genome.fa.s12322.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012322.1 Kokia drynarioides strain JFW-HI SEQ_127324, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  238935

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--47	16	2.8	15	80	10	52	75	0	22	2	0.92
20--60	6	6.8	6	86	8	57	78	0	21	0	0.76
23--58	19	1.9	18	94	5	63	77	0	22	0	0.76
915--1080	49	3.4	48	73	14	135	36	13	25	24	1.92
940--1090	49	3.1	47	75	14	146	36	10	26	26	1.89
916--1109	98	2.0	98	80	13	222	37	11	26	24	1.90
1367--1909	45	12.3	45	76	10	485	30	22	18	27	1.98
1375--1889	88	5.8	88	79	10	441	30	23	17	28	1.97
1367--1909	174	3.1	173	81	7	587	30	22	18	27	1.98
1367--1909	46	12.3	46	76	12	460	30	22	18	27	1.98
2022--2460	158	2.8	161	81	4	548	39	18	19	22	1.92
2288--3891	209	7.7	209	86	2	2085	38	17	20	22	1.93
2853--3012	85	1.9	85	85	2	223	39	15	23	22	1.91
2291--3874	613	2.6	614	88	2	2294	38	17	20	22	1.93
3460--3626	85	2.0	85	81	2	201	37	15	21	25	1.93
4709--4735	2	13.5	2	100	0	54	48	0	0	51	1.00
5457--5564	30	3.6	29	80	12	103	36	22	7	34	1.82
5476--5611	30	4.5	30	74	13	100	36	20	8	34	1.82
6546--6734	93	2.0	92	90	1	297	51	5	4	38	1.46
6898--6945	19	2.5	20	75	21	50	54	0	0	45	0.99
6735--7005	149	1.8	147	84	8	361	52	5	4	37	1.45
8531--8583	25	2.1	25	100	0	106	26	24	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23339--23393	22	2.5	22	96	0	101	23	27	23	25	2.00
25881--25938	28	2.1	28	93	6	100	32	18	1	46	1.60
25953--26053	20	4.8	20	76	9	85	51	10	8	28	1.67
25977--26042	23	3.1	21	80	6	80	53	10	6	30	1.60
30822--30915	44	2.1	44	88	0	134	18	19	20	42	1.89
30867--31173	36	8.4	36	72	9	151	21	19	16	42	1.89
30876--31162	73	3.9	72	70	8	184	22	19	16	41	1.90
33546--33662	45	2.6	44	83	1	144	44	11	17	26	1.82
33518--33670	44	3.4	45	81	1	157	41	13	19	25	1.87
42742--42812	6	11.8	6	90	0	115	1	19	49	29	1.57
52938--53012	24	3.1	24	90	0	123	25	22	25	26	2.00
54790--54832	22	1.9	23	85	4	61	48	6	6	37	1.57
63520--63584	17	3.9	16	82	7	76	18	23	12	46	1.82
116179--116213	18	1.9	18	94	0	61	17	11	28	42	1.83
122441--122470	13	2.3	13	100	0	60	46	0	13	40	1.43
142163--142213	18	2.8	18	79	5	59	31	31	17	19	1.95
161524--161565	21	2.0	22	95	4	77	19	4	4	71	1.22
165119--165168	25	2.0	26	88	4	75	32	16	18	34	1.92
166679--166724	24	2.0	23	87	12	67	36	21	4	36	1.74
177602--177643	18	2.3	18	100	0	84	11	11	16	59	1.61
179769--179798	14	2.2	14	94	5	53	30	23	10	36	1.87
188759--188817	3	19.7	3	73	13	50	62	0	35	1	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190278--190312	19	1.9	18	88	11	54	40	5	17	37	1.73
203332--203390	30	2.0	30	83	6	75	27	1	5	66	1.22
203506--203540	16	2.2	16	90	5	54	57	5	0	37	1.23
204081--204162	22	3.9	22	72	15	82	56	2	1	40	1.20
204079--204168	41	2.2	41	78	13	105	58	2	1	37	1.17
204998--205067	3	25.0	3	84	11	87	0	28	0	71	0.86
207199--207259	14	4.4	14	77	4	52	37	24	16	21	1.93
207207--207262	21	2.7	21	85	0	76	37	23	16	23	1.93
208636--208680	3	16.0	3	77	13	51	0	26	0	73	0.84
208623--208680	14	3.9	14	76	12	53	1	25	0	72	0.94
208637--208674	17	2.2	17	100	0	76	0	23	0	76	0.79
208637--208674	8	4.4	9	90	9	62	0	23	0	76	0.79
221744--221938	93	2.1	93	90	1	302	16	23	16	43	1.88
221854--222002	81	1.8	81	84	2	201	18	20	19	42	1.90
224001--224034	15	2.2	16	89	5	52	64	0	2	32	1.08
224886--224968	24	3.2	24	68	18	67	54	2	1	42	1.21

Tables:   1

The End!