genome.fa.s12330.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012330.1 Kokia drynarioides strain JFW-HI SEQ_127332, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143461

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4949--4979	15	2.1	15	100	0	62	45	12	6	35	1.68
4915--5044	57	2.3	56	77	12	158	30	10	10	49	1.70
17731--17811	39	2.1	39	100	0	162	49	4	4	40	1.46
26455--26507	15	3.7	15	75	10	56	39	1	0	58	1.09
32990--33026	2	18.5	2	100	0	74	51	0	0	48	1.00
42801--42834	12	2.8	12	86	0	50	41	5	8	44	1.60
42804--42841	20	1.9	20	88	0	58	39	5	10	44	1.61
44558--44583	2	13.0	2	100	0	52	50	0	50	0	1.00
51550--51588	20	2.0	20	85	9	55	38	25	5	30	1.78
52944--53179	96	2.5	96	96	0	427	38	12	19	29	1.89
52944--53211	96	2.8	96	92	3	308	39	13	18	28	1.88
53424--53484	28	2.1	29	81	6	79	27	11	26	34	1.91
53568--53659	29	3.2	28	72	13	87	26	7	30	35	1.84
53558--53843	59	4.9	59	78	9	198	34	5	25	34	1.79
53677--53833	29	5.4	29	80	7	167	36	3	23	36	1.71
53702--53841	30	4.8	29	79	11	135	39	2	20	37	1.68
54990--55029	3	13.0	3	84	5	53	37	0	2	60	1.11
54990--55038	15	3.2	15	88	2	53	36	2	4	57	1.30
55761--55876	17	6.4	17	84	13	151	56	1	0	40	1.15
55782--55877	11	9.0	11	74	17	78	59	2	0	38	1.09
55776--55876	23	4.2	23	75	16	89	58	1	0	39	1.09
55761--55876	40	3.2	34	82	15	151	56	1	0	40	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56182--56847	206	3.2	204	87	1	875	22	21	19	36	1.95
56889--57061	78	2.2	77	81	6	188	26	17	28	27	1.98
57318--58240	50	18.6	49	70	11	441	14	26	19	39	1.90
57325--58240	150	6.2	150	79	8	797	13	26	19	40	1.89
57544--58063	250	2.1	250	90	0	808	14	25	20	40	1.89
58116--58235	51	2.4	51	75	10	120	11	29	18	40	1.86
57939--58230	143	2.0	141	90	0	440	14	25	19	40	1.90
59460--59550	6	14.8	6	76	13	60	0	20	3	75	0.94
59469--59547	3	26.7	3	80	12	83	0	24	2	73	0.96
65182--65340	29	5.4	29	78	2	138	32	1	25	40	1.66
65179--65340	88	1.9	87	85	3	227	32	1	25	40	1.66
66483--66522	3	13.0	3	84	5	53	37	0	2	60	1.11
66483--66531	15	3.2	15	88	2	53	36	2	4	57	1.30
66541--66566	2	13.0	2	100	0	52	50	0	0	50	1.00
67251--67294	18	2.4	18	85	11	63	45	0	4	50	1.22
67251--67294	17	2.4	18	88	7	63	45	0	4	50	1.22
67272--67316	11	4.0	11	80	5	54	55	2	2	40	1.24
71331--71455	62	2.0	62	93	3	216	30	7	29	32	1.84
71478--71569	43	2.2	42	90	3	148	30	4	6	58	1.43
72104--72143	16	2.3	18	87	8	57	17	5	7	70	1.30
78239--78279	21	1.9	22	95	5	75	53	4	2	39	1.35
78887--78915	3	9.7	3	100	0	58	34	31	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86761--86819	29	2.0	29	87	12	84	27	3	1	67	1.16
86930--86968	12	3.2	12	78	7	51	53	2	0	43	1.14
90711--90769	27	2.3	26	78	13	70	57	5	6	30	1.46
93416--93451	19	2.0	18	89	10	56	50	0	0	50	1.00
93420--93459	19	2.2	19	86	8	57	55	0	0	45	0.99
93416--93464	15	2.8	19	71	25	54	53	0	0	46	1.00
93560--93665	55	1.9	56	90	7	171	39	0	2	56	1.20
95075--95154	16	4.8	17	73	11	69	36	1	0	62	1.03
96458--96484	3	9.0	3	100	0	54	66	0	0	33	0.92
96456--96515	15	3.9	15	78	4	66	63	1	0	35	1.05
96863--96902	20	2.0	20	85	5	53	45	2	10	42	1.51
97425--97820	29	13.5	29	74	13	292	33	28	4	33	1.78
97425--97703	59	4.7	59	85	4	309	34	26	4	34	1.76
97424--97703	88	3.2	84	81	10	294	34	26	4	34	1.76
97539--97840	59	5.1	57	76	6	198	32	29	6	31	1.82
109162--109378	115	1.9	115	87	1	319	34	17	24	23	1.96
109240--109873	206	3.1	200	83	5	772	35	19	22	21	1.96
110247--110289	22	2.0	20	91	8	68	44	2	0	53	1.13
112134--112499	29	12.5	30	74	15	304	31	29	5	32	1.81
112134--112499	58	6.2	60	81	7	380	31	29	5	32	1.81
113623--113831	104	2.0	101	85	7	278	37	18	13	30	1.90
114178--114385	60	3.5	59	78	6	197	39	6	21	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114171--114341	30	5.7	30	79	3	130	41	5	19	33	1.75
114183--114385	89	2.3	89	78	9	225	38	5	21	33	1.78
119286--119399	58	1.9	59	87	5	169	26	15	16	41	1.89
126384--126474	44	2.1	44	100	0	182	31	16	8	42	1.79
131683--131712	2	15.0	2	100	0	60	50	0	0	50	1.00
133305--133376	20	3.5	20	71	17	76	38	12	4	44	1.62
133291--133379	41	2.2	41	95	0	160	37	11	3	48	1.56
138759--138786	5	5.6	5	100	0	56	42	17	0	39	1.50
142941--143083	58	2.5	58	79	8	166	32	2	25	39	1.68
142941--143146	29	7.2	29	73	16	146	34	2	25	36	1.71
143069--143144	25	2.8	26	84	11	93	40	3	22	32	1.72
143041--143144	54	1.9	54	88	3	156	37	2	24	35	1.70

Tables:   1

The End!