genome.fa.s12313.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012313.1 Kokia drynarioides strain JFW-HI SEQ_127314, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121938

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--48	3	16.3	3	95	4	89	31	0	0	68	0.90
392--440	9	5.5	8	80	20	53	26	2	0	71	0.97
399--440	8	4.6	10	80	19	56	26	0	0	73	0.83
385--483	18	5.6	18	75	11	80	36	1	1	61	1.10
372--482	18	6.3	19	72	16	60	38	1	0	58	1.15
451--503	20	2.8	20	85	5	65	33	0	5	60	1.20
961--1017	22	2.9	21	70	15	50	45	1	8	43	1.45
4609--4667	30	2.0	28	87	6	82	42	1	5	50	1.34
10603--10702	50	2.0	51	82	5	123	31	16	9	44	1.78
12381--12472	48	1.9	47	89	8	141	47	18	20	13	1.81
12381--12568	23	8.4	23	75	14	135	44	21	22	11	1.84
13567--13658	33	2.7	33	91	3	139	9	29	4	56	1.51
20934--21010	23	3.3	23	88	0	118	35	3	12	48	1.60
22961--23003	6	7.2	6	89	0	59	48	0	30	20	1.50
23107--23209	37	2.7	38	74	6	91	24	18	25	32	1.97
28198--28285	44	2.0	45	84	6	117	27	20	1	51	1.55
28697--28746	22	2.3	22	85	0	64	46	4	2	48	1.32
29419--29476	21	2.8	21	70	0	53	29	6	22	41	1.80
29984--30012	2	14.5	2	100	0	58	48	0	0	51	1.00
30123--30154	13	2.5	13	94	0	55	31	21	0	46	1.52
32145--32206	33	1.9	31	87	6	88	25	9	14	50	1.73
34044--34085	18	2.3	18	80	8	50	30	16	26	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39464--39503	15	2.7	15	84	0	53	15	5	2	77	1.04
51045--51090	18	2.6	18	86	10	60	4	17	0	78	0.91
58204--58397	97	2.0	97	88	0	289	38	15	19	26	1.92
58690--59071	29	13.2	30	80	10	372	36	2	24	36	1.69
58690--59050	86	4.2	88	81	9	390	36	1	24	37	1.67
60798--60862	6	11.3	6	77	21	68	53	1	3	41	1.25
60796--60858	11	5.6	11	75	20	60	50	1	3	44	1.27
60798--60873	17	4.5	17	86	6	109	55	2	2	39	1.28
60798--60873	34	2.2	34	92	0	125	55	2	2	39	1.28
60813--60862	23	2.2	23	85	7	66	54	2	2	42	1.23
61323--61921	39	15.4	39	71	3	206	25	20	30	24	1.99
61271--61968	78	9.0	78	78	5	500	25	20	29	24	1.99
61287--61970	156	4.4	156	76	6	562	25	20	30	23	1.98
71772--71962	97	2.0	97	88	4	287	37	15	19	27	1.92
72235--72501	29	9.2	29	72	13	149	37	2	22	36	1.70
72264--72484	57	3.8	58	80	7	200	37	2	23	37	1.67
72235--72441	87	2.4	86	75	12	199	37	2	23	36	1.70
74171--74267	6	17.3	6	74	14	82	55	2	2	40	1.23
74183--74296	17	6.7	17	85	3	149	58	4	0	35	1.24
74201--74287	6	15.0	6	73	7	54	58	4	0	36	1.19
74202--74297	35	2.8	35	91	1	149	60	5	0	34	1.19
88064--88103	12	3.5	12	78	21	50	75	0	7	17	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88064--88103	17	2.4	16	87	8	53	75	0	7	17	1.03
99393--99455	17	3.6	17	82	2	72	50	11	17	20	1.76
103947--104138	59	3.2	58	83	5	199	36	3	25	34	1.72
104001--104150	29	5.1	28	78	16	144	34	4	28	33	1.76
103996--104146	59	2.5	59	86	5	207	33	3	27	35	1.75
103996--104150	30	5.2	29	76	16	158	33	3	28	34	1.76
105048--105093	19	2.3	20	88	7	67	41	2	2	54	1.25
105069--105122	16	3.6	16	69	19	53	46	3	0	50	1.19
105048--105104	19	2.9	19	84	5	60	40	3	1	54	1.28
105734--105782	15	3.3	15	85	0	71	14	14	30	40	1.85
105815--105893	17	4.8	16	76	7	77	51	5	0	43	1.23
105815--105887	34	2.2	33	87	7	103	53	4	0	42	1.20
106924--106969	19	2.3	20	88	7	67	41	2	2	54	1.25
106945--106998	16	3.6	16	69	19	53	46	3	0	50	1.19
106924--106980	19	2.9	19	84	5	60	40	3	1	54	1.28
107610--107658	15	3.3	15	85	0	71	14	14	30	40	1.85
107691--107769	17	4.8	16	76	7	77	51	5	0	43	1.23
107691--107763	34	2.2	33	87	7	103	53	4	0	42	1.20
108145--108787	206	3.1	206	87	2	866	20	23	21	35	1.96
120543--120605	28	2.2	28	82	2	72	23	11	31	33	1.90
120679--120872	29	6.6	29	79	11	191	31	5	28	34	1.79
120716--120872	59	2.6	58	88	5	208	31	4	28	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121895--121938	21	2.2	20	88	8	63	40	2	2	54	1.25

Tables:   1

The End!