Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012320.1 Kokia drynarioides strain JFW-HI SEQ_127322, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 275235
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 3 characters in sequence are not A, C, G, or T
Found at i:792 original size:33 final size:33
Alignment explanation
Indices: 755--865 Score: 118
Period size: 33 Copynumber: 3.4 Consensus size: 33
745 TCTACATAAG
*
755 TGATTGGAACATCTATCAAGGCCGCTTCATCAA
1 TGATTGGAACATCTATCAAGGCAGCTTCATCAA
*
788 TGATTGGAACATCTAT-AAGTGCAACTTCAT-AA
1 TGATTGGAACATCTATCAAG-GCAGCTTCATCAA
* * * * *
820 TTGATTCGAACATCTCTCGAGGCAGTTTCATCAT
1 -TGATTGGAACATCTATCAAGGCAGCTTCATCAA
*
854 TCATTGGAACAT
1 TGATTGGAACAT
866 TTCTCGAGGC
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
32 5 0.08
33 56 0.88
34 3 0.05
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.32
Consensus pattern (33 bp):
TGATTGGAACATCTATCAAGGCAGCTTCATCAA
Found at i:871 original size:33 final size:33
Alignment explanation
Indices: 813--876 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
803 TAAGTGCAAC
*
813 TTCATAATTGATTCGAACATCTCTCGAGGCAGT
1 TTCATAATTCATTCGAACATCTCTCGAGGCAGT
* * *
846 TTCATCATTCATTGGAACATTTCTCGAGGCA
1 TTCATAATTCATTCGAACATCTCTCGAGGCA
877 ACTATATCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (33 bp):
TTCATAATTCATTCGAACATCTCTCGAGGCAGT
Found at i:3141 original size:33 final size:33
Alignment explanation
Indices: 3106--3237 Score: 120
Period size: 33 Copynumber: 4.0 Consensus size: 33
3096 TACATAAGTG
* *
3106 ATTGGAACATCTATCAGCGTAGCTTCATCAATG
1 ATTGGAACATCTATCAGCGTAGCTTCATCATTC
*** *
3139 ATTGGAACATCTATCAGTACAACTTCATCATTC
1 ATTGGAACATCTATCAGCGTAGCTTCATCATTC
* * * * *
3172 ATTCGAACATCTCTCGGGGTAGTTTCATCATTC
1 ATTGGAACATCTATCAGCGTAGCTTCATCATTC
* * * * *
3205 ATTGGAACATTTCTCAGGGCAGCTTGATCATTC
1 ATTGGAACATCTATCAGCGTAGCTTCATCATTC
3238 TGTTCGACTC
Statistics
Matches: 79, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 79 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (33 bp):
ATTGGAACATCTATCAGCGTAGCTTCATCATTC
Found at i:3235 original size:66 final size:66
Alignment explanation
Indices: 3110--3237 Score: 148
Period size: 66 Copynumber: 1.9 Consensus size: 66
3100 TAAGTGATTG
* *
3110 GAACATCTATCAGCGTAGCTTCATCAATGATTGGAACATCTATCAGTACAACTTCATCATTCATT
1 GAACATCTATCAGCGTAGCTTCATCAATCATTGGAACATCTATCAGGACAACTTCATCATTCATT
3175 C
66 C
* * * * * * * * * *
3176 GAACATCTCTCGGGGTAGTTTCATCATTCATTGGAACATTTCTCAGGGCAGCTTGATCATTC
1 GAACATCTATCAGCGTAGCTTCATCAATCATTGGAACATCTATCAGGACAACTTCATCATTC
3238 TGTTCGACTC
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
66 50 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33
Consensus pattern (66 bp):
GAACATCTATCAGCGTAGCTTCATCAATCATTGGAACATCTATCAGGACAACTTCATCATTCATT
C
Found at i:11766 original size:12 final size:11
Alignment explanation
Indices: 11734--11768 Score: 52
Period size: 12 Copynumber: 3.0 Consensus size: 11
11724 AATAAATAGA
11734 AAAATAAAAAT
1 AAAATAAAAAT
11745 AAAATAAAAAAT
1 AAAAT-AAAAAT
11757 AAAACTAAAAAT
1 AAAA-TAAAAAT
11769 TGGGTTACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.23
12 16 0.73
13 1 0.05
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:11766 original size:18 final size:19
Alignment explanation
Indices: 11708--11766 Score: 68
Period size: 18 Copynumber: 3.1 Consensus size: 19
11698 CTAGACATAT
*
11708 AATAAAAAAATAAGTAAAT-A
1 AATAGAAAAATAA--AAATAA
11728 AATAGAAAAATAAAAATAA
1 AATAGAAAAATAAAAATAA
*
11747 AATA-AAAAATAAAACTAA
1 AATAGAAAAATAAAAATAA
11765 AA
1 AA
11767 ATTGGGTTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
18 19 0.53
19 5 0.14
20 12 0.33
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (19 bp):
AATAGAAAAATAAAAATAA
Found at i:17334 original size:24 final size:24
Alignment explanation
Indices: 17306--17368 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
17296 AGAAATAATC
17306 TTTCAGTTAAACTCTGTTTATTTG
1 TTTCAGTTAAACTCTGTTTATTTG
* *
17330 TTTCAATTAAACTTTGTTTATTTG
1 TTTCAGTTAAACTCTGTTTATTTG
* *
17354 TTTGAGTCAAACTCT
1 TTTCAGTTAAACTCT
17369 TATTAGTCTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.24, C:0.13, G:0.11, T:0.52
Consensus pattern (24 bp):
TTTCAGTTAAACTCTGTTTATTTG
Found at i:19376 original size:24 final size:24
Alignment explanation
Indices: 19290--19364 Score: 141
Period size: 24 Copynumber: 3.1 Consensus size: 24
19280 AGAAATAATC
*
19290 TTTCAATTAAACTCTGTTTAATTG
1 TTTCAATTAAACTCTGTTTATTTG
19314 TTTCAATTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
19338 TTTCAATTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
19362 TTT
1 TTT
19365 AAGTCAAACT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.55
Consensus pattern (24 bp):
TTTCAATTAAACTCTGTTTATTTG
Found at i:19969 original size:33 final size:33
Alignment explanation
Indices: 19902--19987 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 33
19892 AAATTCTCTA
* * **
19902 CATAAGTGATTGGAACATCTATCAGCGCTGCTT
1 CATAATTGATTGGAACATCTATCAGCACAACTT
*
19935 CATCAA-TGATTGGAACATCTATCAGTACAACTT
1 CAT-AATTGATTGGAACATCTATCAGCACAACTT
*
19968 CATAATTGATTCGAACATCT
1 CATAATTGATTGGAACATCT
19988 CTCGAGGTAG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
32 2 0.04
33 42 0.91
34 2 0.04
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (33 bp):
CATAATTGATTGGAACATCTATCAGCACAACTT
Found at i:21173 original size:16 final size:17
Alignment explanation
Indices: 21152--21183 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
21142 TTATTTGGAA
21152 ATCTTACCT-TTTTATC
1 ATCTTACCTATTTTATC
21168 ATCTTACCTATTTTAT
1 ATCTTACCTATTTTAT
21184 TATCCTAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (17 bp):
ATCTTACCTATTTTATC
Found at i:34480 original size:40 final size:40
Alignment explanation
Indices: 34436--34554 Score: 134
Period size: 40 Copynumber: 2.9 Consensus size: 40
34426 TAGAGTATAT
*
34436 ATTTAAAATAGGAAAGAATCAGAAAATTTACCTAAAATAC
1 ATTTAAAATAGGAAAGAATCAGAAAATTTAACTAAAATAC
* * * *
34476 ATTTAAAATCGGAATA-AATAAAAAAATTTAACTAAAATATAT
1 ATTTAAAATAGGAA-AGAATCAGAAAATTTAACT-AAA-ATAC
*
34518 ATTTAAAATA-GAAATGAATCAGAAAATTTATCTAAAA
1 ATTTAAAATAGGAAA-GAATCAGAAAATTTAACTAAAA
34555 AATCCTTAAG
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
40 29 0.45
41 10 0.15
42 26 0.40
ACGTcount: A:0.57, C:0.07, G:0.08, T:0.29
Consensus pattern (40 bp):
ATTTAAAATAGGAAAGAATCAGAAAATTTAACTAAAATAC
Found at i:34544 original size:42 final size:42
Alignment explanation
Indices: 34431--34554 Score: 146
Period size: 42 Copynumber: 3.0 Consensus size: 42
34421 AAAAATAGAG
*
34431 TATATATTTAAAATAGGAAA-GAATCAGAAAATTTACCT-AAA
1 TATATATTTAAAATA-GAAATGAATCAGAAAATTTAACTAAAA
* * * * * *
34472 -ATACATTTAAAATCGGAATAAATAAAAAAATTTAACTAAAA
1 TATATATTTAAAATAGAAATGAATCAGAAAATTTAACTAAAA
*
34513 TATATATTTAAAATAGAAATGAATCAGAAAATTTATCTAAAA
1 TATATATTTAAAATAGAAATGAATCAGAAAATTTAACTAAAA
34555 AATCCTTAAG
Statistics
Matches: 66, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
39 3 0.05
40 26 0.39
41 3 0.05
42 34 0.52
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.30
Consensus pattern (42 bp):
TATATATTTAAAATAGAAATGAATCAGAAAATTTAACTAAAA
Found at i:35024 original size:21 final size:23
Alignment explanation
Indices: 34977--35025 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
34967 ACTCATTCGC
* *
34977 TAAAAATAAATAATTTAGTCAAA
1 TAAAAATAAACAATTTAGTAAAA
35000 -AAAAAT-AACAATTTA-TAAAA
1 TAAAAATAAACAATTTAGTAAAA
35020 TAAAAA
1 TAAAAA
35026 AAATAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 4 0.17
21 13 0.57
22 6 0.26
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (23 bp):
TAAAAATAAACAATTTAGTAAAA
Found at i:35058 original size:17 final size:17
Alignment explanation
Indices: 35016--35059 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
35006 AACAATTTAT
*
35016 AAAATAAAAAAAATAAA
1 AAAATAACAAAAATAAA
35033 AACAA-AACAAAAATAAA
1 AA-AATAACAAAAATAAA
35050 AAAATAACAA
1 AAAATAACAA
35060 TTTTTGACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 2 0.08
17 20 0.83
18 2 0.08
ACGTcount: A:0.84, C:0.07, G:0.00, T:0.09
Consensus pattern (17 bp):
AAAATAACAAAAATAAA
Found at i:43691 original size:44 final size:44
Alignment explanation
Indices: 43623--43713 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
43613 AGCATCCAAC
43623 AACACTCTATCGACTGAATTCTGACCCAAAACCTTGGGAAGCTG
1 AACACTCTATCGACTGAATTCTGACCCAAAACCTTGGGAAGCTG
*
43667 AACATTCTATCGACTGAATTCTGACCCAAAACCTTGGGAAGCTG
1 AACACTCTATCGACTGAATTCTGACCCAAAACCTTGGGAAGCTG
43711 AAC
1 AAC
43714 GTTAAGATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (44 bp):
AACACTCTATCGACTGAATTCTGACCCAAAACCTTGGGAAGCTG
Found at i:45670 original size:241 final size:241
Alignment explanation
Indices: 45247--45706 Score: 857
Period size: 241 Copynumber: 1.9 Consensus size: 241
45237 CCAAAATGTA
45247 ATTAATAAGATTAGTGTCTGCCCCCCAACCACAAACTTGAGCTTTACTAATTTGTATTTTTCAGC
1 ATTAATAAGATTAGTGTCTGCCCCCCAACCACAAACTTGAGCTTTACTAATTTGTATTTTTCAGC
* *
45312 TTAATCAAATGGATAAAGAAAAAGTGATTGCTAGCACAAAGTTGCAATGTAGACACTGCGAAATA
66 TTAACCAAATGGATAAAGAAAAAGTGACTGCTAGCACAAAGTTGCAATGTAGACACTGCGAAATA
45377 CAACTATGAACCCCCAATATTCAATTTCTAGAATATGGTTCACGTGGAGATTTTCTTCAATCATA
131 CAACTATGAACCCCCAATATTCAATTTCTAGAATATGGTTCACGTGGAGATTTTCTTCAATCATA
45442 AATATCTGTAGTAAAATAAATAAATAAATAAACAAAAAGGCAATGC
196 AATATCTGTAGTAAAATAAATAAATAAATAAACAAAAAGGCAATGC
45488 ATTAATAAGATTAGTGTCTGCCCCCCAACCACAAACTTGAGCTTTACTAATTTGTATTTTTCAGC
1 ATTAATAAGATTAGTGTCTGCCCCCCAACCACAAACTTGAGCTTTACTAATTTGTATTTTTCAGC
* **
45553 TTAACCAAATGGATAAAGAAAGAGTGACTGCTAGCACAAAGTTGCAATGTAGATGCTGCGAAATA
66 TTAACCAAATGGATAAAGAAAAAGTGACTGCTAGCACAAAGTTGCAATGTAGACACTGCGAAATA
* *
45618 TAACTATTAACCCCCAATATTCAATTTCTAGAATATGGTTCACGTGGAGATTTTCTTCAATCATA
131 CAACTATGAACCCCCAATATTCAATTTCTAGAATATGGTTCACGTGGAGATTTTCTTCAATCATA
45683 AATATCTGTAGTAAAATAAATAAA
196 AATATCTGTAGTAAAATAAATAAA
45707 CAAAAAGGCA
Statistics
Matches: 212, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
241 212 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.30
Consensus pattern (241 bp):
ATTAATAAGATTAGTGTCTGCCCCCCAACCACAAACTTGAGCTTTACTAATTTGTATTTTTCAGC
TTAACCAAATGGATAAAGAAAAAGTGACTGCTAGCACAAAGTTGCAATGTAGACACTGCGAAATA
CAACTATGAACCCCCAATATTCAATTTCTAGAATATGGTTCACGTGGAGATTTTCTTCAATCATA
AATATCTGTAGTAAAATAAATAAATAAATAAACAAAAAGGCAATGC
Found at i:48952 original size:7 final size:7
Alignment explanation
Indices: 48940--48970 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
48930 ATATTTATAC
48940 AAATTTT
1 AAATTTT
48947 AAATTTT
1 AAATTTT
48954 AAATTTT
1 AAATTTT
*
48961 ATATTTT
1 AAATTTT
48968 AAA
1 AAA
48971 AAATAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
AAATTTT
Found at i:49851 original size:10 final size:10
Alignment explanation
Indices: 49806--49858 Score: 56
Period size: 10 Copynumber: 5.3 Consensus size: 10
49796 CTTAAAGATT
49806 TAATTAATCA
1 TAATTAATCA
*
49816 -ATATTAATTA
1 TA-ATTAATCA
49826 TAATTAATCA
1 TAATTAATCA
*
49836 -ATATTAATTA
1 TA-ATTAATCA
49846 TAATTAATCA
1 TAATTAATCA
49856 TAA
1 TAA
49859 GTTATTAAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (10 bp):
TAATTAATCA
Found at i:49865 original size:20 final size:20
Alignment explanation
Indices: 49806--49855 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
49796 CTTAAAGATT
49806 TAATTAATCAATATTAATTA
1 TAATTAATCAATATTAATTA
49826 TAATTAATCAATATTAATTA
1 TAATTAATCAATATTAATTA
49846 TAATTAATCA
1 TAATTAATCA
49856 TAAGTTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (20 bp):
TAATTAATCAATATTAATTA
Found at i:55387 original size:26 final size:26
Alignment explanation
Indices: 55344--55403 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
55334 GGTAAAAAAA
* *
55344 AAATTGGTTTCTTATATATT-TTTAT
1 AAATTTGTTACTTATATATTCTTTAT
*
55369 AAATTTGTTACTTCATATATTCTTTTT
1 AAATTTGTTACTT-ATATATTCTTTAT
55396 AATATTTG
1 AA-ATTTG
55404 CATCAAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 11 0.38
26 7 0.24
27 6 0.21
28 5 0.17
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.58
Consensus pattern (26 bp):
AAATTTGTTACTTATATATTCTTTAT
Found at i:58053 original size:15 final size:15
Alignment explanation
Indices: 58033--58067 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
58023 TCATTGTTGC
58033 TCTTTGAACTGCCTT
1 TCTTTGAACTGCCTT
* *
58048 TCTTTGAATTGCTTT
1 TCTTTGAACTGCCTT
58063 TCTTT
1 TCTTT
58068 TTTTTAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.11, C:0.20, G:0.11, T:0.57
Consensus pattern (15 bp):
TCTTTGAACTGCCTT
Found at i:65785 original size:21 final size:20
Alignment explanation
Indices: 65752--65790 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
65742 AGATCTGCTC
*
65752 AAATTATTTTTATTTTAAAA
1 AAATTATATTTATTTTAAAA
65772 AAATATATATTTATTTTAA
1 AAAT-TATATTTATTTTAA
65791 TATTTAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
AAATTATATTTATTTTAAAA
Found at i:75697 original size:24 final size:24
Alignment explanation
Indices: 75657--75737 Score: 117
Period size: 24 Copynumber: 3.4 Consensus size: 24
75647 ATCTAGACTA
* *
75657 AGAGTTTGACTGAAACAAATAAAC
1 AGAGTTTAATTGAAACAAATAAAC
* *
75681 AGAGTTTAATTGTAACAGATAAAC
1 AGAGTTTAATTGAAACAAATAAAC
*
75705 AGAGTTTAATTGAAACAAATAAAT
1 AGAGTTTAATTGAAACAAATAAAC
75729 AGAGTTTAA
1 AGAGTTTAA
75738 CTGGAAGATT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.27
Consensus pattern (24 bp):
AGAGTTTAATTGAAACAAATAAAC
Found at i:82833 original size:9 final size:8
Alignment explanation
Indices: 82805--82876 Score: 65
Period size: 8 Copynumber: 8.6 Consensus size: 8
82795 AAATTTTACC
*
82805 AAAAAAAT
1 AAAAAAAG
82813 AAAAAATA-
1 AAAAAA-AG
82821 AAAAAAGAG
1 AAAAAA-AG
*
82830 AAAAAGAG
1 AAAAAAAG
*
82838 AAAAAGAGG
1 AAAAA-AAG
82847 AAAAAAAGG
1 AAAAAAA-G
82856 AAAAAAAG
1 AAAAAAAG
*
82864 AAGAAAAG
1 AAAAAAAG
82872 AAAAA
1 AAAAA
82877 GGGAAGGTCG
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
8 33 0.62
9 20 0.38
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:83918 original size:49 final size:49
Alignment explanation
Indices: 83763--83973 Score: 133
Period size: 49 Copynumber: 4.3 Consensus size: 49
83753 TCTACAGGTT
* * * * ** * * *
83763 TGAAGGGAAAGATTGAAGCCGCAACAACAAATCTAATACCCTAAAAATA
1 TGAAGGGAAAGATTGAAGCCACAACAGCGAACCTTGTATCCTAGAGATA
** * ** * *
83812 TGAATAGAAAGGTTGAAGCCGTAAC-GACGAACCTTGTA-CCTCAGGGATG
1 TGAAGGGAAAGATTGAAGCCACAACAG-CGAACCTTGTATCCT-AGAGATA
* * ** * * *
83861 TGATGGGAAAGATTGAAGCTACAATTGTGAATCTTGTA-CCTTAGAGTTA
1 TGAAGGGAAAGATTGAAGCCACAACAGCGAACCTTGTATCC-TAGAGATA
* *
83910 TGGAGGGAAATG-TTGAAGCCGCAACAGCGAACCTTGTATCCTAGAGATA
1 TGAAGGGAAA-GATTGAAGCCACAACAGCGAACCTTGTATCCTAGAGATA
83959 TGAAGGGAAAGATTG
1 TGAAGGGAAAGATTG
83974 GGGTCGCAAT
Statistics
Matches: 119, Mismatches: 36, Indels: 14
0.70 0.21 0.08
Matches are distributed among these distances:
48 4 0.03
49 110 0.92
50 5 0.04
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (49 bp):
TGAAGGGAAAGATTGAAGCCACAACAGCGAACCTTGTATCCTAGAGATA
Found at i:84305 original size:20 final size:20
Alignment explanation
Indices: 84277--84314 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
84267 GGGCAGATTG
84277 AAGACCAT-CAGATCTTTTTT
1 AAGACCATCCA-ATCTTTTTT
*
84297 AAGATCATCCAATCTTTT
1 AAGACCATCCAATCTTTT
84315 ACCCTAGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (20 bp):
AAGACCATCCAATCTTTTTT
Found at i:84449 original size:68 final size:69
Alignment explanation
Indices: 84314--84449 Score: 168
Period size: 68 Copynumber: 2.0 Consensus size: 69
84304 TCCAATCTTT
* * * * * * *
84314 TACCCTAGCTAGATGGCAGATTGAAGACCATCTAATCTGTTACCCTGACCATGGGGTAGATTAAA
1 TACCCTAACTAGAGGGCAAATTGAAGACCATCCAATCTCTTACCCTGACCATCGGGCAGATTAAA
84379 GCAG
66 GCAG
* *
84383 TACCCTAACTAGAGGGCAAATTGAAG-TCATCCAATCTCTTATCCC-GACCATCGGGCAGATTGA
1 TACCCTAACTAGAGGGCAAATTGAAGACCATCCAATCTCTTA-CCCTGACCATCGGGCAGATTAA
84446 AGCA
65 AGCA
84450 ATTCAATTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
68 31 0.54
69 26 0.46
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (69 bp):
TACCCTAACTAGAGGGCAAATTGAAGACCATCCAATCTCTTACCCTGACCATCGGGCAGATTAAA
GCAG
Found at i:84482 original size:39 final size:38
Alignment explanation
Indices: 84383--84565 Score: 145
Period size: 39 Copynumber: 4.7 Consensus size: 38
84373 ATTAAAGCAG
* * *
84383 TACCCTAA-CTAGAGGGCAAATTGAAGTCATCCAATCTCT
1 TACCCTAATC-AGAGGGCAGATTGAAG-CATTCAATCTTT
* * ** *
84422 TATCCC-GACCATCGGGCAGATTGAAGCAATTCAATTTTT
1 TA-CCCTAATCAGAGGGCAGATTGAAGC-ATTCAATCTTT
* * * *
84461 TACCCTAACCAGAGGGTAGATTGAAATCATCCAATCTTT
1 TACCCTAATCAGAGGGCAGATTG-AAGCATTCAATCTTT
* *
84500 TACCTTAATCAGAGGACAGATTGAAGACCATTCAATCTTT
1 TACCCTAATCAGAGGGCAGATTGAAG--CATTCAATCTTT
* *
84540 TACCCTAATCAAATGGCAGATTGAAG
1 TACCCTAATCAGAGGGCAGATTGAAG
84566 ACCATCAAAT
Statistics
Matches: 113, Mismatches: 24, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
38 6 0.05
39 67 0.59
40 40 0.35
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.28
Consensus pattern (38 bp):
TACCCTAATCAGAGGGCAGATTGAAGCATTCAATCTTT
Found at i:84549 original size:40 final size:39
Alignment explanation
Indices: 84436--84580 Score: 161
Period size: 40 Copynumber: 3.7 Consensus size: 39
84426 CCGACCATCG
* * *
84436 GGCAGATTGAAG-CAATTCAATTTTTTACCCTAACCAGA
1 GGCAGATTGAAGACCATTCAATCTTTTACCCTAATCAGA
* * * *
84474 GGGTAGATTGAA-ATCATCCAATCTTTTACCTTAATCAGA
1 -GGCAGATTGAAGACCATTCAATCTTTTACCCTAATCAGA
*
84513 GGACAGATTGAAGACCATTCAATCTTTTACCCTAATCAAA
1 GG-CAGATTGAAGACCATTCAATCTTTTACCCTAATCAGA
84553 TGGCAGATTGAAGACCA-TCAAATCTTTT
1 -GGCAGATTGAAGACCATTC-AATCTTTT
84581 TGAAGACCAT
Statistics
Matches: 89, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 40 0.45
40 45 0.51
41 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.30
Consensus pattern (39 bp):
GGCAGATTGAAGACCATTCAATCTTTTACCCTAATCAGA
Found at i:84585 original size:20 final size:20
Alignment explanation
Indices: 84560--84600 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
84550 AAATGGCAGA
84560 TTGAAGACCA-TCAAATCTTT
1 TTGAAGACCATTC-AATCTTT
84580 TTGAAGACCATTCAATCTTT
1 TTGAAGACCATTCAATCTTT
84600 T
1 T
84601 ACCCTAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 18 0.90
21 2 0.10
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.39
Consensus pattern (20 bp):
TTGAAGACCATTCAATCTTT
Found at i:84593 original size:60 final size:60
Alignment explanation
Indices: 84520--84637 Score: 209
Period size: 60 Copynumber: 2.0 Consensus size: 60
84510 AGAGGACAGA
*
84520 TTGAAGACCATTCAATCTTTTACCCTAATCAAATGGCAGATTGAAGACCATCAAATCTTT
1 TTGAAGACCATTCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACCATCAAATCTTT
* *
84580 TTGAAGACCATTCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACCATCCAATCT
1 TTGAAGACCATTCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACCATCAAATCT
84638 CTTACCCCGA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.30
Consensus pattern (60 bp):
TTGAAGACCATTCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACCATCAAATCTTT
Found at i:84636 original size:40 final size:40
Alignment explanation
Indices: 84580--85290 Score: 366
Period size: 40 Copynumber: 18.3 Consensus size: 40
84570 TCAAATCTTT
* *
84580 TTGAAGACCATTCAATCTTTTACCCTAATCAGAGGGCAGA
1 TTGAAGACCATCCAATCTTTTACCCTAACCAGAGGGCAGA
* **
84620 TTGAAGACCATCCAATCTCTTACCCCGACCATGA-GGCAGA
1 TTGAAGACCATCCAATCTTTTACCCTAACCA-GAGGGCAGA
* * *
84660 TTGAAG------C-A----GTACCCTAACTAGAAGGCAGA
1 TTGAAGACCATCCAATCTTTTACCCTAACCAGAGGGCAGA
* * ** *
84689 TTGAAG-TCATCCAATCTTTTTCCCTAATAATG-GGGTAGA
1 TTGAAGACCATCCAATCTTTTACCCTAACCA-GAGGGCAGA
* * **
84728 TTAAAGTA--ATTCAATCTTTTACCCTAATTAGAGGGCAGA
1 TTGAAG-ACCATCCAATCTTTTACCCTAACCAGAGGGCAGA
** ** * * *
84767 TTGAAG-CCAT-CAATCCCTTACCCCGA-CTGTGGGGCAAA
1 TTGAAGACCATCCAATCTTTTACCCTAACCAG-AGGGCAGA
* * *
84805 TTAAAGTA--ATCCAATCTTTTACCCTAACCAAAGGACAGA
1 TTGAAG-ACCATCCAATCTTTTACCCTAACCAGAGGGCAGA
* * * *
84844 TTAAAGACTATCCGATCTCTTACCCTGAA-CAGAGGGCAGA
1 TTGAAGACCATCCAATCTTTTACCCT-AACCAGAGGGCAGA
* * * **
84884 TTGAAGACCATCCGATATCTTACCCCGACCATG-GGGCAGA
1 TTGAAGACCATCCAATCTTTTACCCTAACCA-GAGGGCAGA
* *** *
84924 TTAAAGACCATTTGATCTTTTACCCTAACCAGAGAGCAGA
1 TTGAAGACCATCCAATCTTTTACCCTAACCAGAGGGCAGA
* * *
84964 TTGAAG-CCATCTAATCTCTTACCCCAACCATG-GGGCAGA
1 TTGAAGACCATCCAATCTTTTACCCTAACCA-GAGGGCAGA
* * * *
85003 TTAAAG-CAATCCAATCTTTTACCCTAACTAGAGGGCAAA
1 TTGAAGACCATCCAATCTTTTACCCTAACCAGAGGGCAGA
* * * ** * *
85042 TTGAAG-TCATCTAATCTCTTACCCCGACTATG-GGGCAAA
1 TTGAAGACCATCCAATCTTTTACCCTAACCA-GAGGGCAGA
* *
85081 TTGAAG-CAATCCAATCTTTTACCCTAACTAGAGGGCAGA
1 TTGAAGACCATCCAATCTTTTACCCTAACCAGAGGGCAGA
* * *
85120 TTGAAGACCATCCGATCTCTTA-CCTCAACCATGA-GGCTGA
1 TTGAAGACCATCCAATCTTTTACCCT-AACCA-GAGGGCAGA
* * * * *
85160 TTGAAAACCATCCGATCTCTTACCCCAACCATG-GGGTAGA
1 TTGAAGACCATCCAATCTTTTACCCTAACCA-GAGGGCAGA
* * *
85200 TTGAAGTA--ATTCAGATCTTTTACCCTAACCAGAGGGTATA
1 TTGAAG-ACCATCCA-ATCTTTTACCCTAACCAGAGGGCAGA
*
85240 TTGAAGTA--ATCCAGATCTTTTA-CCTCGACCATG-GGGCAGA
1 TTGAAG-ACCATCCA-ATCTTTTACCCT-AACCA-GAGGGCAGA
85280 TTGAAG-CCATC
1 TTGAAGACCATC
85291 AGATTGAAGA
Statistics
Matches: 524, Mismatches: 102, Indels: 90
0.73 0.14 0.13
Matches are distributed among these distances:
28 2 0.00
29 20 0.04
33 1 0.00
34 2 0.00
35 1 0.00
37 1 0.00
38 29 0.06
39 207 0.40
40 250 0.48
41 11 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (40 bp):
TTGAAGACCATCCAATCTTTTACCCTAACCAGAGGGCAGA
Found at i:84729 original size:39 final size:38
Alignment explanation
Indices: 84669--85125 Score: 155
Period size: 39 Copynumber: 11.7 Consensus size: 38
84659 ATTGAAGCAG
*
84669 TACCCTAACT-AGAAGGCAGATTGAAGTCATCCAATCTTT
1 TACCCTAA-TAAGAGGGCAGATTGAAGTCAT-CAATCTTT
* * * *
84708 TTCCCTAATAATG-GGGTAGATTAAAGTAATTCAATCTTT
1 TACCCTAATAA-GAGGGCAGATTGAAGTCA-TCAATCTTT
* * **
84747 TACCCTAATTAGAGGGCAGATTGAAGCCATCAATCCCT
1 TACCCTAATAAGAGGGCAGATTGAAGTCATCAATCTTT
* * ** * * *
84785 TACCCCGACTGTG-GGGCAAATTAAAGTAATCCAATCTTT
1 TA-CCCTAATAAGAGGGCAGATTGAAGTCAT-CAATCTTT
* * * * * *
84824 TACCCTAACCAA-AGGACAGATTAAAGACTATCCGATCTCT
1 TACCCTAA-TAAGAGGGCAGATTGAAGTC-AT-CAATCTTT
* * * * *
84864 TACCCTGAA-CAGAGGGCAGATTGAAGACCATCCGATATCT
1 TACCCT-AATAAGAGGGCAGATTGAAG-TCAT-CAATCTTT
* ** * * * **
84904 TACCCCGACCATG-GGGCAGATTAAAGACCATTTGATCTTT
1 TA-CCCTAATAAGAGGGCAGATTGAAG-TCA-TCAATCTTT
** * * *
84944 TACCCTAACCAGAGAGCAGATTGAAGCCATCTAATCTCT
1 TACCCTAATAAGAGGGCAGATTGAAGTCATC-AATCTTT
* * * *
84983 TACCCCAACCATG-GGGCAGATTAAAG-CAATCCAATCTTT
1 TACCCTAA-TAAGAGGGCAGATTGAAGTC-AT-CAATCTTT
* *
85022 TACCCTAACT-AGAGGGCAAATTGAAGTCATCTAATCTCT
1 TACCCTAA-TAAGAGGGCAGATTGAAGTCATC-AATCTTT
* * * *
85061 TACCCCGACTATG-GGGCAAATTGAAG-CAATCCAATCTTT
1 TA-CCCTAATAAGAGGGCAGATTGAAGTC-AT-CAATCTTT
85100 TACCCTAACT-AGAGGGCAGATTGAAG
1 TACCCTAA-TAAGAGGGCAGATTGAAG
85126 ACCATCCGAT
Statistics
Matches: 313, Mismatches: 76, Indels: 58
0.70 0.17 0.13
Matches are distributed among these distances:
38 38 0.12
39 181 0.58
40 86 0.27
41 8 0.03
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (38 bp):
TACCCTAATAAGAGGGCAGATTGAAGTCATCAATCTTT
Found at i:84770 original size:286 final size:286
Alignment explanation
Indices: 84247--84771 Score: 757
Period size: 286 Copynumber: 1.8 Consensus size: 286
84237 ACAATCATCT
* * * * *
84247 AATCTTTTACCCTAATTAGAGGGCAGATTGAAGACCATCAGATCTTTTTTAAGATCATCCAATCT
1 AATCTTTTACCCTAATCAAAGGGCAGATTGAAGACCATCAAATCTTTTTGAAGACCATCCAATCT
* * * * * *
84312 TTTACCCTAGCTAGATGGCAGATTGAAGACCATCTAATCTGTTACCCTGACCATGGGGTAGATTA
66 TTTACCCTAGCTAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCAGATTA
* * *
84377 AAGCAGTACCCTAACTAGAGGGCAAATTGAAGTCATCCAATCTCTTATCCCGACCATCGGGCAGA
131 AAGCAGTACCCTAACTAGAAGGCAAATTGAAGTCATCCAATCTCTTATCCCAACAATCGGGCAGA
* * *
84442 TTGAAGCAATTCAATTTTTTACCCTAACCAGAGGGTAGATTGAAATCATCCAATCTTTTACCTTA
196 TTAAAGCAATTCAATCTTTTACCCTAACCAGAGGGCAGATTGAAATCATCCAATCTTTTACCTTA
84507 ATCAGAGGACAGATTGAAGACCATTC
261 ATCAGAGGACAGATTGAAGACCATTC
* *
84533 AATCTTTTACCCTAATCAAATGGCAGATTGAAGACCATCAAATCTTTTTGAAGACCATTCAATCT
1 AATCTTTTACCCTAATCAAAGGGCAGATTGAAGACCATCAAATCTTTTTGAAGACCATCCAATCT
*
84598 TTTACCCTA-ATCAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCAGATT
66 TTTACCCTAGCT-AGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCAGATT
* * * * * *
84662 GAAGCAGTACCCTAACTAGAAGGCAGATTGAAGTCATCCAATCT-TTTTCCCTAATAATGGGGTA
130 AAAGCAGTACCCTAACTAGAAGGCAAATTGAAGTCATCCAATCTCTTATCCC-AACAATCGGGCA
* **
84726 GATTAAAGTAATTCAATCTTTTACCCTAATTAGAGGGCAGATTGAA
194 GATTAAAGCAATTCAATCTTTTACCCTAACCAGAGGGCAGATTGAA
84772 GCCATCAATC
Statistics
Matches: 208, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
285 7 0.03
286 201 0.97
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (286 bp):
AATCTTTTACCCTAATCAAAGGGCAGATTGAAGACCATCAAATCTTTTTGAAGACCATCCAATCT
TTTACCCTAGCTAGAGGGCAGATTGAAGACCATCCAATCTCTTACCCCGACCATGAGGCAGATTA
AAGCAGTACCCTAACTAGAAGGCAAATTGAAGTCATCCAATCTCTTATCCCAACAATCGGGCAGA
TTAAAGCAATTCAATCTTTTACCCTAACCAGAGGGCAGATTGAAATCATCCAATCTTTTACCTTA
ATCAGAGGACAGATTGAAGACCATTC
Found at i:85164 original size:276 final size:275
Alignment explanation
Indices: 84669--85286 Score: 796
Period size: 276 Copynumber: 2.2 Consensus size: 275
84659 ATTGAAGCAG
* * * ** *
84669 TACCCTAACTAGA-AGGCAGATTGAAGTCATCCAATCTTTTTCCCTAATAATGGGGTAGATTAAA
1 TACCCTAACCAGAGA-GCAGATTGAAGTCATCCAATCTTTTACCCCAACCATGGGGCAGATTAAA
* * * * *
84733 GTAATTCAATCTTTTACCCTAATTAGAGGGCAGATTGAAGCCATCAATCCCTTACCCCGACTGTG
65 GCAATCCAATCTTTTACCCTAACTAGAGGGCAAATTGAAGCCATCAATCCCTTACCCCGACTATG
* *
84798 GGGCAAATTAAAGTAATCCAATCTTTTACCCTAACCAAAGGACAGATTAAAGACTATCCGATCTC
130 GGGCAAATTAAAGCAATCCAATCTTTTACCCTAACCAAAGGACAGATTAAAGACCATCCGATCTC
* * *
84863 TTACCCTGAACAGAGGGCAGATTGAAGACCATCCGATATCTTACCCCGACCATGGGGCAGATTAA
195 TTACCCTCAACAGAGGGCAGATTGAAAACCATCCGATATCTTACCCCAACCATGGGGCAGATTAA
*
84928 AG-ACCATT-TGATCTTT
260 AGTA--ATTCAGATCTTT
* * *
84944 TACCCTAACCAGAGAGCAGATTGAAGCCATCTAATCTCTTACCCCAACCATGGGGCAGATTAAAG
1 TACCCTAACCAGAGAGCAGATTGAAGTCATCCAATCTTTTACCCCAACCATGGGGCAGATTAAAG
* *
85009 CAATCCAATCTTTTACCCTAACTAGAGGGCAAATTGAAGTCATCTAATCTCTTACCCCGACTATG
66 CAATCCAATCTTTTACCCTAACTAGAGGGCAAATTGAAGCCATC-AATCCCTTACCCCGACTATG
* * * * *
85074 GGGCAAATTGAAGCAATCCAATCTTTTACCCTAACTAGAGGGCAGATTGAAGACCATCCGATCTC
130 GGGCAAATTAAAGCAATCCAATCTTTTACCCTAACCAAAGGACAGATTAAAGACCATCCGATCTC
* * *
85139 TTA-CCTCAACCATGA-GGCTGATTGAAAACCATCCGATCTCTTACCCCAACCATGGGGTAGATT
195 TTACCCTCAA-CA-GAGGGCAGATTGAAAACCATCCGATATCTTACCCCAACCATGGGGCAGATT
*
85202 GAAGTAATTCAGATCTTT
258 AAAGTAATTCAGATCTTT
* * * * * * *
85220 TACCCTAACCAGAGGGTATATTGAAGTAATCCAGATCTTTTACCTCGACCATGGGGCAGATTGAA
1 TACCCTAACCAGAGAGCAGATTGAAGTCATCCA-ATCTTTTACCCCAACCATGGGGCAGATTAAA
85285 GC
65 GC
85287 CATCAGATTG
Statistics
Matches: 295, Mismatches: 41, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
275 101 0.34
276 162 0.55
277 32 0.11
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (275 bp):
TACCCTAACCAGAGAGCAGATTGAAGTCATCCAATCTTTTACCCCAACCATGGGGCAGATTAAAG
CAATCCAATCTTTTACCCTAACTAGAGGGCAAATTGAAGCCATCAATCCCTTACCCCGACTATGG
GGCAAATTAAAGCAATCCAATCTTTTACCCTAACCAAAGGACAGATTAAAGACCATCCGATCTCT
TACCCTCAACAGAGGGCAGATTGAAAACCATCCGATATCTTACCCCAACCATGGGGCAGATTAAA
GTAATTCAGATCTTT
Found at i:85243 original size:120 final size:119
Alignment explanation
Indices: 84853--85284 Score: 339
Period size: 119 Copynumber: 3.6 Consensus size: 119
84843 ATTAAAGACT
* * * * *
84853 ATCCGATCTCTTACCCTGAA-CAGAGGGCAGATTGAAG-ACCATCC-GATATCTTACCCCGACCA
1 ATCCAATCTTTTACCCT-AACCAGAGGGCAGATTGAAGTA--ATCCAGATCTCTTACCTCAACCA
* ** * * * * *
84915 TGGGGCAGATT-AAAGACCATTTGATCTTTTACCCTAACCA-GAGAGCAGATTGAAGCC
63 TGAGGCAGATTGAAA-ACCATCCGATCTCTTACCCCAACCATG-GGGCAAATTGAAGCA
* * * * * * *
84972 ATCTAATCTCTTACCCCAACCATG-GGGCAGATTAAAGCAATCCA-ATCTTTTACC-CTAACTA-
1 ATCCAATCTTTTACCCTAACCA-GAGGGCAGATTGAAGTAATCCAGATCTCTTACCTC-AACCAT
* ** ** * *
85033 GAGGGCAAATTG-AAGTCATCTAATCTCTTACCCCGACTATGGGGCAAATTGAAGCA
64 GA-GGCAGATTGAAAACCATCCGATCTCTTACCCCAACCATGGGGCAAATTGAAGCA
*
85089 ATCCAATCTTTTACCCTAACTAGAGGGCAGATTGAAG-ACCATCC-GATCTCTTACCTCAACCAT
1 ATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGTA--ATCCAGATCTCTTACCTCAACCAT
* * * *
85152 GAGGCTGATTGAAAACCATCCGATCTCTTACCCCAACCATGGGGTAGATTGAAGTA
64 GAGGCAGATTGAAAACCATCCGATCTCTTACCCCAACCATGGGGCAAATTGAAGCA
* * * * *
85208 ATTCAGATCTTTTACCCTAACCAGAGGGTATATTGAAGTAATCCAGATCTTTTACCTCGACCATG
1 ATCCA-ATCTTTTACCCTAACCAGAGGGCAGATTGAAGTAATCCAGATCTCTTACCTCAACCATG
*
85273 GGGCAGATTGAA
65 AGGCAGATTGAA
85285 GCCATCAGAT
Statistics
Matches: 248, Mismatches: 47, Indels: 35
0.75 0.14 0.11
Matches are distributed among these distances:
116 2 0.01
117 61 0.25
118 51 0.21
119 74 0.30
120 59 0.24
121 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (119 bp):
ATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGTAATCCAGATCTCTTACCTCAACCATGA
GGCAGATTGAAAACCATCCGATCTCTTACCCCAACCATGGGGCAAATTGAAGCA
Found at i:91842 original size:8 final size:8
Alignment explanation
Indices: 91829--91856 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
91819 TCTTTTTCGC
91829 AAAAAAAT
1 AAAAAAAT
91837 AAAAAAAT
1 AAAAAAAT
91845 AAAAAAAT
1 AAAAAAAT
91853 AAAA
1 AAAA
91857 TTATATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAAAT
Found at i:94940 original size:31 final size:31
Alignment explanation
Indices: 94900--94965 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
94890 TTTAGTACTC
* *
94900 AAACTTGACACTTTTTTCT-AATTTGGTACCT
1 AAACATGACA-TTTTTTCTAAAGTTGGTACCT
* *
94931 AAACATGACATTTTTTTTAAAGTTGGTACTT
1 AAACATGACATTTTTTCTAAAGTTGGTACCT
94962 AAAC
1 AAAC
94966 TTTTTGGAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (31 bp):
AAACATGACATTTTTTCTAAAGTTGGTACCT
Found at i:94949 original size:90 final size:91
Alignment explanation
Indices: 94850--95023 Score: 221
Period size: 90 Copynumber: 1.9 Consensus size: 91
94840 TGAACTTGAT
* * ***
94850 ATTTTTTTT-AATTTGGTACTTAAAATTTTTTTTTGTCCAATTT-AGTA-CTCAAACTTGACACT
1 ATTTTTTTTAAAGTTGGTACTT-AAACTTTTTGGAGTCCAATTTGA-TATCT-AAACTTGACACT
94912 TTTTTC-TAATTTGGTACCTAAACATGAC
63 TTTTTCTTAATTTGGTACCTAAACATGAC
* **
94940 ATTTTTTTTAAAGTTGGTACTTAAACTTTTTGGAGTCCAATTTGATATCTGAACTTGACTTTTTT
1 ATTTTTTTTAAAGTTGGTACTTAAACTTTTTGGAGTCCAATTTGATATCTAAACTTGACACTTTT
95005 TTCTTAATTTGGTACCTAA
66 TTCTTAATTTGGTACCTAA
95024 TATTTTTTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
90 43 0.60
91 29 0.40
ACGTcount: A:0.26, C:0.13, G:0.11, T:0.49
Consensus pattern (91 bp):
ATTTTTTTTAAAGTTGGTACTTAAACTTTTTGGAGTCCAATTTGATATCTAAACTTGACACTTTT
TTCTTAATTTGGTACCTAAACATGAC
Found at i:95271 original size:26 final size:26
Alignment explanation
Indices: 95184--95271 Score: 77
Period size: 26 Copynumber: 3.2 Consensus size: 26
95174 AATTGAATCT
* * *
95184 AAAAAAAGTTTAGGTATCAAATTAGGAA
1 AAAAAAAGTTTAGATACCAAATTA--AG
**
95212 AAAATACCAAGTTTAGATACCAAATTGGG
1 AAAA-A--AAGTTTAGATACCAAATTAAG
*
95241 TAAAAAAGTTTAGATACCAAATTAAG
1 AAAAAAAGTTTAGATACCAAATTAAG
95267 AAAAA
1 AAAAA
95272 GTGTCAAGTT
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
26 23 0.48
28 5 0.10
29 4 0.08
31 16 0.33
ACGTcount: A:0.53, C:0.08, G:0.15, T:0.24
Consensus pattern (26 bp):
AAAAAAAGTTTAGATACCAAATTAAG
Found at i:95280 original size:57 final size:57
Alignment explanation
Indices: 95185--95293 Score: 146
Period size: 57 Copynumber: 1.9 Consensus size: 57
95175 ATTGAATCTA
* * * *
95185 AAAAAAGTTTAGGTATCAAATTAGGAAAAAATACCAAGTTTAGATACCAAATTGGGT
1 AAAAAAGTTTAGATACCAAATTAAGAAAAAATACCAAGTTCAGATACCAAATTGGGT
* ** *
95242 AAAAAAGTTTAGATACCAAATTAAGAAAAAGTGTCAAGTTCAGGTACCAAAT
1 AAAAAAGTTTAGATACCAAATTAAGAAAAAATACCAAGTTCAGATACCAAAT
95294 ATTATATTAA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 44 1.00
ACGTcount: A:0.49, C:0.10, G:0.17, T:0.25
Consensus pattern (57 bp):
AAAAAAGTTTAGATACCAAATTAAGAAAAAATACCAAGTTCAGATACCAAATTGGGT
Found at i:95350 original size:23 final size:21
Alignment explanation
Indices: 95306--95350 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
95296 TATATTAAGC
*
95306 AAAAAAAAAAAAAATCGGAAA
1 AAAAAAAAAAAAAAACGGAAA
*
95327 AAAAAAAGAACAAAAAACGTAAA
1 AAAAAAA-AA-AAAAAACGGAAA
95350 A
1 A
95351 TTTTGAGGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 2 0.10
23 11 0.55
ACGTcount: A:0.80, C:0.07, G:0.09, T:0.04
Consensus pattern (21 bp):
AAAAAAAAAAAAAAACGGAAA
Found at i:98974 original size:16 final size:18
Alignment explanation
Indices: 98948--98980 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
98938 TTTCCCAAAA
98948 TAAATTAATTT-CTCAAT
1 TAAATTAATTTACTCAAT
98965 TAAA-TAATTTACTCAA
1 TAAATTAATTTACTCAA
98981 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAATTAATTTACTCAAT
Found at i:114072 original size:17 final size:18
Alignment explanation
Indices: 114034--114073 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
114024 TTTTATTTTT
*
114034 AAAAGTACTTTTGACATG
1 AAAAGTACTTTTGACATC
*
114052 AAAAGTATTTTTGA-ATC
1 AAAAGTACTTTTGACATC
114069 AAAAG
1 AAAAG
114074 CAATGTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.45, C:0.07, G:0.15, T:0.33
Consensus pattern (18 bp):
AAAAGTACTTTTGACATC
Found at i:114195 original size:21 final size:19
Alignment explanation
Indices: 114165--114203 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
114155 TAAACAATTA
114165 ATTTTTAAAAGAAATTTTTG
1 ATTTTTAAAA-AAATTTTTG
*
114185 ATTTTTCAAAAATATTTTT
1 ATTTTT-AAAAAAATTTTT
114204 TTTCACGGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (19 bp):
ATTTTTAAAAAAATTTTTG
Found at i:120419 original size:30 final size:29
Alignment explanation
Indices: 120384--120907 Score: 322
Period size: 30 Copynumber: 17.6 Consensus size: 29
120374 GAATTTCTTA
* *
120384 AAAATCACATTTTGACCCTCGAACTTCCC
1 AAAATCACATTTTAACCCTCAAACTTCCC
* * *
120413 AAAAATCATATTTTAACCCTCAAACATTTCT
1 -AAAATCACATTTTAACCCTCAAAC-TTCCC
* * * *
120444 AAAATCACATTTTAACCTTAAAACTTTTCT
1 AAAATCACATTTTAACCCTCAAAC-TTCCC
* *
120474 AAAATCACATTTTAACCCTTAAACTTTTCC
1 AAAATCACATTTTAACCCTCAAAC-TTCCC
* * *
120504 AAAATCATATTTTCACCCCCAAACTTCTCC
1 AAAATCACATTTTAACCCTCAAACTTC-CC
* * * *
120534 AAAATCATATTTTGACCATCGAACTTCCC
1 AAAATCACATTTTAACCCTCAAACTTCCC
* ***
120563 AAAAATCACATTTTAACCCTTAAACATTTTT
1 -AAAATCACATTTTAACCCTCAAAC-TTCCC
* * * *
120594 ACAATCACATTTTAACCCTAAAACTTTTCT
1 AAAATCACATTTTAACCCTCAAAC-TTCCC
* *
120624 AAAATCACATTTTAACCCCCAAACTTTTCC
1 AAAATCACATTTTAACCCTCAAAC-TTCCC
** *
120654 AAAATCGTATTTTCACCCTCAAACTTCTCC
1 AAAATCACATTTTAACCCTCAAACTTC-CC
* *
120684 AAAATCACATTTTAACCC-CTAAACCTTTCT
1 AAAATCACATTTTAACCCTC-AAA-CTTCCC
* **
120714 AAAATCACATTTTAA-TCTCGAAACTTTTTC
1 AAAATCACATTTTAACCCTC-AAAC-TTCCC
* *
120744 AAAATCATATTTTCA-CCTCTAAACTTCTCC
1 AAAATCACATTTTAACCCTC-AAACTTC-CC
* ** *
120774 AAAATCACATTTTGACCAGCAAACCTTTCC
1 AAAATCACATTTTAACCCTCAAA-CTTCCC
* * * * * *
120804 ACAATCACATTTTGACGCC-AAAATTTTCT
1 AAAATCACATTTTAAC-CCTCAAACTTCCC
* * *
120833 AAAATCACCTTTTAACCC-CAAACTTTCT
1 AAAATCACATTTTAACCCTCAAACTTCCC
* * *
120861 AAAATTACATTTTTACCCAT-AAACTTTTCC
1 AAAATCACATTTTAACCC-TCAAAC-TTCCC
* *
120891 AAAATTATATTTTAACC
1 AAAATCACATTTTAACC
120908 TCGAACTCTC
Statistics
Matches: 400, Mismatches: 78, Indels: 32
0.78 0.15 0.06
Matches are distributed among these distances:
28 25 0.06
29 32 0.08
30 329 0.82
31 14 0.04
ACGTcount: A:0.36, C:0.27, G:0.02, T:0.35
Consensus pattern (29 bp):
AAAATCACATTTTAACCCTCAAACTTCCC
Found at i:120478 original size:60 final size:58
Alignment explanation
Indices: 120384--120907 Score: 417
Period size: 60 Copynumber: 8.8 Consensus size: 58
120374 GAATTTCTTA
* * * *
120384 AAAATCACATTTTGACCCTCGAAC-TTCCCAAAAATCATATTTTAACCCTCAAACATTTCT
1 AAAATCACATTTTAACCC-CAAACTTTTCC-AAAATCACATTTTAACCCTCAAAC-TTTCT
** * * *
120444 AAAATCACATTTTAACCTTAAAACTTTTCTAAAATCACATTTTAACCCTTAAACTTTTCC
1 AAAATCACATTTTAACC-CCAAACTTTTCCAAAATCACATTTTAACCCTCAAAC-TTTCT
* * * * * * * * *
120504 AAAATCATATTTTCACCCCCAAACTTCTCCAAAATCATATTTTGACCATCGAACTTCCCA
1 AAAATCACATTTT-AACCCCAAACTTTTCCAAAATCACATTTTAACCCTCAAACTT-TCT
* * * *
120564 AAAATCACATTTTAACCCTTAAACATTTT-TACAATCACATTTTAACCCTAAAACTTTTCT
1 AAAATCACATTTTAACCC-CAAAC-TTTTCCAAAATCACATTTTAACCCTCAAAC-TTTCT
** * *
120624 AAAATCACATTTTAACCCCCAAACTTTTCCAAAATCGTATTTTCACCCTCAAACTTCTCC
1 AAAATCACATTTTAA-CCCCAAACTTTTCCAAAATCACATTTTAACCCTCAAACTT-TCT
* * * *
120684 AAAATCACATTTTAACCCCTAAACCTTTCTAAAATCACATTTTAA-TCTCGAAACTTTTT
1 AAAATCACATTTTAACCCC-AAACTTTTCCAAAATCACATTTTAACCCTC-AAACTTTCT
* * * * * ** *
120743 CAAAATCATATTTTCACCTCTAAACTTCTCCAAAATCACATTTTGACCAGCAAACCTTTCC
1 -AAAATCACATTTTAACC-CCAAACTTTTCCAAAATCACATTTTAACCCTCAAA-CTTTCT
* * * * * *
120804 ACAATCACATTTTGACGCCAAAATTTTCTAAAATCACCTTTTAACCC-CAAACTTTCT
1 AAAATCACATTTTAACCCCAAACTTTTCCAAAATCACATTTTAACCCTCAAACTTTCT
* * * * *
120861 AAAATTACATTTTTACCCATAAACTTTTCCAAAATTATATTTTAACC
1 AAAATCACATTTTAACCC-CAAACTTTTCCAAAATCACATTTTAACC
120908 TCGAACTCTC
Statistics
Matches: 361, Mismatches: 86, Indels: 36
0.75 0.18 0.07
Matches are distributed among these distances:
57 19 0.05
58 26 0.07
59 43 0.12
60 253 0.70
61 20 0.06
ACGTcount: A:0.36, C:0.27, G:0.02, T:0.35
Consensus pattern (58 bp):
AAAATCACATTTTAACCCCAAACTTTTCCAAAATCACATTTTAACCCTCAAACTTTCT
Found at i:120538 original size:90 final size:89
Alignment explanation
Indices: 120384--120909 Score: 440
Period size: 90 Copynumber: 5.9 Consensus size: 89
120374 GAATTTCTTA
* * * * * *
120384 AAAATCACATTTTGACCCTCGAAC-TTCCCAAAAATCATATTTTAACCCTCAAACATTTCTAAAA
1 AAAATCACATTTTAACCCTCAAACTTTTCC-AAAATCACATTTTAACCCCCAAAC-TTTCCAAAA
*
120448 TCACATTTTAACCTTAAAACTTTTCT
64 TCACATTTTAACCTCAAAACTTTTCT
* * *
120474 AAAATCACATTTTAACCCTTAAACTTTTCCAAAATCATATTTTCACCCCCAAACTTCTCCAAAAT
1 AAAATCACATTTTAACCCTCAAACTTTTCCAAAATCACATTTTAACCCCCAAACTT-TCCAAAAT
* * * ** *
120539 CATATTTTGACCATC-GAACTTCCCA
65 CACATTTTAACC-TCAAAACTTTTCT
* * * ** *
120564 AAAATCACATTTTAACCCTTAAACATTTT-TACAATCACATTTTAACCCTAAAACTTTTCTAAAA
1 AAAATCACATTTTAACCCTCAAAC-TTTTCCAAAATCACATTTTAACCCCCAAAC-TTTCCAAAA
* * *
120628 TCACATTTTAACCCCCAAACTTTTCC
64 TCACATTTTAACCTCAAAACTTTTCT
** * * * *
120654 AAAATCGTATTTTCACCCTCAAACTTCTCCAAAATCACATTTTAACCCCTAAACCTTTCTAAAAT
1 AAAATCACATTTTAACCCTCAAACTTTTCCAAAATCACATTTTAACCCCCAAA-CTTTCCAAAAT
* *
120719 CACATTTTAATCTCGAAACTTTT-T
65 CACATTTTAACCTCAAAACTTTTCT
* * * * ** *
120743 CAAAATCATATTTTCA-CCTCTAAACTTCTCCAAAATCACATTTTGACCAGCAAACCTTTCCACA
1 -AAAATCACATTTTAACCCTC-AAACTTTTCCAAAATCACATTTTAACCCCCAAA-CTTTCCAAA
*
120807 ATCACATTTTGACGC-CAAAA-TTTTCT
63 ATCACATTTTAAC-CTCAAAACTTTTCT
* * * * **
120833 AAAATCACCTTTTAACCC-CAAAC-TTTCTAAAATTACATTTTTACCCATAAACTTTTCCAAAAT
1 AAAATCACATTTTAACCCTCAAACTTTTCCAAAATCACATTTTAACCCCCAAAC-TTTCCAAAAT
* *
120896 TATATTTTAACCTC
65 CACATTTTAACCTC
120910 GAACTCTCCG
Statistics
Matches: 356, Mismatches: 65, Indels: 33
0.78 0.14 0.07
Matches are distributed among these distances:
86 2 0.01
87 39 0.11
88 4 0.01
89 27 0.08
90 271 0.76
91 13 0.04
ACGTcount: A:0.36, C:0.27, G:0.02, T:0.35
Consensus pattern (89 bp):
AAAATCACATTTTAACCCTCAAACTTTTCCAAAATCACATTTTAACCCCCAAACTTTCCAAAATC
ACATTTTAACCTCAAAACTTTTCT
Found at i:120655 original size:150 final size:150
Alignment explanation
Indices: 120384--120816 Score: 534
Period size: 150 Copynumber: 2.9 Consensus size: 150
120374 GAATTTCTTA
* *
120384 AAAATCACATTTTGACCCTCGAACTTCCCAAAAATCATATTTTAACCCTCAAACATTTCTAAAAT
1 AAAATCACATTTTGACCATCGAACTTCCCAAAAATCACATTTTAACCCTCAAACATTTCTAAAAT
* **
120449 CACATTTTAACCTTAAAACTTTTCTAAAATCACATTTTAACCCTTAAACTTTTCCAAAATCATAT
66 CACATTTTAACCCTAAAACTTTTCTAAAATCACATTTTAACCCCCAAACTTTTCCAAAATCATAT
120514 TTTCACCCCCAAACTTCTCC
131 TTTCACCCCCAAACTTCTCC
* * * *
120534 AAAATCATATTTTGACCATCGAACTTCCCAAAAATCACATTTTAACCCTTAAACATTTTTACAAT
1 AAAATCACATTTTGACCATCGAACTTCCCAAAAATCACATTTTAACCCTCAAACATTTCTAAAAT
*
120599 CACATTTTAACCCTAAAACTTTTCTAAAATCACATTTTAACCCCCAAACTTTTCCAAAATCGTAT
66 CACATTTTAACCCTAAAACTTTTCTAAAATCACATTTTAACCCCCAAACTTTTCCAAAATCATAT
*
120664 TTTCACCCTCAAACTTCTCC
131 TTTCACCCCCAAACTTCTCC
* * * * * * *
120684 AAAATCACATTTTAACC-CCTAAACCTT-TCTAAAATCACATTTTAA-TCTCGAAAC-TTTTTCA
1 AAAATCACATTTTGACCATC-GAA-CTTCCCAAAAATCACATTTTAACCCTC-AAACATTTCT-A
* * * * * ** * *
120745 AAATCATATTTTCACCTCT-AAACTTCTCCAAAATCACATTTTGACCAGCAAACCTTTCCACAAT
62 AAATCACATTTTAACC-CTAAAACTTTTCTAAAATCACATTTTAACCCCCAAACTTTTCCAAAAT
*
120809 CACATTTT
126 CATATTTT
120817 GACGCCAAAA
Statistics
Matches: 247, Mismatches: 31, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
149 8 0.03
150 234 0.95
151 5 0.02
ACGTcount: A:0.36, C:0.28, G:0.02, T:0.34
Consensus pattern (150 bp):
AAAATCACATTTTGACCATCGAACTTCCCAAAAATCACATTTTAACCCTCAAACATTTCTAAAAT
CACATTTTAACCCTAAAACTTTTCTAAAATCACATTTTAACCCCCAAACTTTTCCAAAATCATAT
TTTCACCCCCAAACTTCTCC
Found at i:129096 original size:29 final size:29
Alignment explanation
Indices: 129053--129113 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
129043 ATAAGGATAA
*
129053 ATCCTGAAGATATGGAGAAAACCACATTT
1 ATCCTGAAGACATGGAGAAAACCACATTT
*
129082 ATCCTGAAGACATGGAGAAAACCATATTT
1 ATCCTGAAGACATGGAGAAAACCACATTT
129111 ATC
1 ATC
129114 ACACTATAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (29 bp):
ATCCTGAAGACATGGAGAAAACCACATTT
Found at i:132827 original size:39 final size:39
Alignment explanation
Indices: 132784--132914 Score: 145
Period size: 39 Copynumber: 3.4 Consensus size: 39
132774 TAGTCTTCCG
* *
132784 ATCTCTTACCTCAATCATGGGGCAAATTACAATCAATCA
1 ATCTCTTACCCCGATCATGGGGCAAATTACAATCAATCA
* * * * * ** *
132823 ATCTCTTACCCCGAGCTTGGGGCAGATTGCATTCGTTCG
1 ATCTCTTACCCCGATCATGGGGCAAATTACAATCAATCA
* * *
132862 ATCTCTTACCCCGATCATGGGGCAAACTACCATCAACCA
1 ATCTCTTACCCCGATCATGGGGCAAATTACAATCAATCA
132901 ATCTCTTACCCCGA
1 ATCTCTTACCCCGA
132915 GCCTAGGGTA
Statistics
Matches: 71, Mismatches: 21, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (39 bp):
ATCTCTTACCCCGATCATGGGGCAAATTACAATCAATCA
Found at i:132879 original size:78 final size:78
Alignment explanation
Indices: 132745--133472 Score: 632
Period size: 78 Copynumber: 9.3 Consensus size: 78
132735 GAAAATTTCG
* * ** * * * * * *
132745 ATCTCTCACCCCGAGCTTGGGGCAGATTGTAGTC-TTCCGATCTCTTACCTCAATCATGGGGCAA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTGCAACCATT-CGATCTCTTACCCCGAGCTTGAGGCAG
* * *
132809 ATTACAATCAATCA
65 ATCACCATCAACCA
** * * * *
132823 ATCTCTTACCCCGAGCTTGGGGCAGATTGCATTCGTTCGATCTCTTACCCCGATCATGGGGCA-A
1 ATCTCTTACCCCGAGCTTGGGGCAGATTGCAACCATTCGATCTCTTACCCCGAGCTTGAGGCAGA
*
132887 ACTACCATCAACCA
66 TC-ACCATCAACCA
* * * * * * * *
132901 ATCTCTTACCCCGAGCCTAGGGTAGATTGCAACCAATCGATCTTTTACCCCAAGCTTAAGGCAAA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTGCAACCATTCGATCTCTTACCCCGAGCTTGAGGCAGA
* * *
132966 TCACCATTAGCAA
66 TCACCATCAACCA
* *** * ** *
132979 ATCTCTTACCCCGAGCTTGAGGCAGATTATGACCATTCGATCTTTTACCTTGAGCTTGAGGTAGA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTGCAACCATTCGATCTCTTACCCCGAGCTTGAGGCAGA
*
133044 TCACCATCAGCCA
66 TCACCATCAACCA
* * * * * * **
133057 ATCTCTTACCCCGAGCTTGAGGCAGATTGTAACCATTCGATCTTTTACCCCAAACTTAAGATAGA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTGCAACCATTCGATCTCTTACCCCGAGCTTGAGGCAGA
133122 TCACCATCAACCA
66 TCACCATCAACCA
** * * * * * *
133135 ATCTCTTACCCCGAGCTTAAGGTAGATTACAACCATCCGATCTTTTACCTCGAGCTCGAGGCAGA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTGCAACCATTCGATCTCTTACCCCGAGCTTGAGGCAGA
*
133200 TCACTATCAACCA
66 TCACCATCAACCA
* ** ** *
133213 ATCTCTTACCCCGAGCTTGGGGCAGATTACAGTCACCCAATCTCTTACCCCGAGCTTGAGGCAGA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTGCAACCATTCGATCTCTTACCCCGAGCTTGAGGCAGA
*
133278 TCACCATCACCCA
66 TCACCATCAACCA
* * * * * * * * * * *
133291 ATCTCTTATCCCAAGCCTGGGGTAGATTGTAGCTATCCGATTTCTTACCCCGAGCTTGGGGTAGA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTGCAACCATTCGATCTCTTACCCCGAGCTTGAGGCAGA
*
133356 TCACCATCAGCCA
66 TCACCATCAACCA
* * * * * * * *
133369 ATCTCTTACCTCGAGCCTGAGGCAGATTGCAGCTATCCGATCTCTTACCCCAAGCATGAGGCAGA
1 ATCTCTTACCCCGAGCTTGGGGCAGATTGCAACCATTCGATCTCTTACCCCGAGCTTGAGGCAGA
*
133434 TCACCATCAGCCA
66 TCACCATCAACCA
* * *
133447 ATCTCTTACCTCGAGCCTAGGGCAGA
1 ATCTCTTACCCCGAGCTTGGGGCAGA
133473 GCATCATCAG
Statistics
Matches: 544, Mismatches: 103, Indels: 6
0.83 0.16 0.01
Matches are distributed among these distances:
77 1 0.00
78 539 0.99
79 4 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (78 bp):
ATCTCTTACCCCGAGCTTGGGGCAGATTGCAACCATTCGATCTCTTACCCCGAGCTTGAGGCAGA
TCACCATCAACCA
Found at i:133471 original size:39 final size:39
Alignment explanation
Indices: 132821--133587 Score: 292
Period size: 39 Copynumber: 19.7 Consensus size: 39
132811 TACAATCAAT
* ** *
132821 CAATCTCTTACCCCGAGCTTGGGGCAGAT-TGCATTC-GTT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCA-TCAG-C
* * * * *
132860 CGATCTCTTACCCCGATCATGGGGCA-AACTACCATCAAC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATC-ACCATCAGC
* * ** * * **
132899 CAATCTCTTACCCCGAGCCTAGGGTAGATTGCAACCAAT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
* * * * ** * *
132938 CGATCTTTTACCCCAAGCTTAAGGCAAATCACCATTAGC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
* * * * ** * **
132977 AAATCTCTTACCCCGAGCTTGAGGCAGATTATGACCATT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
* * ** * * *
133016 CGATCTTTTACCTTGAGCTTGAGGTAGATCACCATCAGC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
* * **** * **
133055 CAATCTCTTACCCCGAGCTTGAGGCAGATTGTAACCATT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
* * * * * ** ** *
133094 CGATCTTTTACCCCAAACTTAAGATAGATCACCATCAAC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
* ** * * * * *
133133 CAATCTCTTACCCCGAGCTTAAGGTAGATTACAACCATC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
* * * * * *
133172 CGATCTTTTACCTCGAG-CTCGAGGCAGATCACTATCAAC
1 CAATCTCTTACCCCGAGCCT-GGGGCAGATCACCATCAGC
* * *
133211 CAATCTCTTACCCCGAGCTTGGGGCAGATTA-CAGTCACC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCA-TCAGC
* * *
133250 CAATCTCTTACCCCGAGCTTGAGGCAGATCACCATCACC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
* * * * * *
133289 CAATCTCTTATCCCAAGCCTGGGGTAGATTGTAGC-T-ATC
1 CAATCTCTTACCCCGAGCCTGGGGCAGA-T-CACCATCAGC
* * * *
133328 CGATTTCTTACCCCGAGCTTGGGGTAGATCACCATCAGC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
* * * *
133367 CAATCTCTTACCTCGAGCCTGAGGCAGATTGCAGC-T-ATC
1 CAATCTCTTACCCCGAGCCTGGGGCAGA-T-CACCATCAGC
* * * *
133406 CGATCTCTTACCCCAAGCATGAGGCAGATCACCATCAGC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
* * * * *
133445 CAATCTCTTACCTCGAGCCTAGGGCAGAGCATCATCAGT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
** * * **** * **
133484 CAATCTCTTACCTTGAACCTGGGGCAAATTGTAACCATT
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
* * * * * * *
133523 CGATCTTTTACCCCGATCATAGGACAGATCACCTTCAGC
1 CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
*
133562 CAATCTCTTACCCCGAGCCAGGGGCA
1 CAATCTCTTACCCCGAGCCTGGGGCA
133588 AATTGTAACC
Statistics
Matches: 526, Mismatches: 186, Indels: 32
0.71 0.25 0.04
Matches are distributed among these distances:
37 5 0.01
38 7 0.01
39 499 0.95
40 10 0.02
41 5 0.01
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (39 bp):
CAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGC
Found at i:133534 original size:78 final size:78
Alignment explanation
Indices: 133447--133614 Score: 192
Period size: 78 Copynumber: 2.2 Consensus size: 78
133437 CCATCAGCCA
* * * * * ** *
133447 ATCTCTTACCTCGAGCCTAGGGCAGAGCATCATCAGTCAATCTCTTACCTTGAACCTGGGGCAAA
1 ATCTCTTACCCCGAGCATAGGACAGAGCACCATCAGCCAATCTCTTACCCCGAACCAGGGGCAAA
133512 TTGTAACCATTCG
66 TTGTAACCATTCG
* * * * *
133525 ATCTTTTACCCCGATCATAGGACAGATCACCTTCAGCCAATCTCTTACCCCGAGCCAGGGGCAAA
1 ATCTCTTACCCCGAGCATAGGACAGAGCACCATCAGCCAATCTCTTACCCCGAACCAGGGGCAAA
* *
133590 TTGTAACCATCCA
66 TTGTAACCATTCG
*
133603 ATATCTTACCCC
1 ATCTCTTACCCC
133615 CCCAAAAAAA
Statistics
Matches: 73, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.26
Consensus pattern (78 bp):
ATCTCTTACCCCGAGCATAGGACAGAGCACCATCAGCCAATCTCTTACCCCGAACCAGGGGCAAA
TTGTAACCATTCG
Found at i:133580 original size:117 final size:117
Alignment explanation
Indices: 133123--133584 Score: 333
Period size: 117 Copynumber: 4.0 Consensus size: 117
133113 TAAGATAGAT
* * * * * * * * * * *
133123 CACCATCAACCAATCTCTTACCCCGAGCTTAAGGTAGATTACAACCATCCGATCTTTTACCTCGA
1 CACCATCAGCCAATCTCTTACCTCGAACCTGAGGCAAATTGCAACCATCCGATCTCTTACCCCAA
* * * * *
133188 GC-TCGAGGCAGATCACTATCAACCAATCTCTTACCCCGAGCTTGGGGCAGAT
66 GCAT-GAGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGAG
* * * * * * ** * * * * *
133240 TA-CAGTCACCCAATCTCTTACCCCGAGCTTGAGGCAGATCACCATCACCCAATCTCTTATCCCA
1 CACCA-TCAGCCAATCTCTTACCTCGAACCTGAGGCAAATTGCAACCATCCGATCTCTTACCCCA
* * * * * * * * * * * *
133304 AGCCTGGGGTAGATTGTAGC-T-ATCCGATTTCTTACCCCGAGCTTGGGGTAGAT
65 AGCATGAGGCAGA-T-CACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGAG
* * * *
133357 CACCATCAGCCAATCTCTTACCTCGAGCCTGAGGCAGATTGCAGCTATCCGATCTCTTACCCCAA
1 CACCATCAGCCAATCTCTTACCTCGAACCTGAGGCAAATTGCAACCATCCGATCTCTTACCCCAA
*
133422 GCATGAGGCAGATCACCATCAGCCAATCTCTTACCTCGAGCCTAGGGCAGAG
66 GCATGAGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGAG
* * * * * * * *
133474 CATCATCAGTCAATCTCTTACCTTGAACCTGGGGCAAATTGTAACCATTCGATCTTTTACCCCGA
1 CACCATCAGCCAATCTCTTACCTCGAACCTGAGGCAAATTGCAACCATCCGATCTCTTACCCCAA
* *
133539 TCAT-AGGACAGATCACCTTCAGCCAATCTCTTACCCCGAGCC-AGGG
66 GCATGAGG-CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGG
133585 GCAAATTGTA
Statistics
Matches: 274, Mismatches: 63, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
115 2 0.01
116 11 0.04
117 255 0.93
118 5 0.02
119 1 0.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (117 bp):
CACCATCAGCCAATCTCTTACCTCGAACCTGAGGCAAATTGCAACCATCCGATCTCTTACCCCAA
GCATGAGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGAG
Found at i:136120 original size:6 final size:6
Alignment explanation
Indices: 136086--136153 Score: 59
Period size: 6 Copynumber: 11.5 Consensus size: 6
136076 TAATAGGGAT
* * * *
136086 TTTCAA TTTACAA -TTC-A TATCAC TTTCAA TTTCAA TTTCAC TTTCAC
1 TTTCAA TTT-CAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA
* *
136133 TTTCAC TTTCAC TTTCAA TTT
1 TTTCAA TTTCAA TTTCAA TTT
136154 TGATCACAAC
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
4 1 0.02
5 3 0.06
6 46 0.87
7 3 0.06
ACGTcount: A:0.26, C:0.24, G:0.00, T:0.50
Consensus pattern (6 bp):
TTTCAA
Found at i:136128 original size:18 final size:18
Alignment explanation
Indices: 136105--136153 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
136095 ACAATTCATA
136105 TCACTTTCAATTTCAATT
1 TCACTTTCAATTTCAATT
* *
136123 TCACTTTCACTTTCACTT
1 TCACTTTCAATTTCAATT
136141 TCACTTTCAATTT
1 TCACTTTCAATTT
136154 TGATCACAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.22, C:0.27, G:0.00, T:0.51
Consensus pattern (18 bp):
TCACTTTCAATTTCAATT
Found at i:136130 original size:12 final size:12
Alignment explanation
Indices: 136105--136153 Score: 71
Period size: 12 Copynumber: 4.1 Consensus size: 12
136095 ACAATTCATA
136105 TCACTTTCAATT
1 TCACTTTCAATT
* *
136117 TCAATTTCACTT
1 TCACTTTCAATT
*
136129 TCACTTTCACTT
1 TCACTTTCAATT
136141 TCACTTTCAATT
1 TCACTTTCAATT
136153 T
1 T
136154 TGATCACAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.22, C:0.27, G:0.00, T:0.51
Consensus pattern (12 bp):
TCACTTTCAATT
Found at i:138782 original size:30 final size:29
Alignment explanation
Indices: 138729--139467 Score: 468
Period size: 30 Copynumber: 24.9 Consensus size: 29
138719 GAATTTCTTA
*
138729 AAAATCACA-TTTAACCCCTAAACTTTTT
1 AAAATCACATTTTAACCCCCAAACTTTTT
* **
138757 AAAAATCACATTTTGACCCCCAAACTTTCCA
1 -AAAATCACATTTTAACCCCCAAACTTT-TT
* *** *
138788 AAAATCACATTTTGACGATCAAACTTCTTA
1 AAAATCACATTTTAACCCCCAAACTT-TTT
**
138818 AAAATCAC--TTTAACCCTAAAACCTTTTT
1 AAAATCACATTTTAACCCCCAAA-CTTTTT
* * **
138846 AATATTACATTTTAACCCTAAAACTTTTCT
1 AAAATCACATTTTAACCCCCAAACTTTT-T
* *
138876 AAAATCACATTTTAACCCCCGAACTTTTCC
1 AAAATCACATTTTAACCCCCAAACTTTT-T
** * * **
138906 AAAATCGTATTTTCACCCTCAAACTTTACC
1 AAAATCACATTTTAACCCCCAAACTTT-TT
* ** * * *
138936 AAAATCACATTTTGACCATCGAACTTCCTA
1 AAAATCACATTTTAACCCCCAAACTT-TTT
*
138966 AAAATCA-ATTTTAACCCCCAAACATTTCT
1 AAAATCACATTTTAACCCCCAAAC-TTTTT
* *
138995 AAAATCATATTTTAA-CCCTAACACTTTTCT
1 AAAATCACATTTTAACCCCCAA-ACTTTT-T
* ** *
139025 AAAATTACATTTTAACCCTAAAACTTTTCC
1 AAAATCACATTTTAACCCCCAAACTTTT-T
* * * **
139055 AAAATCATATTTTATCCCTCAAACTTCTCC
1 AAAATCACATTTTAACCCCCAAACTT-TTT
* * ** * *
139085 AAAATCATATTTTAACCACTGAACTTCCTA
1 AAAATCACATTTTAACCCCCAAACTT-TTT
* *
139115 AAAATCACATTTTAACCCCTAAACCTTTCT
1 AAAATCACATTTTAACCCCCAAA-CTTTTT
**
139145 AAAATCACATTTTAACCCTAAAACTTTTCT
1 AAAATCACATTTTAACCCCCAAACTTTT-T
* *
139175 AAAATCACATTTTAACCTCCAAACTTTCTA
1 AAAATCACATTTTAACCCCCAAACTTT-TT
* * *
139205 AAAACCACATTTTAACCCTCAAACCTTTCT
1 AAAATCACATTTTAACCCCCAAA-CTTTTT
* * ***
139235 AAAATCATATTTTGACCTTAAAACTTTTCT
1 AAAATCACATTTTAACCCCCAAACTTTT-T
* *
139265 AAAATCACATTTTAACCCTCAAACTTTTCC
1 AAAATCACATTTTAACCCCCAAACTTTT-T
* * * * *
139295 AAAATTATATTTTCACCCCTAAACTTCTCT
1 AAAATCACATTTTAACCCCCAAACTT-TTT
* * *
139325 AAAATCACATTTTAACCACCAAACCTTCTC
1 AAAATCACATTTTAACCCCCAAA-CTTTTT
* * *
139355 AAAATCACATTTTAACTCTCAAACTTCTCT
1 AAAATCACATTTTAACCCCCAAACTT-TTT
* * *
139385 AAAATCACCTTTTAA--CCTAAACTTTCTC
1 AAAATCACATTTTAACCCCCAAACTTT-TT
* *
139413 AAAATTACATTTTTACCCCCTAAACTTTTT
1 AAAATCACATTTTAACCCCC-AAACTTTTT
*
139443 CAAAATTACATTTTAA-CCCCAAACT
1 -AAAATCACATTTTAACCCCCAAACT
139468 CTCCAAAACT
Statistics
Matches: 559, Mismatches: 123, Indels: 56
0.76 0.17 0.08
Matches are distributed among these distances:
27 1 0.00
28 36 0.06
29 60 0.11
30 423 0.76
31 39 0.07
ACGTcount: A:0.37, C:0.27, G:0.01, T:0.35
Consensus pattern (29 bp):
AAAATCACATTTTAACCCCCAAACTTTTT
Found at i:138821 original size:60 final size:59
Alignment explanation
Indices: 138729--139467 Score: 525
Period size: 60 Copynumber: 12.4 Consensus size: 59
138719 GAATTTCTTA
* *
138729 AAAATCACA-TTTAACCC-CTAAACTTTTTAAAAATCACATTTTGACCCCCAAACTTTCCA
1 AAAATCACATTTTAACCCTC-AAAC-TTTTAAAAATCACATTTTAACCCCCAAACTTTCCT
* ** ** *
138788 AAAATCACATTTTGACGATCAAACTTCTTAAAAATCAC--TTTAACCCTAAAACCTTT-TT
1 AAAATCACATTTTAACCCTCAAACTT-TTAAAAATCACATTTTAACCCCCAAA-CTTTCCT
* * * * *
138846 AATATTACATTTTAACCCTAAAACTTTTCTAAAATCACATTTTAACCCCCGAACTTTTCC-
1 AAAATCACATTTTAACCCTCAAACTTTT-AAAAATCACATTTTAACCCCCAAAC-TTTCCT
** * * ** *
138906 AAAATCGTATTTTCACCCTCAAAC-TTTACCAAAATCACATTTTGACCATCGAAC-TTCCT
1 AAAATCACATTTTAACCCTCAAACTTTTA--AAAATCACATTTTAACCCCCAAACTTTCCT
* * * *
138965 AAAAATCA-ATTTTAACCCCCAAACATTTCT-AAAATCATATTTTAA-CCCTAACACTTTTCT
1 -AAAATCACATTTTAACCCTCAAAC-TTT-TAAAAATCACATTTTAACCCCCAA-ACTTTCCT
* * * * * *
139025 AAAATTACATTTTAACCCTAAAACTTTTCCAAAATCATATTTTATCCCTCAAACTTCTCC-
1 AAAATCACATTTTAACCCTCAAACTTTT-AAAAATCACATTTTAACCCCCAAACTT-TCCT
* * * *
139085 AAAATCATATTTTAACCACT-GAACTTCCTAAAAATCACATTTTAACCCCTAAACCTTT-CT
1 AAAATCACATTTTAACC-CTCAAACTT-TTAAAAATCACATTTTAACCCCCAAA-CTTTCCT
* * *
139145 AAAATCACATTTTAACCCTAAAACTTTTCTAAAATCACATTTTAACCTCCAAACTTT-CT
1 AAAATCACATTTTAACCCTCAAACTTTT-AAAAATCACATTTTAACCCCCAAACTTTCCT
* * * *** *
139204 AAAAACCACATTTTAACCCTCAAACCTTTCT-AAAATCATATTTTGACCTTAAAACTTTTCT
1 -AAAATCACATTTTAACCCTCAAA-CTTT-TAAAAATCACATTTTAACCCCCAAACTTTCCT
* * * * *
139265 AAAATCACATTTTAACCCTCAAACTTTTCCAAAATTATATTTTCACCCCTAAAC-TTCTCT
1 AAAATCACATTTTAACCCTCAAACTTTT-AAAAATCACATTTTAACCCCCAAACTTTC-CT
* * * *
139325 AAAATCACATTTTAACCAC-CAAACCTTCTCAAAATCACATTTTAACTCTCAAAC-TTCTCT
1 AAAATCACATTTTAACC-CTCAAA-CTTTTAAAAATCACATTTTAACCCCCAAACTTTC-CT
* * * * *
139385 AAAATCACCTTTTAA-CCT-AAACTTTCTCAAAATTACATTTTTACCCCCTAAACTTT-TT
1 AAAATCACATTTTAACCCTCAAACTTT-TAAAAATCACATTTTAACCCCC-AAACTTTCCT
*
139443 CAAAATTACATTTTAACCC-CAAACT
1 -AAAATCACATTTTAACCCTCAAACT
139468 CTCCAAAACT
Statistics
Matches: 545, Mismatches: 90, Indels: 89
0.75 0.12 0.12
Matches are distributed among these distances:
57 5 0.01
58 69 0.13
59 91 0.17
60 352 0.65
61 26 0.05
62 2 0.00
ACGTcount: A:0.37, C:0.27, G:0.01, T:0.35
Consensus pattern (59 bp):
AAAATCACATTTTAACCCTCAAACTTTTAAAAATCACATTTTAACCCCCAAACTTTCCT
Found at i:138972 original size:90 final size:87
Alignment explanation
Indices: 138729--139475 Score: 532
Period size: 90 Copynumber: 8.4 Consensus size: 87
138719 GAATTTCTTA
** * * *
138729 AAAATCACA-TTTAACCC-CTAAACTTTTTAAAAATCACATTTTGACCCCCAAACTTTCCAAAAA
1 AAAATCACATTTTAACCCTC-AAAC-TTTCCAAAATCACATTTT-AACCTCAAAC-TTCCTAAAA
* *** *
138792 TCACATTTTGACGATCAAACTTCTT-A
62 TCACATTTTAACCCCCAAACTT-TTCC
* ** * * * *
138818 AAAATCAC--TTTAACCCTAAAACCTTTTTAATATTACATTTTAACCCTAAAACTTTTCTAAAAT
1 AAAATCACATTTTAACCCTCAAA-CTTTCCAAAATCACATTTTAA-CCTCAAAC-TTCCTAAAAT
*
138881 CACATTTTAACCCCCGAACTTTTCC
63 CACATTTTAACCCCCAAACTTTTCC
** * * *
138906 AAAATCGTATTTTCACCCTCAAACTTTACCAAAATCACATTTTGACCATCGAACTTCCTAAAAAT
1 AAAATCACATTTTAACCCTCAAACTTT-CCAAAATCACATTTTAACC-TCAAACTTCCT-AAAAT
* *
138971 CA-ATTTTAACCCCCAAACATTTCT
63 CACATTTTAACCCCCAAACTTTTCC
* * * *
138995 AAAATCATATTTTAACCCT-AACACTTTTCTAAAATTACATTTTAACCCTAAAACTTTTCC-AAA
1 AAAATCACATTTTAACCCTCAA-AC-TTTCCAAAATCACATTTTAA-CCTCAAAC--TTCCTAAA
* * * *
139058 ATCATATTTTATCCCTCAAACTTCTCC
61 ATCACATTTTAACCCCCAAACTTTTCC
* * * *
139085 AAAATCATATTTTAACCACT-GAAC-TTCCTAAAAATCACATTTTAACCCCTAAACCTTTCTAAA
1 AAAATCACATTTTAACC-CTCAAACTTTCC--AAAATCACATTTTAACCTC-AAA-CTTCCTAAA
** *
139148 ATCACATTTTAACCCTAAAACTTTTCT
61 ATCACATTTTAACCCCCAAACTTTTCC
* * *
139175 AAAATCACATTTTAA-CCTCCAAACTTTCTAAAAACCACATTTTAACCCTCAAACCTTTCTAAAA
1 AAAATCACATTTTAACCCT-CAAACTTTC-CAAAATCACATTTTAA-CCTCAAA-CTTCCTAAAA
* * *** *
139239 TCATATTTTGACCTTAAAACTTTTCT
62 TCACATTTTAACCCCCAAACTTTTCC
* * * *
139265 AAAATCACATTTTAACCCTCAAACTTTTCCAAAATTATATTTTCACCCCTAAACTTCTCTAAAAT
1 AAAATCACATTTTAACCCTCAAAC-TTTCCAAAATCACATTTTAACCTC-AAACTTC-CTAAAAT
* *
139330 CACATTTTAACCACCAAAC-CTTCTC
63 CACATTTTAACCCCCAAACTTTTC-C
* * * * *
139355 AAAATCACATTTTAACTCTCAAACTTCTCTAAAATCACCTTTTAACCT-AAACTTTCTCAAAATT
1 AAAATCACATTTTAACCCTCAAACTT-TCCAAAATCACATTTTAACCTCAAACTTCCT-AAAATC
* *
139419 ACATTTTTACCCCCTAAACTTTTTC
64 ACATTTTAACCCCC-AAACTTTTCC
* *
139444 AAAATTACATTTTAACCC-CAAACTCTCCAAAA
1 AAAATCACATTTTAACCCTCAAACTTTCCAAAA
139476 CTTCATTTTC
Statistics
Matches: 531, Mismatches: 92, Indels: 72
0.76 0.13 0.10
Matches are distributed among these distances:
87 11 0.02
88 99 0.19
89 120 0.23
90 280 0.53
91 21 0.04
ACGTcount: A:0.38, C:0.27, G:0.01, T:0.34
Consensus pattern (87 bp):
AAAATCACATTTTAACCCTCAAACTTTCCAAAATCACATTTTAACCTCAAACTTCCTAAAATCAC
ATTTTAACCCCCAAACTTTTCC
Found at i:141641 original size:139 final size:140
Alignment explanation
Indices: 141493--141763 Score: 318
Period size: 139 Copynumber: 1.9 Consensus size: 140
141483 AACTAAGAAT
* * * * *
141493 AATTGAAAATATAAATATATATAATTTAAAAATTATTATTACAAACAAT-AAAAAGTACCTTAAA
1 AATTGAAAATATAAACATATATAATATAAAAATTATCATAACAAACAATAAAAAAATACCTTAAA
* * * *
141557 ACTATTACAT-TTTTTTCCCTAGAA-TTCCAACACAAACA-ATTTTTTCCTCCCCAAATTCCAAC
66 ACTA-T-CATATTTTCTCCCTAAAACTT-CAACACAAACATA-CTTTTCCTCCCAAAATTCCAAC
141619 AACCAACTACAATA
127 AACCAACTACAATA
* * * *
141633 AATT-AAAATATAAACATATATAGTATACAAATTATCATAACAAATAATAAAAAAATATCTTAAA
1 AATTGAAAATATAAACATATATAATATAAAAATTATCATAACAAACAATAAAAAAATACCTTAAA
* * **
141697 ATTATCATATTTTCTCCCTAAAACTTCAATACAAACATACTTTTCCTCTTAAAATTCCAACAACC
66 ACTATCATATTTTCTCCCTAAAACTTCAACACAAACATACTTTTCCTCCCAAAATTCCAACAACC
141762 AA
131 AA
141764 GATAAAAAAT
Statistics
Matches: 110, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
138 3 0.03
139 84 0.76
140 23 0.21
ACGTcount: A:0.48, C:0.18, G:0.01, T:0.32
Consensus pattern (140 bp):
AATTGAAAATATAAACATATATAATATAAAAATTATCATAACAAACAATAAAAAAATACCTTAAA
ACTATCATATTTTCTCCCTAAAACTTCAACACAAACATACTTTTCCTCCCAAAATTCCAACAACC
AACTACAATA
Found at i:157883 original size:53 final size:52
Alignment explanation
Indices: 157803--157941 Score: 202
Period size: 53 Copynumber: 2.8 Consensus size: 52
157793 GTAGATTAAT
157803 TTTGGCCTTTGATCTTCTGCATTCCATACACTAAAATTAGATTAATTTTGGCC
1 TTTGGCCTTTGATCTTCTGCATTCCATACACTAAAATTAGATTAATTTTGG-C
157856 TTTGGCCTTTGATCTTCTGCATTCCATACACT-AAATTAGATTAATTTTGGC
1 TTTGGCCTTTGATCTTCTGCATTCCATACACTAAAATTAGATTAATTTTGGC
* *
157907 --T----TTTCATCTTCTGCATTCCATACACTAAAACTAGA
1 TTTGGCCTTTGATCTTCTGCATTCCATACACTAAAATTAGA
157942 CGAAACTAAG
Statistics
Matches: 83, Mismatches: 2, Indels: 9
0.88 0.02 0.10
Matches are distributed among these distances:
45 24 0.29
46 7 0.08
49 1 0.01
51 1 0.01
52 18 0.22
53 32 0.39
ACGTcount: A:0.26, C:0.22, G:0.12, T:0.41
Consensus pattern (52 bp):
TTTGGCCTTTGATCTTCTGCATTCCATACACTAAAATTAGATTAATTTTGGC
Found at i:161692 original size:2 final size:2
Alignment explanation
Indices: 161685--161728 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
161675 GTCGTGCGAT
*
161685 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG CG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
161727 AG
1 AG
161729 GCAGAGTGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.02, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:170209 original size:28 final size:28
Alignment explanation
Indices: 170147--170218 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 28
170137 AAATTTTAAA
170147 TTAATAATAATAAAATTATATTTTAACCC
1 TTAA-AATAATAAAATTATATTTTAACCC
* *
170176 TCAAAATAATAAAATTA-ATTTTAACTCT
1 TTAAAATAATAAAATTATATTTTAAC-CC
*
170204 TTAAAAATTATAAAA
1 TT-AAAATAATAAAA
170219 CATGCTATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
27 8 0.22
28 15 0.41
29 14 0.38
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (28 bp):
TTAAAATAATAAAATTATATTTTAACCC
Found at i:171697 original size:11 final size:11
Alignment explanation
Indices: 171681--171724 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
171671 AATTGTATAT
171681 AATTATAAAAA
1 AATTATAAAAA
*
171692 AATTATTAAAA
1 AATTATAAAAA
* *
171703 AGTTATTAAAA
1 AATTATAAAAA
171714 AATTAATAAAA
1 AATT-ATAAAA
171725 TATAACTGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
11 23 0.82
12 5 0.18
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (11 bp):
AATTATAAAAA
Found at i:171708 original size:22 final size:22
Alignment explanation
Indices: 171683--171724 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
171673 TTGTATATAA
*
171683 TTATAAAAAAATTATTAAAAAG
1 TTATAAAAAAATTAATAAAAAG
*
171705 TTATTAAAAAATTAATAAAA
1 TTATAAAAAAATTAATAAAA
171725 TATAACTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
TTATAAAAAAATTAATAAAAAG
Found at i:171993 original size:10 final size:10
Alignment explanation
Indices: 171975--172036 Score: 58
Period size: 10 Copynumber: 6.4 Consensus size: 10
171965 TATGTCATTG
*
171975 TTTTAAATAA
1 TTTTTAATAA
171985 TTTTTAAT-A
1 TTTTTAATAA
*
171994 CTTTTAAT--
1 TTTTTAATAA
*
172002 TTTTTTATAA
1 TTTTTAATAA
*
172012 TTCTTAATAA
1 TTTTTAATAA
172022 TTTTTAAATAA
1 TTTTT-AATAA
172033 TTTT
1 TTTT
172037 CTATATCTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
8 6 0.14
9 8 0.19
10 19 0.45
11 9 0.21
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:172000 original size:20 final size:19
Alignment explanation
Indices: 171975--172036 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 19
171965 TATGTCATTG
*
171975 TTTTAAATAATTTTTAATAC
1 TTTT-AATAATTTTTAATAA
*
171995 TTTTAAT--TTTTTTATAA
1 TTTTAATAATTTTTAATAA
172012 TTCTTAATAATTTTTAAATAA
1 TT-TTAATAATTTTT-AATAA
172033 TTTT
1 TTTT
172037 CTATATCTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
17 10 0.29
18 5 0.14
19 3 0.09
20 11 0.31
21 6 0.17
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTAATAATTTTTAATAA
Found at i:175041 original size:22 final size:24
Alignment explanation
Indices: 175011--175099 Score: 69
Period size: 23 Copynumber: 3.8 Consensus size: 24
175001 ATATGTAAAA
*
175011 TTATATTTATATA-AAAAAATAAT
1 TTATATTTAAATATAAAAAATAAT
* *
175034 TTAT-TTTAAATATAAAATATTAT
1 TTATATTTAAATATAAAAAATAAT
* * *
175057 TTATATATTAAAAATTAAAATTAA-
1 TTATAT-TTAAATATAAAAAATAAT
*
175081 TTATAAATTAAATA-AAAAA
1 TTAT-ATTTAAATATAAAAA
175100 TTTAATCCGA
Statistics
Matches: 51, Mismatches: 11, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
22 7 0.14
23 20 0.39
24 11 0.22
25 13 0.25
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TTATATTTAAATATAAAAAATAAT
Found at i:175084 original size:24 final size:24
Alignment explanation
Indices: 175024--175101 Score: 70
Period size: 24 Copynumber: 3.3 Consensus size: 24
175014 TATTTATATA
* * *
175024 AAAAAATAATT-TATTTTAAATAT
1 AAAAATTAATTATATATTAAAAAT
*
175047 AAAATATTATTTATATATTAAAAAT
1 AAAA-ATTAATTATATATTAAAAAT
* * *
175072 TAAAATTAATTATAAATTAAATA-
1 AAAAATTAATTATATATTAAAAAT
175095 AAAAATT
1 AAAAATT
175102 TAATCCGAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
23 10 0.23
24 21 0.48
25 13 0.30
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
AAAAATTAATTATATATTAAAAAT
Found at i:175243 original size:20 final size:20
Alignment explanation
Indices: 175207--175245 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
175197 TTATTTAATT
175207 TTTAAAATTCTATATATTTA
1 TTTAAAATTCTATATATTTA
*
175227 TTTAATATT-TATAATATTT
1 TTTAAAATTCTAT-ATATTT
175246 TTACCTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTAAAATTCTATATATTTA
Found at i:176048 original size:29 final size:31
Alignment explanation
Indices: 175979--176049 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
175969 ATAAATATAC
*
175979 ATTTAGGTATTTGAACTTGATTTTAAGATTCA
1 ATTTAGGTATTTAAACTTGATTTT-AGATTCA
* *
176011 ATTTA-GTATTTAAAGTTTATTTT-GATTCA
1 ATTTAGGTATTTAAACTTGATTTTAGATTCA
176040 A-TTAGGTATT
1 ATTTAGGTATT
176050 CGAACTTAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 3 0.09
29 12 0.34
31 15 0.43
32 5 0.14
ACGTcount: A:0.31, C:0.04, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTTAGGTATTTAAACTTGATTTTAGATTCA
Found at i:179240 original size:26 final size:26
Alignment explanation
Indices: 179088--179246 Score: 194
Period size: 26 Copynumber: 6.1 Consensus size: 26
179078 CGCTAATTGT
*
179088 TCACCGGCTCAAAGCTTGCTATTTAA
1 TCACCGGCTCAAAGCCTGCTATTTAA
* *
179114 TCACCGGCTCGAAGCCTGCTATTTGA
1 TCACCGGCTCAAAGCCTGCTATTTAA
* * *
179140 TCACTGGCTCAAGGCCTACTATTTAA
1 TCACCGGCTCAAAGCCTGCTATTTAA
* *
179166 T-ATCTGGCTCAAAGCCTACTATTTAA
1 TCA-CCGGCTCAAAGCCTGCTATTTAA
* **
179192 TCACCGGCTCAAGGCCTGCTATACAA
1 TCACCGGCTCAAAGCCTGCTATTTAA
*
179218 TCACCGGCTCAAAGCCTGCTATATAA
1 TCACCGGCTCAAAGCCTGCTATTTAA
179244 TCA
1 TCA
179247 TCGCTTTTCT
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
25 1 0.01
26 113 0.98
27 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (26 bp):
TCACCGGCTCAAAGCCTGCTATTTAA
Found at i:180981 original size:16 final size:16
Alignment explanation
Indices: 180962--180995 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
180952 ATCCGCTCTG
180962 ATACTCAAAAAAAAGT
1 ATACTCAAAAAAAAGT
180978 ATACTCAAAAAAAAGT
1 ATACTCAAAAAAAAGT
180994 AT
1 AT
180996 CTCCCAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.21
Consensus pattern (16 bp):
ATACTCAAAAAAAAGT
Found at i:187439 original size:13 final size:13
Alignment explanation
Indices: 187421--187445 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
187411 TGCTCACCTC
187421 TATAATATAATAA
1 TATAATATAATAA
187434 TATAATATAATA
1 TATAATATAATA
187446 TAGTATAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TATAATATAATAA
Found at i:189178 original size:21 final size:21
Alignment explanation
Indices: 189148--189201 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
189138 TTAACTTATA
* *
189148 AACTAGTTGAACTGGTCGGTC-
1 AACTAATTGAACGGGT-GGTCG
*
189169 AACTTATTGAACGGGTGGTCG
1 AACTAATTGAACGGGTGGTCG
189190 AACTAATTGAAC
1 AACTAATTGAAC
189202 AATTTTTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 4 0.14
21 24 0.86
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (21 bp):
AACTAATTGAACGGGTGGTCG
Found at i:195259 original size:36 final size:36
Alignment explanation
Indices: 195219--195291 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
195209 TACGCCTTCT
195219 TCTGCTAATACAGTTGCTAGGACCTCCTTTTATGGC
1 TCTGCTAATACAGTTGCTAGGACCTCCTTTTATGGC
195255 TCTGCTAATACAGTTGCTAGGACCTCCTTTTATGGC
1 TCTGCTAATACAGTTGCTAGGACCTCCTTTTATGGC
195291 T
1 T
195292 TTAGATCTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (36 bp):
TCTGCTAATACAGTTGCTAGGACCTCCTTTTATGGC
Found at i:199433 original size:6 final size:6
Alignment explanation
Indices: 199422--199456 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
199412 AAAAAAGGAA
199422 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGA
199457 AGAGAAGTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.51, C:0.00, G:0.34, T:0.14
Consensus pattern (6 bp):
GAAGAT
Found at i:202299 original size:3 final size:3
Alignment explanation
Indices: 202291--202334 Score: 72
Period size: 3 Copynumber: 14.7 Consensus size: 3
202281 GGAGAACTTA
202291 GAT GAT GAT GAT GAT GAT -ATT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GA-T GAT GAT GAT GAT GAT GAT GAT GA
202335 AGCTCCAGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 1 0.03
3 37 0.95
4 1 0.03
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
GAT
Found at i:219444 original size:9 final size:9
Alignment explanation
Indices: 219430--219539 Score: 64
Period size: 9 Copynumber: 12.0 Consensus size: 9
219420 TTTTAGTACG
219430 ATAATTTTT
1 ATAATTTTT
219439 ATAATTTTTTT
1 ATAA--TTTTT
* *
219450 CTAATTTTCA
1 ATAATTTT-T
**
219460 ATAAAATTT
1 ATAATTTTT
219469 A-AATTTTTT
1 ATAA-TTTTT
*
219478 ATAGTTTTT
1 ATAATTTTT
* *
219487 ATTAAATTTA
1 A-TAATTTTT
219497 ATAATTTTT
1 ATAATTTTT
219506 ATAATTTTT
1 ATAATTTTT
219515 AT--TTTTT
1 ATAATTTTT
* *
219522 TTATTTTTT
1 ATAATTTTT
*
219531 ATCATTTTT
1 ATAATTTTT
219540 TGTCATATAT
Statistics
Matches: 75, Mismatches: 18, Indels: 16
0.69 0.17 0.15
Matches are distributed among these distances:
7 6 0.08
8 2 0.03
9 47 0.63
10 12 0.16
11 8 0.11
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (9 bp):
ATAATTTTT
Found at i:219493 original size:27 final size:28
Alignment explanation
Indices: 219445--219517 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
219435 TTTTATAATT
* * * *
219445 TTTTTCTAATTTTCAATAAAATTTAA-AT
1 TTTTTATAATTTT-TATTAAATTTAATAA
*
219473 TTTTTATAGTTTTTATTAAATTTAATAA
1 TTTTTATAATTTTTATTAAATTTAATAA
219501 TTTTTATAATTTTTATT
1 TTTTTATAATTTTTATT
219518 TTTTTTATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 10 0.26
28 28 0.74
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (28 bp):
TTTTTATAATTTTTATTAAATTTAATAA
Found at i:219515 original size:37 final size:38
Alignment explanation
Indices: 219430--219526 Score: 99
Period size: 37 Copynumber: 2.6 Consensus size: 38
219420 TTTTAGTACG
* *
219430 ATAATTTTTATAATTTTTTTCTAATTTTCAATAAAATTT
1 ATAATTTTTATAATTTTTAT-TAAATTTCAATAAAATTT
* **
219469 A-AATTTTTTATAGTTTTTATTAAATTT-AATAATTTTT
1 ATAA-TTTTTATAATTTTTATTAAATTTCAATAAAATTT
**
219506 ATAATTTTTATTTTTTTTATT
1 ATAATTTTTATAATTTTTATT
219527 TTTTATCATT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
37 24 0.49
38 10 0.20
39 15 0.31
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (38 bp):
ATAATTTTTATAATTTTTATTAAATTTCAATAAAATTT
Found at i:219524 original size:28 final size:25
Alignment explanation
Indices: 219444--219539 Score: 66
Period size: 28 Copynumber: 3.6 Consensus size: 25
219434 TTTTTATAAT
* * *
219444 TTTTTTCTAATTTTCAATAAAATTTAAA
1 TTTTTTATAATTTT-TATTAAATTT--A
*
219472 TTTTTTATAGTTTTTATTAAATTTAA
1 TTTTTTATAATTTTTATTAAATTT-A
***
219498 TAATTTTTATAATTTTTATTTTTTTTA
1 T--TTTTTATAATTTTTATTAAATTTA
*
219525 TTTTTTATCATTTTT
1 TTTTTTATAATTTTT
219540 TGTCATATAT
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
25 13 0.23
26 3 0.05
27 10 0.18
28 31 0.54
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (25 bp):
TTTTTTATAATTTTTATTAAATTTA
Found at i:219762 original size:90 final size:89
Alignment explanation
Indices: 219612--219830 Score: 216
Period size: 89 Copynumber: 2.5 Consensus size: 89
219602 GTTTAAGTAT
* * ****
219612 CCAATTGAGTG--CAAAAAAT-TAGGGGCTTAATTGTTTTTTTTTTTAAGTTTAAGGGCCTTTTT
1 CCAATTGAGTGAAAAAAAAATGTAGAGGCTTAATTGTTTTTTTGAAAAAGTTTAAGGGCC-TTTT
219674 TAATACATTTT-GAAAGTTCAAATAC
65 TAATACATTTTGGAAA-TTCAAATAC
* *
219699 CCAATTGAGTGAAAAAAAAATGTAGAGGCTTAATTGCTTTTTTGAAAAAGTTTTAGGAG-CTTTT
1 CCAATTGAGTGAAAAAAAAATGTAGAGGCTTAATTGTTTTTTTGAAAAAGTTTAAGG-GCCTTTT
* * * *
219763 TGATGCATTTTGGTAATTCAAGTAC
65 TAATACATTTTGGAAATTCAAATAC
* * **
219788 CCAATTGAATGCAAAAAGAAA-GCGGAGGCTTAATTGTTTTTTT
1 CCAATTGAGTG-AAAAAAAAATGTAGAGGCTTAATTGTTTTTTT
219831 TTTTTAGATT
Statistics
Matches: 109, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
87 11 0.10
89 57 0.52
90 40 0.37
91 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (89 bp):
CCAATTGAGTGAAAAAAAAATGTAGAGGCTTAATTGTTTTTTTGAAAAAGTTTAAGGGCCTTTTT
AATACATTTTGGAAATTCAAATAC
Found at i:219848 original size:89 final size:88
Alignment explanation
Indices: 219635--219853 Score: 217
Period size: 89 Copynumber: 2.4 Consensus size: 88
219625 AAAAATTAGG
*
219635 GGCTTAATTGTTTTTTTTTTTAAGTTTAAGGGCCTTTTTTAATACATTTTGAAAGTTCAAATACC
1 GGCTTAATTGTTTTTTTTTTTAAGTTTAAGAG-C-TTTTTAATACATTTTGAAAGTTCAAATACC
* *
219700 CAATTGAGTGAAAAAAAAATGTAGA
64 CAATTGAATGAAAAAAAAATGCAGA
* **** * * * * *
219725 GGCTTAATTGCTTTTTTGAAAAAGTTTTAGGAGCTTTTTGATGCATTTTGGTAA-TTCAAGTACC
1 GGCTTAATTGTTTTTTTTTTTAAG-TTTAAGAGCTTTTTAATACATTTT-GAAAGTTCAAATACC
* *
219789 CAATTGAATGCAAAAAGAAA-GCGGA
64 CAATTGAATG-AAAAAAAAATGCAGA
* *
219814 GGCTTAATTGTTTTTTTTTTTTAGATTTGAGAGCTTTTTA
1 GGCTTAATTGTTTTTTTTTTTAAG-TTTAAGAGCTTTTTA
219854 CACCGTCAAA
Statistics
Matches: 101, Mismatches: 25, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
89 64 0.63
90 31 0.31
91 6 0.06
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (88 bp):
GGCTTAATTGTTTTTTTTTTTAAGTTTAAGAGCTTTTTAATACATTTTGAAAGTTCAAATACCCA
ATTGAATGAAAAAAAAATGCAGA
Found at i:222872 original size:29 final size:29
Alignment explanation
Indices: 222812--222916 Score: 96
Period size: 29 Copynumber: 3.8 Consensus size: 29
222802 TTTAAATTTG
* * *
222812 TTTTATTA-ATTTTATAA-ATTTATTAGA
1 TTTTATTATAATTTATAATATTTATAAGT
* *
222839 ATTTATTATATTTTTATAATATTTA-AAGT
1 TTTTATTATA-ATTTATAATATTTATAAGT
*
222868 TTTTATTATAATTTATAATTTTTATAAGT
1 TTTTATTATAATTTATAATATTTATAAGT
*
222897 TTTT-TT-CAATTT-TAATATTT
1 TTTTATTATAATTTATAATATTT
222917 TTAAACATTT
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
26 7 0.11
27 12 0.18
28 15 0.23
29 27 0.41
30 5 0.08
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (29 bp):
TTTTATTATAATTTATAATATTTATAAGT
Found at i:222881 original size:19 final size:18
Alignment explanation
Indices: 222812--222894 Score: 64
Period size: 19 Copynumber: 4.4 Consensus size: 18
222802 TTTAAATTTG
222812 TTTTATTAAT-TTTATAAAT
1 TTTTA-TAATATTTAT-AAT
* *
222831 TTATTAGAATTTATTAT-AT
1 TT-TTATAATAT-TTATAAT
222850 TTTTATAATATTTA-AAGT
1 TTTTATAATATTTATAA-T
*
222868 TTTTATTATAATTTATAAT
1 TTTTATAAT-ATTTATAAT
222887 TTTTATAA
1 TTTTATAA
222895 GTTTTTTTCA
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
17 4 0.08
18 16 0.31
19 22 0.42
20 6 0.12
21 4 0.08
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TTTTATAATATTTATAAT
Found at i:224090 original size:19 final size:18
Alignment explanation
Indices: 224048--224085 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
224038 ACTTTCTTTT
*
224048 TCTCTATCTTCTCTCATC
1 TCTCTTTCTTCTCTCATC
224066 TCTCTTTCTT-TCTCA-C
1 TCTCTTTCTTCTCTCATC
224082 TCTC
1 TCTC
224086 GTCTTATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 5 0.26
18 9 0.47
ACGTcount: A:0.08, C:0.39, G:0.00, T:0.53
Consensus pattern (18 bp):
TCTCTTTCTTCTCTCATC
Found at i:232897 original size:21 final size:21
Alignment explanation
Indices: 232870--232925 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
232860 AATAGTGCAG
232870 ACCTCTACCGATACAAGTGAC
1 ACCTCTACCGATACAAGTGAC
** *
232891 AGTTCTACCGACACAAGTGAC
1 ACCTCTACCGATACAAGTGAC
*
232912 TCCTCTACCGATAC
1 ACCTCTACCGATAC
232926 TACTCTTGAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.34, G:0.14, T:0.21
Consensus pattern (21 bp):
ACCTCTACCGATACAAGTGAC
Found at i:233728 original size:52 final size:52
Alignment explanation
Indices: 233623--233906 Score: 383
Period size: 52 Copynumber: 5.5 Consensus size: 52
233613 TATTTGATAT
* * * ** *
233623 TCACGATGACACAGAGTCATCGGTCCT-TTAATATGTAAAGAATTCATATAC
1 TCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATAC
* * *
233674 TCACGATGACGCATAGTCATCGAACCTCATAATCCGTAAATGATTCATATAC
1 TCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATAC
* * * * *
233726 TCAAGATGGCACATAGTCATCGGACCTCGTAAT-CGACAAAAGATTCATATAC
1 TCACGATGACACATAGTCATCGGACCTCATAATCCG-TAAAGGATTCATATAC
* *
233778 TCACGATGACACATAGTCATCGGACCTCATAACCCGTAAAGGAATCATATAC
1 TCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATAC
* *
233830 TCATGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATAG
1 TCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATAC
233882 TCACGATGACACATAGTCATCGGAC
1 TCACGATGACACATAGTCATCGGAC
233907 TTATTTCATT
Statistics
Matches: 202, Mismatches: 28, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
51 25 0.12
52 175 0.87
53 2 0.01
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (52 bp):
TCACGATGACACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATAC
Found at i:236288 original size:87 final size:86
Alignment explanation
Indices: 236144--236472 Score: 315
Period size: 87 Copynumber: 3.8 Consensus size: 86
236134 TCAAGCATTA
* * * * *
236144 AGCTTTTCAAAGCTCTTGACCTTTTCAAGTCACATGCTTATTAAGGTACCATATCTTTCAAGATG
1 AGCTTTTCAAAGCTCTTGACCTTTTCAAGTCACATACCTATTAAGGTATCGTATCTTT-AAGATA
*
236209 TACATTGCCTTTTCAAGCGTCG
65 CACATTGCCTTTTCAAGCGTCG
* * * *
236231 AGCTTTTCAAAACTCTTGACCTTTTTATGTCACATACCTATTAAGGTATCGTGTCTTTTAAGATA
1 AGCTTTTCAAAGCTCTTGACCTTTTCAAGTCACATACCTATTAAGGTATCGTATC-TTTAAGATA
* **
236296 CACATTGCCTTTTCAAGCATTA
65 CACATTGCCTTTTCAAGCGTCG
* * * *
236318 AGC-TTTCTAAAGCTCTT-AGCCTTTTCAGGTTACGTACCTCTTAAGGTATCGTATCTCTTAAGA
1 AGCTTTTC-AAAGCTCTTGA-CCTTTTCAAGTCACATACCTATTAAGGTATCGTATCT-TTAAGA
* ** *
236381 TACACCTCACCTTCTCAAGCGTCG
63 TACACATTGCCTTTTCAAGCGTCG
** * * * *
236405 AGC-TTTCGAAAGCTCTT-AGGTTTTTCGAGTCACATACCTCTTAAGTTATTGTATCTCTTAAGA
1 AGCTTTTC-AAAGCTCTTGA-CCTTTTCAAGTCACATACCTATTAAGGTATCGTATCT-TTAAGA
236468 TACAC
63 TACAC
236473 CTCATATCTT
Statistics
Matches: 202, Mismatches: 36, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
86 6 0.03
87 193 0.96
88 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (86 bp):
AGCTTTTCAAAGCTCTTGACCTTTTCAAGTCACATACCTATTAAGGTATCGTATCTTTAAGATAC
ACATTGCCTTTTCAAGCGTCG
Found at i:236439 original size:174 final size:175
Alignment explanation
Indices: 236129--236472 Score: 387
Period size: 174 Copynumber: 2.0 Consensus size: 175
236119 AGATACCTCA
* *
236129 CTTTCTCAAGCATTAAGCTTTTCAAAGCTCTTGACCTTTTCAAGTCACATGCTTATTAAGGTACC
1 CTTTCTCAAGCATTAAGCTTTTCAAAGCTCTTGACCTTTTCAAGTCACATACCTATTAAGGTACC
** ** *
236194 ATATCTTTCAAGATGTACATTGCCTTTTCAAGCGTCGAGCTTTTCAAAACTCTTGACCTTTTTAT
66 ATATCTTTCAAGATACACATCACCTTCTCAAGCGTCGAGCTTTTCAAAACTCTTGACCTTTTTAT
* *
236259 GTCACATACCTATTAAGGTATCGTGTCTTTTAAGATACACATTGC
131 GTCACATACCTATTAAGGTATCGTATCTCTTAAGATACACATTGC
* * * *
236304 CTTT-TCAAGCATTAAGC-TTTCTAAAGCTCTT-AGCCTTTTCAGGTTACGTACCTCTTAAGGTA
1 CTTTCTCAAGCATTAAGCTTTTC-AAAGCTCTTGA-CCTTTTCAAGTCACATACCTATTAAGGTA
* * * * **
236366 TCGTATCTCTT-AAGATACACCTCACCTTCTCAAGCGTCGAGC-TTTCGAAAGCTCTT-AGGTTT
64 CCATATCT-TTCAAGATACACATCACCTTCTCAAGCGTCGAGCTTTTC-AAAACTCTTGACCTTT
* * *
236428 TTCGA-GTCACATACCTCTTAAGTTATTGTATCTCTTAAGATACAC
127 TT--ATGTCACATACCTATTAAGGTATCGTATCTCTTAAGATACAC
236473 CTCATATCTT
Statistics
Matches: 141, Mismatches: 22, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
173 15 0.11
174 119 0.84
175 7 0.05
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.38
Consensus pattern (175 bp):
CTTTCTCAAGCATTAAGCTTTTCAAAGCTCTTGACCTTTTCAAGTCACATACCTATTAAGGTACC
ATATCTTTCAAGATACACATCACCTTCTCAAGCGTCGAGCTTTTCAAAACTCTTGACCTTTTTAT
GTCACATACCTATTAAGGTATCGTATCTCTTAAGATACACATTGC
Found at i:236556 original size:107 final size:108
Alignment explanation
Indices: 236369--236623 Score: 379
Period size: 107 Copynumber: 2.4 Consensus size: 108
236359 TAAGGTATCG
* ** * *
236369 TATCTCTTAAGATACACCTCACCTTCTCAAGCGTCGAGCTTTCGAAAGCTCTTAGGTTTTTCGAG
1 TATCTTTTAAGATACACCTTGCCTTCTCAAGCGTCGAGCTTTCGAAAGCTCTTAGATTTTTCAAG
*
236434 TCACATACCTCTTAAGTTATTGTATCTCTTAAGATACACCTCA
66 TCACATACCTCTTAAGGTATTGTATCTCTTAAGATACACCTCA
* * *
236477 TATCTTTTAAGATACA-CTTGCCTTCTCAAGGGTCGAGCTTTCTAAAGCT-TTTGATCTTTTCAA
1 TATCTTTTAAGATACACCTTGCCTTCTCAAGCGTCGAGCTTTCGAAAGCTCTTAGAT-TTTTCAA
* *
236540 GTCACATACCTTTTAAGGTATTGTATCTCTTAAGATACACCTCG
65 GTCACATACCTCTTAAGGTATTGTATCTCTTAAGATACACCTCA
*
236584 TATATTTTAAGATACACCTTGCCTTCTCAAGCGTCGAGCT
1 TATCTTTTAAGATACACCTTGCCTTCTCAAGCGTCGAGCT
236624 GTTAAGGTAT
Statistics
Matches: 132, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
106 4 0.03
107 91 0.69
108 37 0.28
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (108 bp):
TATCTTTTAAGATACACCTTGCCTTCTCAAGCGTCGAGCTTTCGAAAGCTCTTAGATTTTTCAAG
TCACATACCTCTTAAGGTATTGTATCTCTTAAGATACACCTCA
Found at i:237008 original size:67 final size:68
Alignment explanation
Indices: 236937--237094 Score: 196
Period size: 68 Copynumber: 2.3 Consensus size: 68
236927 ACCTTCTTAG
* * * * *
236937 GTCATGTACTTCTTAAAGTACCTCGAC-TTCTTAAGCA-TTTAGTTTTCAAAGCATGTGATCTT-
1 GTCATGTACTTCTTAAAGTACCTC-ACTTTCTTAAGAACTTAACTTATCAAAGCATGTGACCTTC
236999 CCAA
65 CCAA
* *
237003 TGTCATGTACTTCTTAGAGTACCTCACTTTCTTAAGAACTTAACTTATCAAAGCTTGTGACCTTC
1 -GTCATGTACTTCTTAAAGTACCTCACTTTCTTAAGAACTTAACTTATCAAAGCATGTGACCTTC
237068 CCAA
65 CCAA
* *
237072 ATCACGTACTTCTTAAAGTACCT
1 GTCATGTACTTCTTAAAGTACCT
237095 TACATTCTCA
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
66 2 0.03
67 32 0.41
68 40 0.51
69 4 0.05
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (68 bp):
GTCATGTACTTCTTAAAGTACCTCACTTTCTTAAGAACTTAACTTATCAAAGCATGTGACCTTCC
CAA
Found at i:237116 original size:68 final size:68
Alignment explanation
Indices: 236982--237122 Score: 151
Period size: 68 Copynumber: 2.1 Consensus size: 68
236972 CATTTAGTTT
* * * * * * **
236982 TCAAAGCATGTGATCTTCCAATGTCATGTACTTCTTAGAGTACCTCACTTTCTTAAGAACTTAAC
1 TCAAAGCATGTGACCTTCCAATATCACGTACTTCTTAAAGTACCTCACATTCTCAAGAACGCAAC
237047 TTA
66 TTA
* *
237050 TCAAAGCTTGTGACCTTCCCAA-ATCACGTACTTCTTAAAGTACCTTACATTCTCAA-ACACGCA
1 TCAAAGCATGTGACCTT-CCAATATCACGTACTTCTTAAAGTACCTCACATTCTCAAGA-ACGCA
*
237113 ACTTT
64 ACTTA
237118 TCAAA
1 TCAAA
237123 AGTTCATGAC
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
67 1 0.02
68 55 0.92
69 4 0.07
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (68 bp):
TCAAAGCATGTGACCTTCCAATATCACGTACTTCTTAAAGTACCTCACATTCTCAAGAACGCAAC
TTA
Found at i:237711 original size:41 final size:41
Alignment explanation
Indices: 237624--237719 Score: 120
Period size: 41 Copynumber: 2.3 Consensus size: 41
237614 TTTTCAGCGT
* * * *
237624 ATTTTTGTCTCAGTCAAGGAAAAATGCTCCTACATGGAGGT
1 ATTTTTGTCTCATTCAAGGAAAAATGCTCCGACAAGGAGGC
* * *
237665 GTTTTTGTCTCATTCAAGGAAAAATGCTTCGACAAGGCGGC
1 ATTTTTGTCTCATTCAAGGAAAAATGCTCCGACAAGGAGGC
*
237706 ATTTTTATCTCATT
1 ATTTTTGTCTCATT
237720 TAAGAAACAG
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (41 bp):
ATTTTTGTCTCATTCAAGGAAAAATGCTCCGACAAGGAGGC
Found at i:240246 original size:2 final size:2
Alignment explanation
Indices: 240241--240312 Score: 96
Period size: 2 Copynumber: 37.0 Consensus size: 2
240231 GGTAAAAAAT
240241 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
240282 TA T- TC T- TGA GA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA
240313 GAGAGAGAGA
Statistics
Matches: 64, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
1 3 0.05
2 61 0.95
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:241147 original size:16 final size:18
Alignment explanation
Indices: 241123--241155 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
241113 TTTTTAAAAA
241123 TTATAATTTTT-ATTTTT
1 TTATAATTTTTAATTTTT
241140 TTAT-ATTTTTAATTTT
1 TTATAATTTTTAATTTT
241156 AAAAAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (18 bp):
TTATAATTTTTAATTTTT
Found at i:265209 original size:22 final size:21
Alignment explanation
Indices: 265174--265214 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
265164 TATATCATTT
265174 TTATATTTTTTAATATTTATA
1 TTATATTTTTTAATATTTATA
265195 TTATATTATTTTAATATTTA
1 TTATATT-TTTTAATATTTA
265215 ATAATTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
TTATATTTTTTAATATTTATA
Found at i:267381 original size:20 final size:20
Alignment explanation
Indices: 267358--267398 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
267348 GATTAAACTG
*
267358 ATTAAAAACCTATTGAACCA
1 ATTAAAAACCAATTGAACCA
*
267378 ATTAAAAATCAATTGAACCA
1 ATTAAAAACCAATTGAACCA
267398 A
1 A
267399 ATTCTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.17, G:0.05, T:0.24
Consensus pattern (20 bp):
ATTAAAAACCAATTGAACCA
Done.