Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012315.1 Kokia drynarioides strain JFW-HI SEQ_127316, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60609
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 179 characters in sequence are not A, C, G, or T
Found at i:631 original size:13 final size:13
Alignment explanation
Indices: 613--637 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
603 AGTGAACAGC
613 TTTGAAATATAAT
1 TTTGAAATATAAT
626 TTTGAAATATAA
1 TTTGAAATATAA
638 ATTCGCACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
TTTGAAATATAAT
Found at i:696 original size:22 final size:23
Alignment explanation
Indices: 653--705 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
643 CACTTCGTGT
*
653 GCCTACTGATTTGCGCTATGTGC
1 GCCTACTGATTTGCACTATGTGC
* *
676 GCCTACTGA-TTGCACTGTGTGT
1 GCCTACTGATTTGCACTATGTGC
*
698 GCTTACTG
1 GCCTACTG
706 TTTCCCCAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 17 0.65
23 9 0.35
ACGTcount: A:0.13, C:0.25, G:0.26, T:0.36
Consensus pattern (23 bp):
GCCTACTGATTTGCACTATGTGC
Found at i:2143 original size:28 final size:28
Alignment explanation
Indices: 2118--2171 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
2108 AGACTTTTCG
2118 GATACCCG-GGGTAAAATGGTAATTTTA
1 GATACCCGAGGGTAAAATGGTAATTTTA
* *
2145 GATTCTCGAGGGTAAAATGGTAATTTT
1 GATACCCGAGGGTAAAATGGTAATTTT
2172 GGGAAAGTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.33
Consensus pattern (28 bp):
GATACCCGAGGGTAAAATGGTAATTTTA
Found at i:2204 original size:59 final size:59
Alignment explanation
Indices: 2154--2615 Score: 405
Period size: 59 Copynumber: 7.9 Consensus size: 59
2144 AGATTCTCGA
* * *
2154 GGGTAAAATGGTAATTTTGGGAAAG-TTCGGGGTTAAAAATTGAATTTTTAGACATTCGG
1 GGGTAAAATGGTAATTTT-GGAAAGTTTCGGGGTTAAAAATGGAATTTTTGGACGTTCGG
* * * * * * *
2213 GGGTAAAA-GTGTAATTTT-GAGAGTTTTGAGGTAAAAAATGGAGTTTTTGGACATCCGG
1 GGGTAAAATG-GTAATTTTGGAAAGTTTCGGGGTTAAAAATGGAATTTTTGGACGTTCGG
* * * *
2271 GGGAAAAATGGTAATTTTTGAAAGTTTCGGGGTTAAAAATGGAAATTTTGGAGGTTCGG
1 GGGTAAAATGGTAATTTTGGAAAGTTTCGGGGTTAAAAATGGAATTTTTGGACGTTCGG
* * * *
2330 GGGTAAATAT-GTAATTTTTGG-AAGTTTCAGGGTCAAAAATGGAATTTTTGGAAGTTCGA
1 GGGTAAA-ATGGTAA-TTTTGGAAAGTTTCGGGGTTAAAAATGGAATTTTTGGACGTTCGG
* * * *
2389 GGGTAAAAATGG-AATTTTTGAAAGTCTCGAGGTTAAAAATGGAATTTTTGGAAGTTCGG
1 GGGT-AAAATGGTAATTTTGGAAAGTTTCGGGGTTAAAAATGGAATTTTTGGACGTTCGG
** * * ***
2448 GGGTAAAATGG-AATTTTTGG-AAGTTTTAGGGTT-AAAATGGAATTTTTAGAAGTTTAC
1 GGGTAAAATGGTAA-TTTTGGAAAGTTTCGGGGTTAAAAATGGAATTTTTGGACGTTCGG
*** * *
2505 GGGTAAAAATGG-AATTTTTGG-AAGTTTCGGGAAAAAAAATGGAATTTTTGGAAGTTCAG
1 GGGT-AAAATGGTAA-TTTTGGAAAGTTTCGGGGTTAAAAATGGAATTTTTGGACGTTCGG
*
2564 GGGTAAAAAT-GTAATTTTTGG-AAG-TTCAGGGG-TAAAAATGTAATTTTTGGAC
1 GGGT-AAAATGGTAA-TTTTGGAAAGTTTC-GGGGTTAAAAATGGAATTTTTGGAC
2616 AGTTTAGGGA
Statistics
Matches: 337, Mismatches: 52, Indels: 29
0.81 0.12 0.07
Matches are distributed among these distances:
57 28 0.08
58 111 0.33
59 187 0.55
60 11 0.03
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.34
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTGGAAAGTTTCGGGGTTAAAAATGGAATTTTTGGACGTTCGG
Found at i:2212 original size:29 final size:29
Alignment explanation
Indices: 2158--2619 Score: 399
Period size: 29 Copynumber: 15.7 Consensus size: 29
2148 TCTCGAGGGT
*
2158 AAAATGGTAATTTTGGGAAAGTTCGGGGTTA
1 AAAATGG-AATTTTTGG-AAGTTCGGGGTTA
* * *
2189 AAAATTGAATTTTTAGACA-TTCGGGGGTA
1 AAAATGGAATTTTTGGA-AGTTCGGGGTTA
* * * * *
2218 AAAGTGTAA-TTTT-GAGAGTTTTGAGGTAA
1 AAAATGGAATTTTTGGA-AG-TTCGGGGTTA
* * *
2247 AAAATGGAGTTTTTGGACA-TCCGGGG-GA
1 AAAATGGAATTTTTGGA-AGTTCGGGGTTA
*
2275 AAAATGGTAATTTTTGAAAGTTTCGGGGTTA
1 AAAATGG-AATTTTTGGAAG-TTCGGGGTTA
* * *
2306 AAAATGGAAATTTTGGAGGTTCGGGGGTA
1 AAAATGGAATTTTTGGAAGTTCGGGGTTA
* * * *
2335 AATATGTAATTTTTGGAAGTTTCAGGGTCA
1 AAAATGGAATTTTTGGAAG-TTCGGGGTTA
2365 AAAATGGAATTTTTGGAAGTTCGAGGG-TA
1 AAAATGGAATTTTTGGAAGTTCG-GGGTTA
* *
2394 AAAATGGAATTTTTGAAAGTCTCGAGGTTA
1 AAAATGGAATTTTTGGAAGT-TCGGGGTTA
*
2424 AAAATGGAATTTTTGGAAGTTCGGGGGT-
1 AAAATGGAATTTTTGGAAGTTCGGGGTTA
**
2452 AAAATGGAATTTTTGGAAGTTTTAGGGTT-
1 AAAATGGAATTTTTGGAAG-TTCGGGGTTA
*
2481 AAAATGGAATTTTTAGAAGTTTAC-GGG-TA
1 AAAATGGAATTTTTGGAAG-TT-CGGGGTTA
***
2510 AAAATGGAATTTTTGGAAGTTTCGGGAAAA
1 AAAATGGAATTTTTGGAAG-TTCGGGGTTA
2540 AAAATGGAATTTTTGGAAGTTCAGGGG-TA
1 AAAATGGAATTTTTGGAAGTTC-GGGGTTA
*
2569 AAAATGTAATTTTTGGAAGTTCAGGGG-TA
1 AAAATGGAATTTTTGGAAGTTC-GGGGTTA
*
2598 AAAATGTAATTTTTGGACAGTT
1 AAAATGGAATTTTTGGA-AGTT
2620 TAGGGACCTT
Statistics
Matches: 356, Mismatches: 55, Indels: 41
0.79 0.12 0.09
Matches are distributed among these distances:
27 3 0.01
28 34 0.10
29 197 0.55
30 105 0.29
31 17 0.05
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.34
Consensus pattern (29 bp):
AAAATGGAATTTTTGGAAGTTCGGGGTTA
Found at i:3778 original size:24 final size:24
Alignment explanation
Indices: 3751--3798 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
3741 TTATTTAATA
*
3751 ATTATTATCTTTAATAAAATTATT
1 ATTATTATCATTAATAAAATTATT
*
3775 ATTATTATCATTAATGAAATTATT
1 ATTATTATCATTAATAAAATTATT
3799 TAATATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (24 bp):
ATTATTATCATTAATAAAATTATT
Found at i:4506 original size:19 final size:18
Alignment explanation
Indices: 4482--4525 Score: 79
Period size: 19 Copynumber: 2.4 Consensus size: 18
4472 GAATTTTAAT
4482 TAAATTTAAATTTAAAAGA
1 TAAATTTAAATTTAAAA-A
4501 TAAATTTAAATTTAAAAA
1 TAAATTTAAATTTAAAAA
4519 TAAATTT
1 TAAATTT
4526 GAATCAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (18 bp):
TAAATTTAAATTTAAAAA
Found at i:5051 original size:19 final size:19
Alignment explanation
Indices: 5012--5053 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
5002 TAAATCATAA
**
5012 TTTATGTATAATTTTAAAT
1 TTTATGTATAAAATTAAAT
*
5031 TTTATGTATAAAATTACAT
1 TTTATGTATAAAATTAAAT
5050 TTTA
1 TTTA
5054 AATTTTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (19 bp):
TTTATGTATAAAATTAAAT
Found at i:12832 original size:29 final size:29
Alignment explanation
Indices: 12790--12849 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
12780 CACTAATAAA
12790 ATTATCATTTATTTTATAAAAATGAATTC
1 ATTATCATTTATTTTATAAAAATGAATTC
12819 ATTATCATTTATTTTATAAAAATGAATTC
1 ATTATCATTTATTTTATAAAAATGAATTC
12848 AT
1 AT
12850 CATTTAATTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.42, C:0.07, G:0.03, T:0.48
Consensus pattern (29 bp):
ATTATCATTTATTTTATAAAAATGAATTC
Found at i:15732 original size:23 final size:23
Alignment explanation
Indices: 15704--15764 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
15694 GATCCTTTAA
15704 AAATTATAAAAATATAAATTATT
1 AAATTATAAAAATATAAATTATT
* *
15727 AAATTA-ATAAAAT-TATATTTTT
1 AAATTATA-AAAATATAAATTATT
15749 AATATTAT-AAAATATA
1 AA-ATTATAAAAATATA
15765 CAATATCTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
22 15 0.47
23 17 0.53
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
AAATTATAAAAATATAAATTATT
Found at i:15758 original size:22 final size:22
Alignment explanation
Indices: 15704--15764 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
15694 GATCCTTTAA
15704 AAATTATAAAAATATAAATTATT
1 AAATTAT-AAAATATAAATTATT
* *
15727 AAATTAATAAAAT-TATATTTTT
1 AAATT-ATAAAATATAAATTATT
15749 AATATTATAAAATATA
1 AA-ATTATAAAATATA
15765 CAATATCTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 16 0.48
23 15 0.45
24 2 0.06
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AAATTATAAAATATAAATTATT
Found at i:21001 original size:21 final size:21
Alignment explanation
Indices: 20953--21001 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
20943 TTTAACCTTC
* *
20953 AGACAAATCAAATATTAAAAA
1 AGACAATTCAAAGATTAAAAA
**
20974 ACCCAATTCAAAGATTAAAAA
1 AGACAATTCAAAGATTAAAAA
20995 AGACAAT
1 AGACAAT
21002 AGTAAAAAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.61, C:0.14, G:0.06, T:0.18
Consensus pattern (21 bp):
AGACAATTCAAAGATTAAAAA
Found at i:21133 original size:5 final size:5
Alignment explanation
Indices: 21120--21158 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
21110 GTTAACACGT
* * *
21120 TCCTA TCCTC TCCTC TCCTC TCCTC TCTTC TCTTC TCCT
1 TCCTC TCCTC TCCTC TCCTC TCCTC TCCTC TCCTC TCCT
21159 TTATTTTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.03, C:0.51, G:0.00, T:0.46
Consensus pattern (5 bp):
TCCTC
Found at i:22060 original size:2 final size:2
Alignment explanation
Indices: 22041--22082 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
22031 ATAGAGCTAC
* *
22041 AT AT AC AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22083 TCTTAATTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:32001 original size:2 final size:2
Alignment explanation
Indices: 31986--32025 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
31976 ACACACACAC
* *
31986 AT AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32026 TGCATGTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:33726 original size:31 final size:32
Alignment explanation
Indices: 33665--33726 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 32
33655 TTTTAAAATT
* *
33665 AAAAAATTCAAAAAACAATTATAATTTTTTTA
1 AAAAAATTCAAAAAACAATTAAAATATTTTTA
*
33697 AAAAAATT-AAAAATC-ATTAAAAATATTTTT
1 AAAAAATTCAAAAAACAATT-AAAATATTTTT
33727 TTTCAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 3 0.12
31 15 0.58
32 8 0.31
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (32 bp):
AAAAAATTCAAAAAACAATTAAAATATTTTTA
Found at i:45173 original size:2 final size:2
Alignment explanation
Indices: 45166--45218 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
45156 TTGATTTAAG
45166 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45208 AT AT AT AT AT A
1 AT AT AT AT AT A
45219 GTTAATCACA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:52171 original size:19 final size:20
Alignment explanation
Indices: 52133--52173 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
52123 TCATTGAAAC
*
52133 TGATTAGAGAAATAAGTTTG
1 TGATTAGAGAAATAAATTTG
*
52153 TGATTAG-GACATAAATTTG
1 TGATTAGAGAAATAAATTTG
52172 TG
1 TG
52174 GTTTGCCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.37
Consensus pattern (20 bp):
TGATTAGAGAAATAAATTTG
Found at i:52715 original size:18 final size:19
Alignment explanation
Indices: 52692--52732 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
52682 CAATTTGATA
* *
52692 TTAAATTTTGTTTTAA-AT
1 TTAAATTCTATTTTAATAT
52710 TTAAATTCTATTTTAATAT
1 TTAAATTCTATTTTAATAT
52729 TTAA
1 TTAA
52733 TTTGGTGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (19 bp):
TTAAATTCTATTTTAATAT
Found at i:55639 original size:23 final size:23
Alignment explanation
Indices: 55593--55730 Score: 102
Period size: 25 Copynumber: 5.9 Consensus size: 23
55583 TACTGATCAA
* *
55593 CACTGTGTGTG-CTTCTGTTCAG
1 CACTGTGTGTGCCCTCTGTTTAG
*
55615 CACTGTGTGTGCTCTCTGTTTAG
1 CACTGTGTGTGCCCTCTGTTTAG
* * *
55638 CAC-GTTTCGTGCCCTCTGATCAG
1 CACTGTGT-GTGCCCTCTGTTTAG
*
55661 CACTTTGTGTGCCCTCTGTTATTAG
1 CACTGTGTGTGCCCTCTG-T-TTAG
*
55686 CACT-TCGTGTGACCTCTGTTATTAG
1 CACTGT-GTGTGCCCTCTG-T-TTAG
* * *
55711 CACTTTTTGTGCCTTCTGTT
1 CACTGTGTGTGCCCTCTGTT
55731 AACCAACACT
Statistics
Matches: 94, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
22 14 0.15
23 37 0.39
24 4 0.04
25 38 0.40
26 1 0.01
ACGTcount: A:0.11, C:0.25, G:0.22, T:0.42
Consensus pattern (23 bp):
CACTGTGTGTGCCCTCTGTTTAG
Found at i:55693 original size:46 final size:48
Alignment explanation
Indices: 55606--55731 Score: 125
Period size: 46 Copynumber: 2.6 Consensus size: 48
55596 TGTGTGTGCT
* * * *
55606 TCTGTTCAGCACTGTGTGTGCTCTCTG-T-TTAGCACGTTTC-GTGCCC
1 TCTGATCAGCACTTTGTGTGCCCTCTGTTATTAGCACG-TTCGGTGACC
55652 TCTGATCAGCACTTTGTGTGCCCTCTGTTATTAGCAC-TTCGTGTGACC
1 TCTGATCAGCACTTTGTGTGCCCTCTGTTATTAGCACGTTCG-GTGACC
* * *
55700 TCTGTTATTAGCACTTTTTGTGCCTTCTGTTA
1 TCTG--ATCAGCACTTTGTGTGCCCTCTGTTA
55732 ACCAACACTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
46 27 0.40
47 1 0.01
48 16 0.24
50 23 0.34
ACGTcount: A:0.12, C:0.25, G:0.21, T:0.42
Consensus pattern (48 bp):
TCTGATCAGCACTTTGTGTGCCCTCTGTTATTAGCACGTTCGGTGACC
Found at i:55695 original size:25 final size:25
Alignment explanation
Indices: 55613--55731 Score: 122
Period size: 25 Copynumber: 4.9 Consensus size: 25
55603 GCTTCTGTTC
* *
55613 AGCACTGTGTGTGCTCTCTG-T-TT
1 AGCACTTTGTGTGCCCTCTGTTATT
* *
55636 AGCACGTTT-CGTGCCCTCTG--ATC
1 AGCAC-TTTGTGTGCCCTCTGTTATT
55659 AGCACTTTGTGTGCCCTCTGTTATT
1 AGCACTTTGTGTGCCCTCTGTTATT
* *
55684 AGCACTTCGTGTGACCTCTGTTATT
1 AGCACTTTGTGTGCCCTCTGTTATT
* *
55709 AGCACTTTTTGTGCCTTCTGTTA
1 AGCACTTTGTGTGCCCTCTGTTA
55732 ACCAACACTT
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
22 3 0.04
23 30 0.38
24 2 0.03
25 44 0.56
ACGTcount: A:0.13, C:0.25, G:0.21, T:0.41
Consensus pattern (25 bp):
AGCACTTTGTGTGCCCTCTGTTATT
Found at i:55752 original size:50 final size:50
Alignment explanation
Indices: 55646--55756 Score: 120
Period size: 50 Copynumber: 2.3 Consensus size: 50
55636 AGCACGTTTC
** * *
55646 GTGCCCTCTG--ATCAGCACTTTGTGTGCCCTCTGTTATTAGCACTTCGT
1 GTGCCCTCTGTTATCAGCACTTTGTGTGCCCTCTGTTACCAACACTTCAT
* * * *
55694 GTGACCTCTGTTATTAGCACTTTTTGTGCCTTCTGTTAACCAACACTT-AT
1 GTGCCCTCTGTTATCAGCACTTTGTGTGCCCTCTGTT-ACCAACACTTCAT
55744 GTGCCCTCTGTTA
1 GTGCCCTCTGTTA
55757 CTTTCTGCTT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
48 9 0.18
50 35 0.69
51 7 0.14
ACGTcount: A:0.15, C:0.27, G:0.18, T:0.40
Consensus pattern (50 bp):
GTGCCCTCTGTTATCAGCACTTTGTGTGCCCTCTGTTACCAACACTTCAT
Done.