Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012321.1 Kokia drynarioides strain JFW-HI SEQ_127323, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3437
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:3367 original size:19 final size:18

Alignment explanation


    Indices: 3316--3368  Score: 58
    Period size: 18  Copynumber: 3.0  Consensus size: 18

       3306 AAGATTTTCT

                              
       3316 TTTATTTTTATATTATTA
          1 TTTATTTTTATATTATTA

                *             
       3334 TTTAATTTTA-A-TATT-
          1 TTTATTTTTATATTATTA

                                
       3349 TCTTATGTTTTATATTATTA
          1 T-TTAT-TTTTATATTATTA

       3369 AAAATAGTTA


Statistics
Matches: 28,  Mismatches: 2, Indels: 8
        0.74            0.05        0.21

Matches are distributed among these distances:
  15    1  0.04
  16    7  0.25
  17    6  0.21
  18   10  0.36
  19    4  0.14

ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68


Consensus pattern (18 bp):   
TTTATTTTTATATTATTA
Done.