genome.fa.s12314.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012314.1 Kokia drynarioides strain JFW-HI SEQ_127315, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102620

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5990--7090	208	5.3	207	85	3	1300	37	17	21	23	1.94
6410--6567	85	1.9	85	81	2	192	32	17	24	24	1.97
6619--6775	84	1.9	85	85	4	219	36	17	22	22	1.94
6827--6994	85	2.0	85	85	9	227	38	16	22	23	1.93
9337--9438	38	2.6	39	75	10	109	24	19	26	29	1.98
9336--9442	37	2.8	38	77	5	117	24	18	26	30	1.98
11820--11889	26	2.7	26	78	13	72	21	12	1	64	1.35
12928--12958	3	10.3	3	100	0	62	67	0	0	32	0.91
19315--19464	73	2.1	73	100	0	300	26	17	18	38	1.92
24226--24453	30	7.7	29	80	8	255	33	28	4	33	1.78
24225--24470	59	4.2	59	87	3	343	33	28	4	32	1.79
24407--24506	51	1.9	52	84	6	132	32	25	7	36	1.83
26693--26770	41	1.9	41	82	10	97	47	12	12	26	1.78
28636--28666	14	2.2	14	94	0	53	83	16	0	0	0.64
32888--32918	9	3.3	9	95	4	53	29	0	3	67	1.06
32887--32921	10	3.6	10	88	7	54	31	0	2	65	1.07
34181--34240	27	2.2	27	82	11	70	28	8	28	35	1.86
34230--34723	29	17.1	29	66	18	117	37	3	26	33	1.72
34386--34630	29	8.5	29	72	16	127	40	3	23	33	1.71
34231--34638	61	7.0	56	77	12	324	38	3	25	32	1.73
34231--34710	57	8.3	56	73	15	288	37	3	25	33	1.72
34642--34723	30	2.7	31	77	7	98	31	1	29	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35140--35242	17	6.1	16	79	9	107	41	0	3	53	1.26
35167--35246	6	14.0	6	70	15	62	43	1	2	52	1.22
35139--35246	34	3.2	33	80	7	128	42	0	3	52	1.25
35170--35214	23	2.0	23	86	8	65	42	2	4	51	1.34
35142--35242	51	2.0	51	88	0	148	42	0	3	52	1.26
35949--36002	21	2.5	21	84	3	81	57	3	1	37	1.27
37042--37221	29	6.1	29	79	11	179	39	24	2	33	1.70
37042--37201	30	5.5	29	80	8	146	38	24	3	34	1.71
37041--37235	59	3.3	59	86	3	243	37	26	2	33	1.70
38633--38670	17	2.2	18	95	4	69	60	5	0	34	1.19
40865--40893	3	9.7	3	100	0	58	0	31	0	68	0.89
41560--41604	23	2.0	22	82	4	54	44	4	2	48	1.35
49919--49976	18	3.1	18	76	13	55	60	5	5	29	1.40
54179--54230	26	1.9	28	88	7	81	25	1	5	67	1.23
54585--54654	31	2.3	31	82	5	79	45	4	8	41	1.54
56022--56116	31	3.1	30	73	10	84	41	7	8	43	1.63
66690--66837	30	5.0	29	82	8	172	35	4	17	42	1.68
66690--66837	60	2.5	60	87	4	201	35	4	17	42	1.68
66750--66847	30	3.3	30	82	5	126	35	5	21	37	1.76
68407--68584	50	3.6	50	89	0	275	20	17	17	44	1.87
68593--68753	40	4.1	39	82	10	166	22	17	27	32	1.96
68806--68934	50	2.5	51	87	1	179	18	24	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68806--68951	50	2.9	49	80	7	150	20	21	19	37	1.94
80431--80616	30	6.2	29	79	7	174	33	4	20	41	1.72
80431--80581	61	2.5	60	84	8	182	34	3	19	42	1.68
95469--95495	7	3.9	7	100	0	54	14	0	70	14	1.17
98517--98695	89	2.0	89	98	0	349	50	16	14	18	1.78
99881--99914	13	2.6	13	85	0	50	58	11	0	29	1.33
100888--100927	17	2.4	16	88	12	55	2	12	2	82	0.87
100844--100928	17	4.7	17	68	30	52	5	12	2	78	1.02
101815--101952	45	3.1	44	63	15	104	61	7	12	18	1.53
101777--101965	88	2.1	89	94	2	326	61	6	13	17	1.54
101990--102037	19	2.5	19	82	0	60	25	4	0	70	1.04
101993--102036	9	4.8	9	77	5	52	22	4	0	72	1.02
101990--102036	10	4.9	10	79	7	53	25	4	0	70	1.05
102049--102085	19	2.0	18	89	5	56	78	0	2	18	0.87

Tables:   1

The End!