48955 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
48889 TAATGCCATT
* * *
48899 ATTAATATTATTATTAAT
1 ATTAATATTATTAATGAC
* *
48917 ATTATTATTATT-ATCGTC
1 ATTAATATTATTAAT-GAC
48935 ATTAATATTATTAATGAC
1 ATTAATATTATTAATGAC
48953 ATT
1 ATT
48956 TTGAAACATG
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
17 1 0.03
18 27 0.90
19 2 0.07
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.53
Consensus pattern (18 bp):
ATTAATATTATTAATGAC
Found at i:49479 original size:19 final size:18
Alignment explanation
Indices: 49422--49476 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
49412 TCCAAGATTG
49422 TAATTTGGACTTTGT-ATT
1 TAATTTGGACTTT-TAATT
*
49440 TATTTTGGACTTTTAATT
1 TAATTTGGACTTTTAATT
*
49458 TAATTTGGGCTTTTAATT
1 TAATTTGGACTTTTAATT
49476 T
1 T
49477 TAAATATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
17 1 0.03
18 32 0.97
ACGTcount: A:0.22, C:0.05, G:0.15, T:0.58
Consensus pattern (18 bp):
TAATTTGGACTTTTAATT
Found at i:49494 original size:15 final size:15
Alignment explanation
Indices: 49474--49524 Score: 50
Period size: 15 Copynumber: 3.1 Consensus size: 15
49464 GGGCTTTTAA
49474 TTTTAAATATTAAAT
1 TTTTAAATATTAAAT
49489 TTTTAAATCCATTCAAAT
1 TTTTAAAT--ATT-AAAT
49507 TTGATTAAAT-TTAAAT
1 TT--TTAAATATTAAAT
49523 TT
1 TT
49525 AAAGCAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
15 8 0.26
16 6 0.19
17 5 0.16
18 6 0.19
20 6 0.19
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.51
Consensus pattern (15 bp):
TTTTAAATATTAAAT
Found at i:50284 original size:204 final size:201
Alignment explanation
Indices: 49917--50561 Score: 844
Period size: 204 Copynumber: 3.2 Consensus size: 201
49907 TCTGGTTTCA
* * * ** ** * *
49917 TTGACTTGGCCTTCTTCTCAGTATCTCATCCGGAAGATGACCATATCACTTGTTTTGATCCACTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCACGTCGTTTGTTTTAATCCGCTT
* * * * * * * * * *
49982 CTCCGTGTTTCATCAAGAAGA-TAATTTTGGTTTACTTCCCCGTATTTCATCAGGAAGCTAAACG
66 CTCTGTATCTCATCAGGAAGACGAA-TTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCG
* * * * *
50046 TTTTATTACTTCGACCTGCTTCTCAGTATCTCATCATGAAGCTGGGGTTCGAAGATTCGTTCATC
130 TTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGTTGGGGTTCGAAGATT--TGC-TC
*
50111 GCGCGTAGGT
192 GAGCGTAGGT
* *
50121 TTGATTTGGTCCTCTTCTCAGTATCTCATCAGGAAGATGACCACGTCGTTTGTTTCAATCCGCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCACGTCGTTTGTTTTAATCCGCTT
*
50186 CTCTGTATCTCATCAGGAAGACGAGTTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCGT
66 CTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCGT
* * * *
50251 TTTATTGCTTCGACTTGCTTCTCGGTGTCTCATCAGGGAGTTGGGGTTTGAAGATTTGCTCGAGC
131 TTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGTTGGGGTTCGAAGATTTGCTCGAGC
*
50316 GTGGGT
196 GTAGGT
** * ** *
50322 TTGATTTGGTCTTCTTCTTGGTATCTCATCAGGAATATGACTGCGTCGTTTGTTTTAATTCGCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCACGTCGTTTGTTTTAATCCGCTT
* *
50387 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCATTATCTCATCAGGAAGCTAACC-T
66 CTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCGT
* *
50451 TTTATTGCTTCGACCTGCTTCTCAGTGTCTCATAAGGAAGTTGGGGTTCGAAGATTTGCTTGAGC
131 TTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGTTGGGGTTCGAAGATTTGCTCGAGC
50516 GTAGGT
196 GTAGGT
*
50522 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGGAGATGA
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGA
50562 TCGTGTCGTT
Statistics
Matches: 385, Mismatches: 55, Indels: 6
0.86 0.12 0.01
Matches are distributed among these distances:
200 101 0.26
201 127 0.33
202 2 0.01
204 154 0.40
205 1 0.00
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (201 bp):
TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCACGTCGTTTGTTTTAATCCGCTT
CTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCGT
TTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGTTGGGGTTCGAAGATTTGCTCGAGC
GTAGGT
Found at i:51089 original size:27 final size:27
Alignment explanation
Indices: 51059--51119 Score: 104
Period size: 27 Copynumber: 2.2 Consensus size: 27
51049 TTCAAAAATT
51059 ATATTAAAAAGAGGATCAAAGGAAACA
1 ATATTAAAAAGAGGATCAAAGGAAACA
*
51086 ATATTAAAAATAGGATCAAAGGAAACA
1 ATATTAAAAAGAGGATCAAAGGAAACA
51113 ATCATTA
1 AT-ATTA
51120 GTTGAAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 28 0.88
28 4 0.12
ACGTcount: A:0.57, C:0.08, G:0.15, T:0.20
Consensus pattern (27 bp):
ATATTAAAAAGAGGATCAAAGGAAACA
Found at i:61872 original size:29 final size:29
Alignment explanation
Indices: 61768--62000 Score: 175
Period size: 29 Copynumber: 7.9 Consensus size: 29
61758 AGAGTTTCGA
* * *
61768 GGTTGAAAATGGAGTTTTTGGACA-TTCGG
1 GGTTAAAAATGGAATTTTTGGA-AGTTTGG
* * *
61797 GGGT-AAAATGGTAATTTTTAGAAGTCTTGT
1 GGTTAAAAATGG-AATTTTTGGAAGT-TTGG
* *
61827 GGTCAAAAATGGAATTTTTAGAAGTTTGG
1 GGTTAAAAATGGAATTTTTGGAAGTTTGG
* * *
61856 GGTTAAAATTGGGATTTTTGGAAGTTCGG
1 GGTTAAAAATGGAATTTTTGGAAGTTTGG
* *** *
61885 GGGTAAAAACAAAATTTTTGGAAGTTTCGA
1 GGTTAAAAATGGAATTTTTGGAAGTTT-GG
* * *
61915 GGTCAAAAATGGGATTTTTGGAAGTTCGG
1 GGTTAAAAATGGAATTTTTGGAAGTTTGG
** *
61944 GACTAAAAATGGAATTTTTGGAAGTTTTGA
1 GGTTAAAAATGGAATTTTTGGAAG-TTTGG
* *
61974 GG-TAAAAACGAAATTTTTGGACAGTTT
1 GGTTAAAAATGGAATTTTTGGA-AGTTT
62001 AGGGACCTTC
Statistics
Matches: 159, Mismatches: 38, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
28 8 0.05
29 100 0.63
30 44 0.28
31 7 0.04
ACGTcount: A:0.32, C:0.05, G:0.28, T:0.35
Consensus pattern (29 bp):
GGTTAAAAATGGAATTTTTGGAAGTTTGG
Found at i:61873 original size:59 final size:58
Alignment explanation
Indices: 61827--61999 Score: 181
Period size: 59 Copynumber: 3.0 Consensus size: 58
61817 GAAGTCTTGT
* * * *
61827 GGTCAAAAATGGAATTTTTAGAAGTTT-GGGGTTAAAATTGGGATTTTTGGAAGTTCGGG
1 GGTCAAAAATGGAATTTTTGGAAGTTTCGAGGTCAAAAATGGGATTTTTGGAAGTTC--G
***
61886 GGT-AAAAACAAAATTTTTGGAAGTTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCG
1 GGTCAAAAATGGAATTTTTGGAAGTTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCG
* * * **
61943 GGACTAAAAATGGAATTTTTGGAAGTTTTGAGGT-AAAAACGAAATTTTTGGACAGTT
1 GGTC-AAAAATGGAATTTTTGGAAGTTTCGAGGTCAAAAATGGGATTTTTGGA-AGTT
62000 TAGGGACCTT
Statistics
Matches: 95, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
57 3 0.03
58 34 0.36
59 58 0.61
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.34
Consensus pattern (58 bp):
GGTCAAAAATGGAATTTTTGGAAGTTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCG
Found at i:61874 original size:88 final size:88
Alignment explanation
Indices: 61773--62000 Score: 244
Period size: 88 Copynumber: 2.6 Consensus size: 88
61763 TTCGAGGTTG
* **** *
61773 AAAATGGAGTTTTTGGACA-TTCGGGGGTAAAATGGTAATTTTTAGAAGTCTT-GTGGTCAAAAA
1 AAAATGGAATTTTTGGA-AGTTCGGGGGTAAAAACAAAATTTTTAGAAGT-TTCGAGGTCAAAAA
* **
61836 TGGAATTTTTAGAAGTTTGGGGTTA
64 TGGAATTTTTAGAAGTTCGGGACTA
* * *
61861 AAATTGGGATTTTTGGAAGTTCGGGGGTAAAAACAAAATTTTTGGAAGTTTCGAGGTCAAAAATG
1 AAAATGGAATTTTTGGAAGTTCGGGGGTAAAAACAAAATTTTTAGAAGTTTCGAGGTCAAAAATG
* *
61926 GGATTTTTGGAAGTTCGGGACTA
66 GAATTTTTAGAAGTTCGGGACTA
** * * *
61949 AAAATGGAATTTTTGGAAGTTTTGAGGTAAAAACGAAATTTTTGGACAGTTT
1 AAAATGGAATTTTTGGAAGTTCGGGGGTAAAAACAAAATTTTTAGA-AGTTT
62001 AGGGACCTTC
Statistics
Matches: 117, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
87 3 0.03
88 109 0.93
89 5 0.04
ACGTcount: A:0.32, C:0.05, G:0.28, T:0.35
Consensus pattern (88 bp):
AAAATGGAATTTTTGGAAGTTCGGGGGTAAAAACAAAATTTTTAGAAGTTTCGAGGTCAAAAATG
GAATTTTTAGAAGTTCGGGACTA
Done.