Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012344.1 Kokia drynarioides strain JFW-HI SEQ_127346, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124484
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Warning! 11 characters in sequence are not A, C, G, or T
Found at i:1199 original size:201 final size:201
Alignment explanation
Indices: 623--1269 Score: 1089
Period size: 201 Copynumber: 3.2 Consensus size: 201
613 TGCAATACCC
* *
623 ACAAACGACGTGGTCATCTTCCTAATGAAATACCGAGAAGAAGACCCAAACGAGGCTCAAAGTGA
1 ACAAACGACGCGGTCATCTTCCTAATGAGATACCGAGAAGAAGACCCAAACGAGGCTCAAAGTGA
*
688 GCGAAATCTTCAAAACCTAGCTTCCTGATGAGACACTGAGAAGCAGGTGGAAGCAATAAAAGGTT
66 GCGAAATCTTCAAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTGGAAGCAATAAAAGGTT
* *
753 AGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCTTGATGAGATACAGGGAAGCGA
131 AGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
818 GTTGAA
196 GTTGAA
*
824 ACAAACGACGCGGTCATCTTCCTAATGAGATATCGAGAAGAAGACCCCAAACGAGGCTCAAAGTG
1 ACAAACGACGCGGTCATCTTCCTAATGAGATACCGAGAAGAAGA-CCCAAACGAGGCTCAAAGTG
* *
889 AACGAAACCTTCAAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTGGAAGCAATAAAAGGT
65 AGCGAAATCTTCAAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTGGAAGCAATAAAAGGT
*
954 TAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATATAGAGAAGCG
130 TAGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCG
1019 AGTTGAA
195 AGTTGAA
* * *
1026 ACAAACGACGCGGTCATCTTCCTGATGAGACACCGAGAAGAAGACCCAAACGAAGCTCAAAGTGA
1 ACAAACGACGCGGTCATCTTCCTAATGAGATACCGAGAAGAAGACCCAAACGAGGCTCAAAGTGA
* *
1091 GCGAAATCTTAAAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTGGAAGCAATAAATGGTT
66 GCGAAATCTTCAAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTGGAAGCAATAAAAGGTT
* * * *
1156 AGCCTCCTGATGAGATACTGAGAAATGAACCAAATTTGTCTTCCTAATGAGATACAGAGAAGCG-
131 AGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
1220 GATTGAA
196 G-TTGAA
* *
1227 ACAAGCGACGCGGTCATTTTCCTAATGAGATACCGAGAAGAAG
1 ACAAACGACGCGGTCATCTTCCTAATGAGATACCGAGAAGAAG
1270 GCCGAGTCAA
Statistics
Matches: 418, Mismatches: 26, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
200 1 0.00
201 225 0.54
202 192 0.46
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (201 bp):
ACAAACGACGCGGTCATCTTCCTAATGAGATACCGAGAAGAAGACCCAAACGAGGCTCAAAGTGA
GCGAAATCTTCAAAACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTGGAAGCAATAAAAGGTT
AGCTTCCTGATGAGATACTGAGAAGTGAACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA
GTTGAA
Found at i:1621 original size:6 final size:6
Alignment explanation
Indices: 1610--1670 Score: 56
Period size: 6 Copynumber: 10.5 Consensus size: 6
1600 AATTGTTTAA
* * *
1610 AAATTT AAATTT -ATTTT TAATTT AAATTT -AATTT AAGTTT AAATTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
*
1656 -ATTTT CAAATTT AAA
1 AAATTT -AAATTT AAA
1671 ATTGCTAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
5 13 0.30
6 27 0.61
7 4 0.09
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (6 bp):
AAATTT
Found at i:1631 original size:17 final size:17
Alignment explanation
Indices: 1611--1670 Score: 77
Period size: 17 Copynumber: 3.5 Consensus size: 17
1601 ATTGTTTAAA
1611 AATTTAAATTTATTTTT
1 AATTTAAATTTATTTTT
*
1628 AATTTAAATTTA-ATTT
1 AATTTAAATTTATTTTT
*
1644 AAGTTTAAATTTATTTTCA
1 AA-TTTAAATTTATTTT-T
1663 AATTTAAA
1 AATTTAAA
1671 ATTGCTAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
16 5 0.14
17 22 0.59
18 8 0.22
19 2 0.05
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (17 bp):
AATTTAAATTTATTTTT
Found at i:3670 original size:30 final size:30
Alignment explanation
Indices: 3636--3777 Score: 94
Period size: 31 Copynumber: 5.0 Consensus size: 30
3626 ACCATTTTAC
3636 CCTCGAACTTCTAAAAAATCCCATTTTTGA
1 CCTCGAACTTCTAAAAAATCCCATTTTTGA
* *
3666 CCTCGAACCTTCTAAAAATTACCA--TTT--
1 CCTCGAA-CTTCTAAAAAATCCCATTTTTGA
*
3693 --T--AACTTC-CAAAAATCCCATTTTTGA
1 CCTCGAACTTCTAAAAAATCCCATTTTTGA
* *
3718 -CTCCGAACCTTCTAAAAATTACCA-TTTT-A
1 CCT-CGAA-CTTCTAAAAAATCCCATTTTTGA
* *
3747 CCCCCGAACTTC-CAAAAATCCCATTTTTGA
1 -CCTCGAACTTCTAAAAAATCCCATTTTTGA
3777 C
1 C
3778 TCCAAACCTT
Statistics
Matches: 85, Mismatches: 12, Indels: 31
0.66 0.09 0.24
Matches are distributed among these distances:
21 8 0.09
22 4 0.05
23 5 0.06
25 1 0.01
26 1 0.01
28 8 0.09
29 15 0.18
30 20 0.24
31 23 0.27
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.32
Consensus pattern (30 bp):
CCTCGAACTTCTAAAAAATCCCATTTTTGA
Found at i:3704 original size:22 final size:21
Alignment explanation
Indices: 3674--3714 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
3664 GACCTCGAAC
*
3674 CTTCTAAAAATTACCATTTTAA
1 CTTCCAAAAA-TACCATTTTAA
*
3696 CTTCCAAAAATCCCATTTT
1 CTTCCAAAAATACCATTTT
3715 TGACTCCGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.37, C:0.24, G:0.00, T:0.39
Consensus pattern (21 bp):
CTTCCAAAAATACCATTTTAA
Found at i:3786 original size:59 final size:58
Alignment explanation
Indices: 3694--3810 Score: 180
Period size: 59 Copynumber: 2.0 Consensus size: 58
3684 TTACCATTTT
* *
3694 AACTTCCAAAAATCCCATTTTTGACTCCGAACCTTCTAAAAATTACCATTTTACCCCCG
1 AACTTCCAAAAATCCCATTTTTGACTCCAAACCTTC-AAAAACTACCATTTTACCCCCG
* * *
3753 AACTTCCAAAAATCCCATTTTTGACTCCAAACCTTCCAAAACTAGCATTTTGCCCCCG
1 AACTTCCAAAAATCCCATTTTTGACTCCAAACCTTCAAAAACTACCATTTTACCCCCG
3811 TGCATCCGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 18 0.34
59 35 0.66
ACGTcount: A:0.32, C:0.33, G:0.06, T:0.29
Consensus pattern (58 bp):
AACTTCCAAAAATCCCATTTTTGACTCCAAACCTTCAAAAACTACCATTTTACCCCCG
Found at i:3791 original size:30 final size:30
Alignment explanation
Indices: 3696--3793 Score: 121
Period size: 30 Copynumber: 3.3 Consensus size: 30
3686 ACCATTTTAA
3696 CTTCCAAAAATCCCATTTTTGACTCCGAAC
1 CTTCCAAAAATCCCATTTTTGACTCCGAAC
* * *
3726 CTTCTAAAAATTACCA-TTTT-ACCCCCGAA-
1 CTTCCAAAAA-TCCCATTTTTGA-CTCCGAAC
*
3755 CTTCCAAAAATCCCATTTTTGACTCCAAAC
1 CTTCCAAAAATCCCATTTTTGACTCCGAAC
3785 CTTCCAAAA
1 CTTCCAAAA
3794 CTAGCATTTT
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
28 4 0.07
29 19 0.34
30 29 0.52
31 4 0.07
ACGTcount: A:0.34, C:0.33, G:0.04, T:0.30
Consensus pattern (30 bp):
CTTCCAAAAATCCCATTTTTGACTCCGAAC
Found at i:6028 original size:378 final size:379
Alignment explanation
Indices: 5290--6029 Score: 857
Period size: 378 Copynumber: 2.0 Consensus size: 379
5280 AAAAACTTAA
* ** * *
5290 ACTTGACACAAAAGAAGATCAAAGAAAAGGGTTTATATAAAAAGTGAGGATGAAAACAAGGAATG
1 ACTTGAAACAAAAGAAGATCAAAGAAAAGAATTTAGATAAAAAGTGAGGATGAAAACAAGGAACG
** * *
5355 AAGCCTTTAAGGGAAATAAACACAATTGTATAAGCATCCCTAAACTCTTTTATGTTTTGTTTCCC
66 AAGCCTTTAAGGGAAATAAACACAATAATATAAGCATCCCCAAACTCTTTTATGTTTTGTTTCCA
* ** *
5420 CCCTTTTATTCCCTCGACGCGTATTTGAAACTTGAATTGGGGTGAAATTTGACAATGCAAAACAA
131 CCCTTTTATTCACTCGACGCGTATAGGAAACTTGAATTGGGGTGAAAGTTGACAATGCAAAACAA
** * * * **
5485 GTGATCAATTTTGTTAAAAAATAAAAGAGAAACACATGTCTTTTGTGATATTTAAGCAAACATTC
196 GTGATCAATAATGTTAAAAAATAAAACAAAAACACATATCTTTTGAAATATTTAAGCAAACATTC
* * ** * *
5550 CAATGAAAGATTAGAGTCGTAATTACAGTGTAAACAACCGAGAAATATGGTAGGAAGCAGTTATC
261 CAATGAAAGATTAGAGTCATAATTACAGTGGAAACAACAAACAAATATGGCAGGAAGCAGTTATC
* *
5615 TTGGTTAGCCTCAAAACAATTGAATTCTATGCATTTTCAATCGTGACACAGAAT
326 ATGGTTAGCCTCAAAACAATTGAATACTATGCATTTTCAATCGTGACACAGAAT
* * * * * *
5669 ACTTGAAACAGAAGAAGATCAAAGAAAATAATTTAGATAAAAAGTGAGGTTGAGAATAAGGAGCG
1 ACTTGAAACAAAAGAAGATCAAAGAAAAGAATTTAGATAAAAAGTGAGGATGAAAACAAGGAACG
**
5734 AAGCCTTTAAGGGAAATAAACATGATAATATAAGCA-CCCCAAACTCTTTATATGTTTT-TCTTC
66 AAGCCTTTAAGGGAAATAAACACAATAATATAAGCATCCCCAAACTCTTT-TATGTTTTGT-TTC
** * * * * *
5797 CACCC-TTTATTCACTCGGTGTGTATAGGAATCTTTAATTGTGGTGAAAGTTGATAATGCAAAAC
129 CACCCTTTTATTCACTCGACGCGTATAGGAAACTTGAATTGGGGTGAAAGTTGACAATGCAAAAC
* *
5861 AAGTGGT-ATATAATGTTAAAAAATAAAACAAAAACTA-ATAT-TTTTGAAAATATTTAAGCGAA
194 AAGTGATCA-ATAATGTTAAAAAATAAAACAAAAAC-ACATATCTTTTG-AAATATTTAAGCAAA
* * * * * *
5923 CTTTCCAATGAATGATTATAGTCATTATTACATTGGAAACAACAAACAAATATGGCAGGGAGCAA
256 CATTCCAATGAAAGATTAGAGTCATAATTACAGTGGAAACAACAAACAAATATGGCAGGAAGC-A
** * * *
5988 G-TATCATGGTT-GACCTTTAACCAATTGGATACTCTGCATTTT
320 GTTATCATGGTTAG-CCTCAAAACAATTGAATACTATGCATTTT
6030 TGGACTCTTT
Statistics
Matches: 298, Mismatches: 56, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
377 7 0.02
378 187 0.63
379 104 0.35
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (379 bp):
ACTTGAAACAAAAGAAGATCAAAGAAAAGAATTTAGATAAAAAGTGAGGATGAAAACAAGGAACG
AAGCCTTTAAGGGAAATAAACACAATAATATAAGCATCCCCAAACTCTTTTATGTTTTGTTTCCA
CCCTTTTATTCACTCGACGCGTATAGGAAACTTGAATTGGGGTGAAAGTTGACAATGCAAAACAA
GTGATCAATAATGTTAAAAAATAAAACAAAAACACATATCTTTTGAAATATTTAAGCAAACATTC
CAATGAAAGATTAGAGTCATAATTACAGTGGAAACAACAAACAAATATGGCAGGAAGCAGTTATC
ATGGTTAGCCTCAAAACAATTGAATACTATGCATTTTCAATCGTGACACAGAAT
Found at i:11301 original size:3 final size:3
Alignment explanation
Indices: 11270--11320 Score: 61
Period size: 3 Copynumber: 17.7 Consensus size: 3
11260 TGTAGGTTTA
* * *
11270 ATT ATT -TT ATA ATT TTT ATT GTT -TT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
11316 ATT AT
1 ATT AT
11321 NNNNNNNNNN
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
2 4 0.10
3 37 0.90
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:13870 original size:17 final size:17
Alignment explanation
Indices: 13848--13898 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
13838 GGTTTAATTA
*
13848 TTTTATAATTTTTATTG
1 TTTTATAATTATTATTG
* *
13865 TTTTATTATTATTATTA
1 TTTTATAATTATTATTG
*
13882 TTATTATTATTATTATT
1 TT-TTATAATTATTATT
13899 ATTATTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 16 0.53
18 14 0.47
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (17 bp):
TTTTATAATTATTATTG
Found at i:13875 original size:3 final size:3
Alignment explanation
Indices: 13844--13907 Score: 87
Period size: 3 Copynumber: 22.0 Consensus size: 3
13834 TGTAGGTTTA
* * *
13844 ATT ATT -TT ATA ATT TTT ATT GTT -TT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
13890 ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT
13908 TGTTTTAATA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
2 4 0.07
3 50 0.93
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:22692 original size:23 final size:23
Alignment explanation
Indices: 22664--22744 Score: 126
Period size: 23 Copynumber: 3.5 Consensus size: 23
22654 CGTCCATCCT
* *
22664 TGCTGACTAGACCTTCTAGAAGC
1 TGCTGACTGGATCTTCTAGAAGC
* *
22687 TGCTGACTGGATCTTCTGGAAGT
1 TGCTGACTGGATCTTCTAGAAGC
22710 TGCTGACTGGATCTTCTAGAAGC
1 TGCTGACTGGATCTTCTAGAAGC
22733 TGCTGACTGGAT
1 TGCTGACTGGAT
22745 GCCACGTCAG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 52 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (23 bp):
TGCTGACTGGATCTTCTAGAAGC
Found at i:24029 original size:29 final size:29
Alignment explanation
Indices: 23921--24321 Score: 258
Period size: 29 Copynumber: 14.1 Consensus size: 29
23911 GAAAATGAAG
* * *
23921 TTTTGGAGAGTTCGGGGGTTAAAATGTAAT
1 TTTTGGA-AGTTCGAGGGTAAAAATGTGAT
*** ** *
23951 TTTAAAAAGTTTAAGGGT-AAAATGTAAT
1 TTTTGGAAGTTCGAGGGTAAAAATGTGAT
* * * *
23979 TTTAGGAAATTCGA-GGTAAAAATATGTT
1 TTTTGGAAGTTCGAGGGTAAAAATGTGAT
* *
24007 TTTTGGAAGTTCGAGGGCAAAAATGTAAT
1 TTTTGGAAGTTCGAGGGTAAAAATGTGAT
* **
24036 TTTTAGAAGTTTTAGGGTAAAAATGTGAT
1 TTTTGGAAGTTCGAGGGTAAAAATGTGAT
24065 TTTTGG-A-----A--GTAAAAATGTGAT
1 TTTTGGAAGTTCGAGGGTAAAAATGTGAT
* *
24086 TTTTGGAAGTTCGAGGGCAAAAATATGAT
1 TTTTGGAAGTTCGAGGGTAAAAATGTGAT
* * * *
24115 TTTCGAAAAGTTCGGGGGTAAAAACGTGAT
1 TTTTG-GAAGTTCGAGGGTAAAAATGTGAT
* *
24145 TTTTGGAAGTTTGAGGGTAAAAATGTAAT
1 TTTTGGAAGTTCGAGGGTAAAAATGTGAT
* *
24174 TTTGGAGAAGTT-TAGGGGTAAAAATGGTGAT
1 TTTTG-GAAGTTCGA-GGGTAAAAAT-GTGAT
24205 TTTTAGGAAGTTC-AGGGGTAAAAATGTGAT
1 TTTT-GGAAGTTCGA-GGGTAAAAATGTGAT
** *
24235 TTTTGGAAGTTTAAGGGCAAAAATGT-A-
1 TTTTGGAAGTTCGAGGGTAAAAATGTGAT
* ** * * *
24262 ATTAAGAAGTT--TGGGCAAAAATGTAAT
1 TTTTGGAAGTTCGAGGGTAAAAATGTGAT
** * *
24289 TTTAAGAAGTTCAAGGGCAAAAATGTGAT
1 TTTTGGAAGTTCGAGGGTAAAAATGTGAT
24318 TTTT
1 TTTT
24322 AAGAAAATAG
Statistics
Matches: 296, Mismatches: 54, Indels: 43
0.75 0.14 0.11
Matches are distributed among these distances:
21 19 0.06
22 1 0.00
23 1 0.00
25 12 0.04
26 1 0.00
27 22 0.07
28 40 0.14
29 121 0.41
30 53 0.18
31 25 0.08
32 1 0.00
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.34
Consensus pattern (29 bp):
TTTTGGAAGTTCGAGGGTAAAAATGTGAT
Found at i:24076 original size:21 final size:21
Alignment explanation
Indices: 24052--24095 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
24042 AAGTTTTAGG
24052 GTAAAAATGTGATTTTTGGAA
1 GTAAAAATGTGATTTTTGGAA
24073 GTAAAAATGTGATTTTTGGAA
1 GTAAAAATGTGATTTTTGGAA
24094 GT
1 GT
24096 TCGAGGGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.00, G:0.25, T:0.39
Consensus pattern (21 bp):
GTAAAAATGTGATTTTTGGAA
Found at i:24104 original size:79 final size:80
Alignment explanation
Indices: 23994--24154 Score: 225
Period size: 79 Copynumber: 2.0 Consensus size: 80
23984 GAAATTCGAG
* * * * **
23994 GTAAAAATATGTTTTTTGGAAGTTCGAGGGCAAAAATGTAATTTT-TAGAAGTTTTAGGGTAAAA
1 GTAAAAATATGATTTTTGGAAGTTCGAGGGCAAAAATATAATTTTCGAAAAGTTCGAGGGTAAAA
*
24058 ATGTGATTTTTGGAA
66 ACGTGATTTTTGGAA
* * *
24073 GTAAAAATGTGATTTTTGGAAGTTCGAGGGCAAAAATATGATTTTCGAAAAGTTCGGGGGTAAAA
1 GTAAAAATATGATTTTTGGAAGTTCGAGGGCAAAAATATAATTTTCGAAAAGTTCGAGGGTAAAA
24138 ACGTGATTTTTGGAA
66 ACGTGATTTTTGGAA
24153 GT
1 GT
24155 TTGAGGGTAA
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
79 41 0.58
80 30 0.42
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.35
Consensus pattern (80 bp):
GTAAAAATATGATTTTTGGAAGTTCGAGGGCAAAAATATAATTTTCGAAAAGTTCGAGGGTAAAA
ACGTGATTTTTGGAA
Found at i:24154 original size:109 final size:107
Alignment explanation
Indices: 23969--24176 Score: 272
Period size: 109 Copynumber: 1.9 Consensus size: 107
23959 GTTTAAGGGT
* * * * *
23969 AAAATGTAATTTTAGGAAATTCGAGGTAAAAATATGTTTTTTGGAAGTTCGAGGGCAAAAATGTA
1 AAAATGTAATTTTAGGAAATTCGAGGCAAAAATATGATTTTCGAAAGTTCGAGGGCAAAAACGTA
* *
24034 ATTTTTAGAAGTTTTAGGGTAAAAATGTGATTTTTGGAAGTA
66 ATTTTTAGAAGTTTGAGGGTAAAAATGTAATTTTTGGAAGTA
* * * * *
24076 AAAATGTGATTTTTGGAAGTTCGAGGGCAAAAATATGATTTTCGAAAAGTTCGGGGGTAAAAACG
1 AAAATGTAATTTTAGGAAATTCGA-GGCAAAAATATGATTTTCG-AAAGTTCGAGGGCAAAAACG
* *
24141 TGATTTTTGGAAGTTTGAGGGTAAAAATGTAATTTT
64 TAATTTTTAGAAGTTTGAGGGTAAAAATGTAATTTT
24177 GGAGAAGTTT
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
107 21 0.25
108 16 0.19
109 48 0.56
ACGTcount: A:0.36, C:0.04, G:0.25, T:0.35
Consensus pattern (107 bp):
AAAATGTAATTTTAGGAAATTCGAGGCAAAAATATGATTTTCGAAAGTTCGAGGGCAAAAACGTA
ATTTTTAGAAGTTTGAGGGTAAAAATGTAATTTTTGGAAGTA
Found at i:24167 original size:59 final size:59
Alignment explanation
Indices: 24073--24237 Score: 197
Period size: 59 Copynumber: 2.8 Consensus size: 59
24063 ATTTTTGGAA
* * * * *
24073 GTAAAAATGTGATTTTTGGAAGTTCGAGGGCAAAAATATGATTTTCGAAAAGTTCGGGG
1 GTAAAAACGTGATTTTTGGAAGTTTGAGGGTAAAAATGTGATTTTCGAAAAGTTCAGGG
* * * *
24132 GTAAAAACGTGATTTTTGGAAGTTTGAGGGTAAAAATGTAATTTTGGAGAAGTTTAGGG
1 GTAAAAACGTGATTTTTGGAAGTTTGAGGGTAAAAATGTGATTTTCGAAAAGTTCAGGG
* *
24191 GTAAAAATGGTGATTTTTAGGAAG-TTCAGGGGTAAAAATGTGATTTT
1 GTAAAAA-CGTGATTTTT-GGAAGTTTGA-GGGTAAAAATGTGATTTT
24238 TGGAAGTTTA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
59 57 0.63
60 12 0.13
61 22 0.24
ACGTcount: A:0.34, C:0.04, G:0.29, T:0.33
Consensus pattern (59 bp):
GTAAAAACGTGATTTTTGGAAGTTTGAGGGTAAAAATGTGATTTTCGAAAAGTTCAGGG
Found at i:24224 original size:90 final size:83
Alignment explanation
Indices: 24100--24321 Score: 248
Period size: 90 Copynumber: 2.6 Consensus size: 83
24090 GGAAGTTCGA
* * * * * *
24100 GGGCAAAAATATGATTTTCGAA-AAGTTCGGGGGTAAAAACGTGATTTTTGGAAGTTTGAGGGTA
1 GGGCAAAAATGTAATTTT--AAGAAGTTCAGGGGTAAAAATGTGATTTTTGGAAGTTTAAGGGCA
*
24164 AAAATGTAATTTTGGAGAAGTTT
64 AAAATGTAA--TT-AAGAAGTTT
* * *
24187 AGGGGTAAAAATGGTGATTTTTAGGAAGTTCAGGGGTAAAAATGTGATTTTTGGAAGTTTAAGGG
1 --GGGCAAAAAT-GT-AATTTTAAGAAGTTCAGGGGTAAAAATGTGATTTTTGGAAGTTTAAGGG
24252 CAAAAATGTAATTAAGAAGTTT
62 CAAAAATGTAATTAAGAAGTTT
* *
24274 GGGCAAAAATGTAATTTTAAGAAGTTCAAGGGCAAAAATGTGATTTTT
1 GGGCAAAAATGTAATTTTAAGAAGTTCAGGGGTAAAAATGTGATTTTT
24322 AAGAAAATAG
Statistics
Matches: 115, Mismatches: 15, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
83 32 0.28
84 2 0.02
85 9 0.08
87 8 0.07
88 2 0.02
89 10 0.09
90 48 0.42
91 4 0.03
ACGTcount: A:0.36, C:0.04, G:0.27, T:0.32
Consensus pattern (83 bp):
GGGCAAAAATGTAATTTTAAGAAGTTCAGGGGTAAAAATGTGATTTTTGGAAGTTTAAGGGCAAA
AATGTAATTAAGAAGTTT
Found at i:24280 original size:25 final size:26
Alignment explanation
Indices: 24240--24319 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 26
24230 GTGATTTTTG
24240 GAAGTTTAAGGGCAAAAATGTAA-TTAA
1 GAAGTTT--GGGCAAAAATGTAATTTAA
24267 GAAGTTTGGGCAAAAATGTAATTTTAA
1 GAAGTTTGGGCAAAAATGTAA-TTTAA
* *
24294 GAAGTTCAAGGGCAAAAATGTGATTT
1 GAAGTT--TGGGCAAAAATGTAATTT
24320 TTAAGAAAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
25 14 0.30
27 17 0.36
28 3 0.06
29 13 0.28
ACGTcount: A:0.42, C:0.05, G:0.24, T:0.29
Consensus pattern (26 bp):
GAAGTTTGGGCAAAAATGTAATTTAA
Found at i:26129 original size:6 final size:6
Alignment explanation
Indices: 26120--26185 Score: 57
Period size: 6 Copynumber: 11.5 Consensus size: 6
26110 ATTTAGAATG
* * * *
26120 AATTTA AATTCA AA-ATA AATTTA AATTTA AA-CTA AATTTA AACTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
* *
26166 AA-ATA AATTAA AATTTA AAT
1 AATTTA AATTTA AATTTA AAT
26186 AAAAAGAGTT
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
5 11 0.24
6 35 0.76
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.38
Consensus pattern (6 bp):
AATTTA
Found at i:26183 original size:17 final size:17
Alignment explanation
Indices: 26084--26188 Score: 122
Period size: 17 Copynumber: 6.2 Consensus size: 17
26074 AATTTTTAGT
* *
26084 TAAATATAAATTCAAAA
1 TAAATTTAAATTTAAAA
* *
26101 TAAACTTAAATTTAGAA
1 TAAATTTAAATTTAAAA
* *
26118 TGAATTTAAATTCAAAA
1 TAAATTTAAATTTAAAA
*
26135 TAAATTTAAATTTAAAC
1 TAAATTTAAATTTAAAA
*
26152 TAAATTTAAACTTAAAA
1 TAAATTTAAATTTAAAA
*
26169 TAAATTAAAATTT-AAA
1 TAAATTTAAATTTAAAA
26185 TAAA
1 TAAA
26189 AAGAGTTTTG
Statistics
Matches: 73, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
16 7 0.10
17 66 0.90
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:26188 original size:11 final size:12
Alignment explanation
Indices: 26142--26189 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
26132 AAATAAATTT
26142 AAATTTAAACT-
1 AAATTTAAACTA
26153 AAATTTAAACTTA
1 AAATTTAAAC-TA
*
26166 AAA--TAAATTA
1 AAATTTAAACTA
26176 AAATTTAAA-TA
1 AAATTTAAACTA
26187 AAA
1 AAA
26190 AGAGTTTTGC
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
10 5 0.16
11 19 0.59
12 5 0.16
13 3 0.09
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (12 bp):
AAATTTAAACTA
Found at i:27376 original size:385 final size:379
Alignment explanation
Indices: 26636--27399 Score: 962
Period size: 385 Copynumber: 2.0 Consensus size: 379
26626 CATTTAAAGA
* * *
26636 GTCTGAAAATGCAGAGTATCCAATTTGTTAAAATGCCAACCATGATACCTGCTCCCTGCCATATT
1 GTCTGAAAATGCAGAGAATCCAATTGGTTAAAA-GCCAACCAAGATACCTGCTCCCTGCCATATT
* **
26701 TGTCTGTTGTTTCCTTTGTAACAATGACTCTAATCTTTCATTGGAATGTTCACTTAAATATTTTC
65 TGTCTGTTGTTTCCATTGTAACAATGACTCTAATCTTTCATTGGAATGTTCACTTAAATATTCGC
* ** * * * * *
26766 AAAAACATTAGTTTTTGTTTTTTTTTTTTAACATTATATACCACTTGTTTTGCATTGTAAACTTT
130 AAAAAAAAAAGTGTTTCTTTTTATTTTTTAACATTATATACCACCTGTTTTGAATTGTAAACTTT
** * * * * *
26831 CACCACAATTCAAGATTCCGATATGCACCGAGTGAGTAAAGGGTGGAAGAAAAATATAGAAAGAG
195 CACCACAATTCAAGATTCAAATAAGCACCGAATGAGTAAAGGGCGGAAGAAAAACATAAAAAGAG
* * * * *
26896 TTTGGGGTGCTTATACAATCATGTCTATTTCCCTTAAAGGCTTTGCTCCTTGTTTTCATCTTCAC
260 TTTGGGATACTTATACAATCATGTCTATTTCCCTAAAAGGCTTCGCTCCTTGTTTTCATCCTCAC
* *
26961 TTTTTATATAAACTATTTTCTTTGATCTTCTCATGTTTCAAGTATTTTGTGTCAT
325 TTTTAATATAAACTATTTTCATTGATCTTCTCATGTTTCAAGTATTTTGTGTCAT
* *
27016 GTCTGAAAATGCAGAGAATCCAATTGGTT-AGAGACCAACCAAGATACCTGCTTCCTAG-CATAT
1 GTCTGAAAATGCAGAGAATCCAATTGGTTAAAAG-CCAACCAAGATACCTGCTCCCT-GCCATAT
** * *
27079 TTGTCTGTTGTTTCCATTGTAATTATGACTCTAATCTTTCATTGGATTGTTCGCTTAAATA-TCG
64 TTGTCTGTTGTTTCCATTGTAACAATGACTCTAATCTTTCATTGGAATGTTCACTTAAATATTCG
*
27143 CAAAAAAAAAAAGTGTTTCTCTTTTATTTTTTAACATTATATATCACCTGTTTTGAATTGTCAAA
129 C-AAAAAAAAAAGTGTTTCT-TTTTATTTTTTAACATTATATACCACCTGTTTTGAATTGT-AAA
* * *** *
27208 -TTTCACCACAATTCAAGTTTTAAATAAGCGTTGAATGATTAAAGGGGCAGCGGAA-ACAAAACA
191 CTTTCACCACAATTCAAGATTCAAATAAGCACCGAATGAGTAAA--GG--GCGGAAGA-AAAACA
* *
27271 TAAAAAGAGTTTAGGGATACTTATACTATCATGTCTTTTTCCCTAAAAGGCTTCGCTCCTTGTTT
251 TAAAAAGAGTTT-GGGATACTTATACAATCATGTCTATTTCCCTAAAAGGCTTCGCTCCTTGTTT
* * **
27336 TCATCCTCACTTTTAATATAAATTGTTTTCATTGATCTTCTTTTGTTTCAAGTATTTTGTGTCA
315 TCATCCTCACTTTTAATATAAACTATTTTCATTGATCTTCTCATGTTTCAAGTATTTTGTGTCA
27400 AGTTTGAGTT
Statistics
Matches: 326, Mismatches: 47, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
378 3 0.01
379 96 0.29
380 97 0.30
381 3 0.01
382 2 0.01
383 1 0.00
384 21 0.06
385 103 0.32
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (379 bp):
GTCTGAAAATGCAGAGAATCCAATTGGTTAAAAGCCAACCAAGATACCTGCTCCCTGCCATATTT
GTCTGTTGTTTCCATTGTAACAATGACTCTAATCTTTCATTGGAATGTTCACTTAAATATTCGCA
AAAAAAAAAGTGTTTCTTTTTATTTTTTAACATTATATACCACCTGTTTTGAATTGTAAACTTTC
ACCACAATTCAAGATTCAAATAAGCACCGAATGAGTAAAGGGCGGAAGAAAAACATAAAAAGAGT
TTGGGATACTTATACAATCATGTCTATTTCCCTAAAAGGCTTCGCTCCTTGTTTTCATCCTCACT
TTTAATATAAACTATTTTCATTGATCTTCTCATGTTTCAAGTATTTTGTGTCAT
Found at i:28475 original size:381 final size:375
Alignment explanation
Indices: 27725--28482 Score: 965
Period size: 378 Copynumber: 2.0 Consensus size: 375
27715 TAAAGTGTCC
* * * * * *
27725 GAAAATGTAGAGTATCCAATTGGTTAAAGGCCAACCATGGTACATGCTTCCAGCCATATTTGTCT
1 GAAAATGCAGAGAATCCAATTGGTTAAAGGCCAACCAAGATACATACTTCCAGCCATATTTATCT
*
27790 GTTTTTCCATTGTAATAATAACTATAATCTTTCATTGAAAATTTTGCTCAAATATTTTCAAAAGC
66 GTTTTTCCATTGTAATAATAACTATAATCTTTCATTGAAAATTTTGCTCAAATATCTTCAAAAGC
* * *
27855 ATTAGTTTTTTTTTTTTTTGAACATAATATACCACTTGTTTTGCATTGTCAACTTTCACCACAAT
131 AATAGTTTTTTTTTTTTTTGAACATAATATACCACTTGTTTTGCATTATCAACTTTCACAACAAT
* * * * *
27920 TCAAGATTCCTATACGCACCGAGTGAATAAAGGCTGGAAGAAAAACATAGAAAGAGTTTGGGGTG
196 TCAAGATTCCTATACGCACCGAATGAAAAAAGGCTGGAAAAAAAACATAAAAAGAGTTTGCGGTG
* * * * *
27985 CTTATACAGTTATGTATATTTCCCTTAAAGGCTTCGCTCCTTGTTCTCATCCTCACTTTTTTATA
261 CTTATACAATCATGTATATTTCCCTTAAAGGCTTCCCTCCTAGTTCTCATCCTCACTTTTTAATA
** * *
28050 TAAACTATTTTCTTTTTTCTTTTTTTTTTCAATTATTTTGTGTCACGTTT
326 TAAACTATTTTCTTTGATCTTTTTTTTTTCAAGTATTTTGTGTCAAGTTT
*
28100 GAAAATGCAGAGAATCCAATTGGTTAGAGGCCAACCAAGATA-ACTACTTCCTA-CCATATTTAT
1 GAAAATGCAGAGAATCCAATTGGTTAAAGGCCAACCAAGATACA-TACTTCC-AGCCATATTTAT
* * * *
28163 CTGTTGTTTCCATTGTAATTATGACTATAATCTTTCATT-ACAAATTTTGTTTAAATATCTTCAC
64 CTGTT-TTTCCATTGTAATAATAACTATAATCTTTCATTGA-AAATTTTGCTCAAATATCTTCA-
* *
28227 AAA-CAATAGTTTTTCTTTTATTTTTTAACATTATATACCACTTGTTTTGCATTATCAACTTTCA
126 AAAGCAATAGTTTTT-TTTT-TTTTTGAACATAATATACCACTTGTTTTGCATTATCAACTTTCA
* * *
28291 TAACAATTCAAGTTTCCTATATGCACCGAATGAAAAAAGAG-TGGCAAAAAAAAACATAAAAAGA
189 CAACAATTCAAGATTCCTATACGCACCGAATGAAAAAAG-GCTGG--AAAAAAAACATAAAAAGA
* * * * *
28355 GTTTTTCGGTGCTTATACAATCATGTCTATTTCCTTTAAAGGCTTCCCTTGC-AGTTTTCATCCT
251 G-TTTGCGGTGCTTATACAATCATGTATATTTCCCTTAAAGGCTTCCC-TCCTAGTTCTCATCCT
* *
28419 CAC-TTTTAATATAAACTGTTTTCTTTGATCTTCTTTTGTTTT-GAGTATTTTGTGTCAAGTTT
314 CACTTTTTAATATAAACTATTTTCTTTGATCTT-TTTT-TTTTCAAGTATTTTGTGTCAAGTTT
28481 GA
1 GA
28483 GTTCTTTAAT
Statistics
Matches: 328, Mismatches: 41, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
374 1 0.00
375 58 0.18
376 61 0.19
377 7 0.02
378 77 0.23
379 1 0.00
380 42 0.13
381 75 0.23
382 6 0.02
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.41
Consensus pattern (375 bp):
GAAAATGCAGAGAATCCAATTGGTTAAAGGCCAACCAAGATACATACTTCCAGCCATATTTATCT
GTTTTTCCATTGTAATAATAACTATAATCTTTCATTGAAAATTTTGCTCAAATATCTTCAAAAGC
AATAGTTTTTTTTTTTTTTGAACATAATATACCACTTGTTTTGCATTATCAACTTTCACAACAAT
TCAAGATTCCTATACGCACCGAATGAAAAAAGGCTGGAAAAAAAACATAAAAAGAGTTTGCGGTG
CTTATACAATCATGTATATTTCCCTTAAAGGCTTCCCTCCTAGTTCTCATCCTCACTTTTTAATA
TAAACTATTTTCTTTGATCTTTTTTTTTTCAAGTATTTTGTGTCAAGTTT
Found at i:36001 original size:9 final size:9
Alignment explanation
Indices: 35989--36031 Score: 50
Period size: 9 Copynumber: 4.4 Consensus size: 9
35979 AAAAGGTTTG
35989 AAAAGAAAAA
1 AAAAG-AAAA
35999 AAAAGAAAA
1 AAAAGAAAA
36008 AAAGGAGAAAA
1 AAA--AGAAAA
*
36019 AGAAGAAAA
1 AAAAGAAAA
36028 AAAA
1 AAAA
36032 ACATGGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
9 16 0.55
10 5 0.17
11 8 0.28
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (9 bp):
AAAAGAAAA
Found at i:36002 original size:10 final size:10
Alignment explanation
Indices: 35989--36032 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
35979 AAAAGGTTTG
35989 AAAAGAAAAA
1 AAAAGAAAAA
35999 AAAAG-AAAA
1 AAAAGAAAAA
*
36008 AAAGGAGAAAA
1 AAAAGA-AAAA
*
36019 AGAAGAAAAA
1 AAAAGAAAAA
36029 AAAA
1 AAAA
36033 CATGGTTTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 8 0.29
10 12 0.43
11 8 0.29
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:40743 original size:96 final size:96
Alignment explanation
Indices: 40576--40750 Score: 221
Period size: 96 Copynumber: 1.8 Consensus size: 96
40566 TTCGATCATC
* ** * *
40576 TCGATTTGAGGAAAGGTTGCACCTAGTGAGTTAAGGCACAAATTTTCAGAATCGAAGATAAGGAA
1 TCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAAATTTTCAGAATCGAAGATAAAGAA
40641 ACATTGCCTCGATTAAGGGTATTCGACTATT
66 ACATTGCCTCGATTAAGGGTATTCGACTATT
* * *
40672 TCGATTTGAAGAAAAATTTCACCTAGTAAGTTAAGGCGCAAATTTT-TGAAACTCGAA-ATAAA-
1 TCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAAATTTTCAG-AA-TCGAAGATAAAG
*
40734 AGAATATTGCCTCGATT
64 A-AACATTGCCTCGATT
40751 TTAAAGTTTT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
95 2 0.03
96 60 0.90
97 5 0.07
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (96 bp):
TCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAAATTTTCAGAATCGAAGATAAAGAA
ACATTGCCTCGATTAAGGGTATTCGACTATT
Found at i:41004 original size:28 final size:28
Alignment explanation
Indices: 40968--41030 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
40958 AAAATGAGAC
*
40968 ATTTCGGATACCCAGGGACAAAATGGTA
1 ATTTTGGATACCCAGGGACAAAATGGTA
* *** *
40996 ATTTTGGATTCTTGGGGGCAAAATGGTA
1 ATTTTGGATACCCAGGGACAAAATGGTA
41024 ATTTTGG
1 ATTTTGG
41031 GAAATTCAAG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.29, C:0.11, G:0.29, T:0.32
Consensus pattern (28 bp):
ATTTTGGATACCCAGGGACAAAATGGTA
Found at i:41051 original size:30 final size:30
Alignment explanation
Indices: 41015--41086 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 30
41005 TCTTGGGGGC
* *
41015 AAAATGGTAATTTTGGGAAATTCAAGGTTA
1 AAAATGGTAATTTTGAGAAATTCAAGGGTA
* * * *
41045 AAAATGG-GATTTTTAGACATTCAGGGGTA
1 AAAATGGTAATTTTGAGAAATTCAAGGGTA
41074 AAAA-GGTAATTTT
1 AAAATGGTAATTTT
41087 TAGAGTTTCG
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
28 2 0.06
29 25 0.74
30 7 0.21
ACGTcount: A:0.39, C:0.04, G:0.24, T:0.33
Consensus pattern (30 bp):
AAAATGGTAATTTTGAGAAATTCAAGGGTA
Found at i:41167 original size:30 final size:29
Alignment explanation
Indices: 41131--41410 Score: 271
Period size: 30 Copynumber: 9.4 Consensus size: 29
41121 ATCTGGGGCC
*
41131 AAAATGGTAATTTTGGAAGTTTCGAGGTTA
1 AAAATGG-AATTTTGGAAGTTTTGAGGTTA
*
41161 AAAATGGTATTTTTGGAAGTTTTGAGGTTA
1 AAAATGG-AATTTTGGAAGTTTTGAGGTTA
*
41191 AAAATGGAACTTTTGGAAGTTTTGGGGTTA
1 AAAATGGAA-TTTTGGAAGTTTTGAGGTTA
* ** *
41221 AAAATGGGATTTTTGGAAG-TTCAAGGGTA
1 AAAAT-GGAATTTTGGAAGTTTTGAGGTTA
* *
41250 AAAATGGAATTGTTGGAAGATTTGGGGTTA
1 AAAATGGAATT-TTGGAAGTTTTGAGGTTA
* *
41280 AAAATGGGATTTTTGGAAGTTTTAAGGTTA
1 AAAAT-GGAATTTTGGAAGTTTTGAGGTTA
* * * *
41310 AAAATAGGATTTTTTGAAGTTCGTG-GGTGA
1 AAAAT-GGAATTTTGGAAGTT-TTGAGGTTA
*
41340 AAAA-GGAAGTTTTGGAAGTTTTGGGGTTA
1 AAAATGGAA-TTTTGGAAGTTTTGAGGTTA
* * *
41369 AAAATGTGATTTTTGGAAGTTTAG-GGGTA
1 AAAATG-GAATTTTGGAAGTTTTGAGGTTA
41398 AAAATGGAATTTT
1 AAAATGGAATTTT
41411 TTGAAAGTTT
Statistics
Matches: 209, Mismatches: 31, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
28 16 0.08
29 47 0.22
30 135 0.65
31 11 0.05
ACGTcount: A:0.33, C:0.01, G:0.29, T:0.37
Consensus pattern (29 bp):
AAAATGGAATTTTGGAAGTTTTGAGGTTA
Found at i:41174 original size:58 final size:57
Alignment explanation
Indices: 41010--41293 Score: 179
Period size: 58 Copynumber: 4.8 Consensus size: 57
41000 TGGATTCTTG
* * *
41010 GGGGCAAAATGGTAATTTTGGGAA-ATTCAAGGTTAAAAATGGGATTTTTAGACATTCA
1 GGGGCAAAATGGTAATTTT-GGAAGTTTCGAGGTTAAAAAT-GGATTTTTAGACATTCT
* * * ** * *
41068 GGGGTAAAAAGGTAATTTT-TAGAGTTTCGAGGTCGAGAATAGAGTTTTTAGACA-TCT
1 GGGGCAAAATGGTAATTTTGGA-AGTTTCGAGGTTAAAAATGGA-TTTTTAGACATTCT
* *
41125 GGGGCCAAAATGGTAATTTTGGAAGTTTCGAGGTTAAAAATGGTATTTTTGGA-AGTTTT
1 GGGG-CAAAATGGTAATTTTGGAAGTTTCGAGGTTAAAAATGG-ATTTTTAGACA-TTCT
** * * * *
41184 GAGGTTAAAAATGG-AACTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGA-AGTTCAA
1 G-GG-GCAAAATGGTAA-TTTTGGAAGTTTCGAGGTTAAAAAT-GGATTTTTAGACA-TTC-T
** *
41245 GGGTAAAAATGG-AATTGTTGGAAGATTT-GGGGTTAAAAATGGGATTTTT
1 GGGGCAAAATGGTAATT-TTGGAAG-TTTCGAGGTTAAAAAT-GGATTTTT
41294 GGAAGTTTTA
Statistics
Matches: 186, Mismatches: 25, Indels: 29
0.77 0.10 0.12
Matches are distributed among these distances:
56 1 0.01
57 10 0.05
58 76 0.41
59 46 0.25
60 50 0.27
61 3 0.02
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (57 bp):
GGGGCAAAATGGTAATTTTGGAAGTTTCGAGGTTAAAAATGGATTTTTAGACATTCT
Found at i:41255 original size:89 final size:88
Alignment explanation
Indices: 41131--41411 Score: 350
Period size: 89 Copynumber: 3.2 Consensus size: 88
41121 ATCTGGGGCC
* * * * *
41131 AAAATGGTAATTTTGGAAGTTTCGAGGTTAAAAATGGTATTTTTGGAAGTTTTGAGGTTAAAAAT
1 AAAATGGGATTTTTGGAAG-TTCGAGGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTTAAAAAT
*
41196 GGAACTTTTGGAAGTTTTGGGGTTA
65 GG-ATTTTTGGAAGTTTTGGGGTTA
* * *
41221 AAAATGGGATTTTTGGAAGTTCAAGGGTAAAAATGGAATTGTTGGAAGATTTGGGGTTAAAAATG
1 AAAATGGGATTTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTTAAAAAT-
**
41286 GGATTTTTGGAAGTTTTAAGGTTA
65 GGATTTTTGGAAGTTTTGGGGTTA
* * * *
41310 AAAATAGGATTTTTTGAAGTTCGTGGGTGAAAAA-GGAAGTTTTGGAAGTTTTGGGGTTAAAAAT
1 AAAATGGGATTTTTGGAAGTTCGAGGGT-AAAAATGGAATTTTTGGAAGTTTTGGGGTTAAAAAT
*
41374 GTGATTTTTGGAAGTTTAGGGG-TA
65 G-GATTTTTGGAAGTTTTGGGGTTA
*
41398 AAAATGGAATTTTT
1 AAAATGGGATTTTT
41412 TGAAAGTTTA
Statistics
Matches: 165, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
88 15 0.09
89 126 0.76
90 24 0.15
ACGTcount: A:0.32, C:0.01, G:0.29, T:0.37
Consensus pattern (88 bp):
AAAATGGGATTTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTTAAAAATG
GATTTTTGGAAGTTTTGGGGTTA
Found at i:41276 original size:59 final size:58
Alignment explanation
Indices: 41131--41420 Score: 300
Period size: 59 Copynumber: 4.9 Consensus size: 58
41121 ATCTGGGGCC
* * * *
41131 AAAATGGTAATTTTGGAAGTTTCGAGGTTAAAAATGGTATTTTTGGAAGTTTTGAGGTTA
1 AAAATGG-AATTTTGGAAGTTT-GGGGTTAAAAATGGAATTTTTGGAAGTTTTAAGGGTA
* *
41191 AAAATGGAACTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGAAG-TTCAAGGGTA
1 AAAATGGAA-TTTTGGAAG-TTTGGGGTTAAAAATGGAATTTTTGGAAGTTTTAAGGGTA
* *
41250 AAAATGGAATTGTTGGAAGATTTGGGGTTAAAAATGGGATTTTTGGAAGTTTTAAGGTTA
1 AAAATGGAATT-TTGGAAG-TTTGGGGTTAAAAATGGAATTTTTGGAAGTTTTAAGGGTA
* * * * * *
41310 AAAATAGGATTTTTTGAAGTTCGTGGGTGAAAAA-GGAAGTTTTGGAAGTTTT-GGGGTTA
1 AAAAT-GGAATTTTGGAAGTTTG-GGGTTAAAAATGGAATTTTTGGAAGTTTTAAGGG-TA
* *
41369 AAAATGTGATTTTTGGAAGTTTAGGGG-TAAAAATGGAATTTTTTGAAAGTTT
1 AAAATG-GAATTTTGGAAGTTT-GGGGTTAAAAATGGAA-TTTTTGGAAGTTT
41421 AGGGACCTTT
Statistics
Matches: 198, Mismatches: 21, Indels: 22
0.82 0.09 0.09
Matches are distributed among these distances:
58 10 0.05
59 100 0.51
60 80 0.40
61 8 0.04
ACGTcount: A:0.32, C:0.01, G:0.29, T:0.37
Consensus pattern (58 bp):
AAAATGGAATTTTGGAAGTTTGGGGTTAAAAATGGAATTTTTGGAAGTTTTAAGGGTA
Found at i:42411 original size:15 final size:15
Alignment explanation
Indices: 42391--42421 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
42381 ATTTTTATTG
42391 ATTATTATTATTAAT
1 ATTATTATTATTAAT
*
42406 ATTATTTTTATTAAT
1 ATTATTATTATTAAT
42421 A
1 A
42422 AAACATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTATTATTATTAAT
Found at i:43161 original size:17 final size:17
Alignment explanation
Indices: 43139--43205 Score: 71
Period size: 18 Copynumber: 3.8 Consensus size: 17
43129 TTTAATTTTG
43139 AAAATAAATTTAAACCT
1 AAAATAAATTTAAACCT
**
43156 AAAATAAATTTAAATTTT
1 AAAATAAATTTAAA-CCT
* * *
43174 TAAACAAATTTAATCCT
1 AAAATAAATTTAAACCT
43191 AAAAATAAATTTAAA
1 -AAAATAAATTTAAA
43206 ATGAGTTTGG
Statistics
Matches: 38, Mismatches: 10, Indels: 3
0.75 0.20 0.06
Matches are distributed among these distances:
17 15 0.39
18 23 0.61
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAATAAATTTAAACCT
Found at i:43162 original size:35 final size:35
Alignment explanation
Indices: 43123--43204 Score: 94
Period size: 35 Copynumber: 2.3 Consensus size: 35
43113 TTATATTTAT
*
43123 AATAATTTTAATTTTGAAAATAAATTTAAACCT-AA
1 AATAATTTTAATTTT-AAAACAAATTTAAACCTAAA
* * *
43158 AATAAATTTAAATTTTTAAACAAATTTAATCCTAAA
1 AAT-AATTTTAATTTTAAAACAAATTTAAACCTAAA
*
43194 AATAAATTTAA
1 AATAATTTTAA
43205 AATGAGTTTG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
35 23 0.59
36 16 0.41
ACGTcount: A:0.54, C:0.06, G:0.01, T:0.39
Consensus pattern (35 bp):
AATAATTTTAATTTTAAAACAAATTTAAACCTAAA
Found at i:43173 original size:36 final size:36
Alignment explanation
Indices: 43126--43205 Score: 108
Period size: 36 Copynumber: 2.2 Consensus size: 36
43116 TATTTATAAT
* *
43126 AATTTTAATTTTGAAAATAAATTTAAACCT-AAAATA
1 AATTTAAATTTT-AAAACAAATTTAAACCTAAAAATA
* *
43162 AATTTAAATTTTTAAACAAATTTAATCCTAAAAATA
1 AATTTAAATTTTAAAACAAATTTAAACCTAAAAATA
43198 AATTTAAA
1 AATTTAAA
43206 ATGAGTTTGG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
35 14 0.36
36 25 0.64
ACGTcount: A:0.54, C:0.06, G:0.01, T:0.39
Consensus pattern (36 bp):
AATTTAAATTTTAAAACAAATTTAAACCTAAAAATA
Found at i:51957 original size:39 final size:39
Alignment explanation
Indices: 51855--52820 Score: 292
Period size: 39 Copynumber: 24.8 Consensus size: 39
51845 GCAGATTGAA
* * * * *
51855 AATCCAATCTTTTACCCCGAGACTGGGGCCAGATCACCATC
1 AATCCGATCTCTTACCCCGAGCCTGGGG-CAGATTA-CAGC
* * * * *
51896 AA-CCAATCTCTTACCCCAAGCCTGGGGCACATTGCGGC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTACAGC
* * * *
51934 AATCCGATCTTTTACCCCGAGCCTGAGGCAGATCACCATC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTA-CAGC
* *
51974 AA-CCAATCTCTTACCCCGAGCCTAGGGCAGATTACAGC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTACAGC
* * ** * * * *
52012 CATCCGATCTTTTACCCTAAGCTTGGGGCATATCACCATC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTA-CAGC
* * ** * * *
52052 -AGCCAATCTCTTACCCTAAGCCTAGGGTAGATTGCAGTC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTACAG-C
* * * * *
52091 -ATTCGATCTCTTACCCCGAGCTTGGGGTAGATCACCATC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTA-CAGC
* * * *
52130 -ATCCAATCTCTTACCTCGAGCCTAGGGCAGATTGCAGTC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTACAG-C
* ** * * * *
52169 -ATTCGATCTCTTACCTAGAGCCTAGGGTAGATCACCGTC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTACAG-C
* * * *
52208 -ATAC-A-ATCTTACCCCGAGCTTGGGGTAGATTACAGC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTACAGC
* * * * * * *
52244 CATTCGATCTCTTACCTCGAGCTTGAGGCAGATCACCATC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTA-CAGC
* * ** * * *
52284 -AGCCAATCTCTTACCCCGAGCCTAAGGTAGATTGCATC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTACAGC
* * * * * * *
52322 CATTCTATCTCTTACCCCGAGCTTGGGGTAGATCATCATC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTA-CAGC
* * * ** * *
52362 -AGCCAATCTTTTACCCCGAGCCTAAGGTAGATTGCAGC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTACAGC
* ** * ** * *
52400 CATTTGATCTCTTACCCAGAGCCTAAAGGCAGATCACCATC
1 AATCCGATCTCTTACCCCGAGCCT-GGGGCAGATTA-CAGC
* * * * * * * *
52441 AA-CCAATCTCTCACCTCGAGCTTGTGACAGATCATCATC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTA-CAGC
* * *
52480 AAT-CAATCTCTTACCCCGAGCTTGGGGCAGATTATAGC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTACAGC
* * * * ** * *
52518 CATCCGATCTTTTACCCTGAGCCTAGGATAGATCACCATC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTA-CAGC
* * * ** * *
52558 -AGCCAATCTCTTACCCCGAGCTTAAGGTAGATTACATC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTACAGC
* * * * * ** * * **
52596 TATTCGATCTCTTACCTCAAGCTTATGGTAGATCACCATT
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTA-CAGC
* * **
52636 AA-CCAATCTCTTACCCCGAGCTTGGGGCAGATTGTAGC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTACAGC
* * * * * *
52674 CATTCGATCTCTTACCCCGAGCCTAGGGCAGGTCATCATC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTA-CAGC
* * * ** *
52714 AA-CCAATCTCTTACCTCGAGCCTGCGATAAATTACAGC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTACAGC
* ** * * ** * *
52752 TATTTGATCTCTTACCCCAAGCTTAAGGCAGATCACCATC
1 AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTA-CAGC
* **
52792 -AGCTAATCTCTTACCCCGAGCCTGGGGCA
1 AATCCGATCTCTTACCCCGAGCCTGGGGCA
52821 AATTGTAGCC
Statistics
Matches: 677, Mismatches: 223, Indels: 52
0.71 0.23 0.05
Matches are distributed among these distances:
36 1 0.00
37 26 0.04
38 35 0.05
39 537 0.79
40 72 0.11
41 6 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (39 bp):
AATCCGATCTCTTACCCCGAGCCTGGGGCAGATTACAGC
Found at i:51976 original size:78 final size:78
Alignment explanation
Indices: 51861--52461 Score: 634
Period size: 78 Copynumber: 7.7 Consensus size: 78
51851 TGAAAATCCA
* * * * * * *
51861 ATCTTTTACCCCGAGACTGGGGCCAGATCACCATCAACCAATCTCTTACCCCAAGCCTGGGGCAC
1 ATCTCTTACCCCGAGCCTGAGG-CAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGGGTAG
* * *
51926 ATTGCGGCAATCCG
65 ATTGCAGCCATTCG
* *
51940 ATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGGGCAGA
1 ATCTCTTACCCCGAGCCTGAGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGGGTAGA
* *
52005 TTACAGCCATCCG
66 TTGCAGCCATTCG
* ** * * * * **
52018 ATCTTTTACCCTAAGCTTGGGGCATATCACCATCAGCCAATCTCTTACCCTAAGCCTAGGGTAGA
1 ATCTCTTACCCCGAGCCTGAGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGGGTAGA
*
52083 TTGCAGTCATTCG
66 TTGCAGCCATTCG
* * * * * *
52096 ATCTCTTACCCCGAGCTTGGGGTAGATCACCATCATCCAATCTCTTACCTCGAGCCTAGGGCAGA
1 ATCTCTTACCCCGAGCCTGAGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGGGTAGA
*
52161 TTGCAGTCATTCG
66 TTGCAGCCATTCG
** * * * *
52174 ATCTCTTACCTAGAGCCT-AGGGTAGATCACCGTCATA-CAA--TCTTACCCCGAGCTTGGGGTA
1 ATCTCTTACCCCGAGCCTGA-GGCAGATCACCATCA-ACCAATCTCTTACCCCGAGCCTAGGGTA
*
52235 GATTACAGCCATTCG
64 GATTGCAGCCATTCG
* * * *
52250 ATCTCTTACCTCGAGCTTGAGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAAGGTAGA
1 ATCTCTTACCCCGAGCCTGAGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGGGTAGA
* *
52315 TTGCATCCATTCT
66 TTGCAGCCATTCG
* * * * * * *
52328 ATCTCTTACCCCGAGCTTGGGGTAGATCATCATCAGCCAATCTTTTACCCCGAGCCTAAGGTAGA
1 ATCTCTTACCCCGAGCCTGAGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGGGTAGA
*
52393 TTGCAGCCATTTG
66 TTGCAGCCATTCG
* * * *
52406 ATCTCTTACCCAGAGCCTAAAGGCAGATCACCATCAACCAATCTCTCACCTCGAGC
1 ATCTCTTACCCCGAGCCT-GAGGCAGATCACCATCAACCAATCTCTTACCCCGAGC
52462 TTGTGACAGA
Statistics
Matches: 444, Mismatches: 71, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
76 62 0.14
77 1 0.00
78 332 0.75
79 49 0.11
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (78 bp):
ATCTCTTACCCCGAGCCTGAGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGGGTAGA
TTGCAGCCATTCG
Found at i:52487 original size:118 final size:117
Alignment explanation
Indices: 51858--52580 Score: 412
Period size: 117 Copynumber: 6.2 Consensus size: 117
51848 GATTGAAAAT
* * * * * **
51858 CCAATCTTTTACCCCGAGACTGGGGCCAGATCACCATCAACCAATCTCTTACCCCAAGCCTGGGG
1 CCAATCTCTTACCCCGAG-CTTGGGACAGATCATCATCAACCAATCTCTTACCCCGAGCCTAAGG
* * * * * *
51923 CACATTGCGGCAATCCGATCTTTTACCCCGAGCCTGAGG-CAGATCACCATCAA
65 CAGATTACAGCCATCCGATCTCTTACCCAGAGCCT-AGGACAGATCACCATCAA
* * * * * * ** * **
51976 CCAATCTCTTACCCCGAGCCTAGGG-CAGATTA-CAGCCATCCGATCTTTTACCCTAAGCTTGGG
1 CCAATCTCTTACCCCGAG-CTTGGGACAGATCATCA-TCAACCAATCTCTTACCCCGAGCCTAAG
* * * * * ** ** *
52039 GCATATCACCA-TCAGCCAATCTCTTACCCTA-AGCCTAGGGTAGAT-TGCAGTCAT
64 GCAGATTA-CAGCCATCCGATCTCTTACCC-AGAGCCTAGGACAGATCACCA-TCAA
* * ** * * * *
52093 TCGATCTCTTACCCCGAGCTTGGGGTAGATCACCATCATCCAATCTCTTACCTCGAGCCTAGGGC
1 CCAATCTCTTACCCCGAGCTTGGGACAGATCATCATCAACCAATCTCTTACCCCGAGCCTAAGGC
* * * * ** *
52158 AGATTGCAGTCATTCGATCTCTTACCTAGAGCCTAGGGTAGATCACCGTCATA
66 AGATTACAGCCATCCGATCTCTTACCCAGAGCCTAGGACAGATCACCATCA-A
** * * ** * * * *
52211 -CAA--TCTTACCCCGAGCTTGGGGTAGATTA-CAGCCATTCGATCTCTTACCTCGAGCTTGAGG
1 CCAATCTCTTACCCCGAGCTTGGGACAGATCATCA-TCAACCAATCTCTTACCCCGAGCCTAAGG
* * * * * * ** *
52272 CAGATCACCA-TCAGCCAATCTCTTACCCCGAGCCTAAGG-TAGAT-TGCATCCAT
65 CAGATTA-CAGCCATCCGATCTCTTACCCAGAGCCT-AGGACAGATCACCAT-CAA
* * ** * * *
52325 TCTATCTCTTACCCCGAGCTTGGGGTAGATCATCATCAGCCAATCTTTTACCCCGAGCCTAAGGT
1 CCAATCTCTTACCCCGAGCTTGGGACAGATCATCATCAACCAATCTCTTACCCCGAGCCTAAGGC
* **
52390 AGATTGCAGCCATTTGATCTCTTACCCAGAGCCTAAAGG-CAGATCACCATCAA
66 AGATTACAGCCATCCGATCTCTTACCCAGAGCCT--AGGACAGATCACCATCAA
* * * * * **
52443 CCAATCTCTCACCTCGAGCTTGTGACAGATCATCATCAATCAATCTCTTACCCCGAGCTTGGGGC
1 CCAATCTCTTACCCCGAGCTTGGGACAGATCATCATCAACCAATCTCTTACCCCGAGCCTAAGGC
* * * * *
52508 AGATTATAGCCATCCGATCTTTTACCCTGAGCCTAGGATAGATCACCATCAG
66 AGATTACAGCCATCCGATCTCTTACCCAGAGCCTAGGACAGATCACCATCAA
52560 CCAATCTCTTACCCCGAGCTT
1 CCAATCTCTTACCCCGAGCTT
52581 AAGGTAGATT
Statistics
Matches: 468, Mismatches: 114, Indels: 47
0.74 0.18 0.07
Matches are distributed among these distances:
114 4 0.01
115 82 0.18
116 25 0.05
117 237 0.51
118 117 0.25
119 3 0.01
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (117 bp):
CCAATCTCTTACCCCGAGCTTGGGACAGATCATCATCAACCAATCTCTTACCCCGAGCCTAAGGC
AGATTACAGCCATCCGATCTCTTACCCAGAGCCTAGGACAGATCACCATCAA
Found at i:52497 original size:196 final size:195
Alignment explanation
Indices: 51884--52659 Score: 539
Period size: 196 Copynumber: 4.0 Consensus size: 195
51874 AGACTGGGGC
* ** * * * * *
51884 CAGATCACCATCAACCAATCTCTTACCCCAAGCCTGGGGCACATTGCGGCAATCCGATCTTTTAC
1 CAGATCACCATCAACCAATCTCTTACCCCGAGCCTAAGGCAGATTACAGCCATCCGATCTCTTAC
* * * *
51949 CCCGAGCCTGAGG-CAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGGGCAGATTACAGCC
66 CCCGAGCCT-AGGATAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAAGGTAGATTACAGCC
* * *** * * * *
52013 ATCCGATCTTTTACC-CTAAGCTTGGGGCATATCACCATCAGCCAATCTCTTACC-CTAAGCCT-
130 ATTCGATCTCTTACCTC-AAGCTAAAGGCAGATCACCATCAACCAATCTCTTACCTC-GAGCTTG
*
52075 AGGG
193 A-GA
* ** ** * * ** * * * *
52079 TAGAT-TGCAGTCATTCGATCTCTTACCCCGAGCTTGGGGTAGATCACCA-TCATCCAATCTCTT
1 CAGATCACCA-TCAACCAATCTCTTACCCCGAGCCTAAGGCAGATTA-CAGCCATCCGATCTCTT
* ** ** ** * ** * * *
52142 ACCTCGAGCCTAGGGCAGAT-TGCAGTCATTCGATCTCTTACCTAGAGCCTAGGGTAGATCACCG
64 ACCCCGAGCCTAGGATAGATCACCA-TCAGCCAATCTCTTACCCCGAGCCTAAGGTAGATTACAG
* * * * * *** * * * ** *
52206 TCATAC-A-ATCTTACCCCGAGCTTGGGGTAGATTA-CAGCCATTCGATCTCTTACCTCGAGCTT
128 CCATTCGATCTCTTACCTCAAGCTAAAGGCAGATCACCA-TCAACCAATCTCTTACCTCGAGCTT
*
52268 GAGG
192 GAGA
* * * * * *
52272 CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAAGGTAGATTGCATCCATTCTATCTCTTAC
1 CAGATCACCATCAACCAATCTCTTACCCCGAGCCTAAGGCAGATTACAGCCATCCGATCTCTTAC
* * * * * *
52337 CCCGAGCTTGGGGTAGATCATCATCAGCCAATCTTTTACCCCGAGCCTAAGGTAGATTGCAGCCA
66 CCCGAGCCTAGGATAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAAGGTAGATTACAGCCA
* * *
52402 TTTGATCTCTTACC-CAGAGCCTAAAGGCAGATCACCATCAACCAATCTCTCACCTCGAGCTTGT
131 TTCGATCTCTTACCTCA-AG-CTAAAGGCAGATCACCATCAACCAATCTCTTACCTCGAGCTTGA
52466 GA
194 GA
* * * ** * *
52468 CAGATCATCATCAATCAATCTCTTACCCCGAGCTTGGGGCAGATTATAGCCATCCGATCTTTTAC
1 CAGATCACCATCAACCAATCTCTTACCCCGAGCCTAAGGCAGATTACAGCCATCCGATCTCTTAC
* * * *
52533 CCTGAGCCTAGGATAGATCACCATCAGCCAATCTCTTACCCCGAGCTTAAGGTAGATTACATCTA
66 CCCGAGCCTAGGATAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAAGGTAGATTACAGCCA
* * * * *
52598 TTCGATCTCTTACCTCAAGCTTATGGTAGATCACCATTAACCAATCTCTTACCCCGAGCTTG
131 TTCGATCTCTTACCTCAAGCTAAAGGCAGATCACCATCAACCAATCTCTTACCTCGAGCTTG
52660 GGGCAGATTG
Statistics
Matches: 445, Mismatches: 119, Indels: 34
0.74 0.20 0.06
Matches are distributed among these distances:
192 4 0.01
193 129 0.29
194 17 0.04
195 137 0.31
196 154 0.35
197 4 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (195 bp):
CAGATCACCATCAACCAATCTCTTACCCCGAGCCTAAGGCAGATTACAGCCATCCGATCTCTTAC
CCCGAGCCTAGGATAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAAGGTAGATTACAGCCA
TTCGATCTCTTACCTCAAGCTAAAGGCAGATCACCATCAACCAATCTCTTACCTCGAGCTTGAGA
Found at i:52628 original size:274 final size:273
Alignment explanation
Indices: 52214--52734 Score: 740
Period size: 274 Copynumber: 1.9 Consensus size: 273
52204 CGTCATACAA
* * *
52214 TCTTACCCCGAGCTTGGGGTAGATTACAGCCATTCGATCTCTTACCTCGAGCTTGAGGCAGATCA
1 TCTTACCCCGAGCTTGGGGCAGATTACAGCCATCCGATCTCTTACCTCGAGCCTGAGGCAGATCA
* * *
52279 CCATCAGCCAATCTCTTACCCCGAGCCTAAGGTAGATTGCATCCATTCTATCTCTTACCCCGAGC
66 CCATCAGCCAATCTCTTACCCCGAGCCTAAGGTAGATTACATCCATTCGATCTCTTACCCCAAGC
* * * * * *
52344 TTGGGGTAGATCATCATCAGCCAATCTTTTACCCCGAGCCTAAGGTAGATTGCAGCCATTTGATC
131 TTAGGGTAGATCACCATCAACCAATCTCTTACCCCGAGCCTAAGGCAGATTGCAGCCATTCGATC
52409 TCTTACCCAGAGCCTAAAGGCAGATCACCATCAACCAATCTCTCACCTCGAGCTTGTGACAGATC
196 TCTTACCCAGAGCCT-AAGGCAGATCACCATCAACCAATCTCTCACCTCGAGCTTGTGACAGATC
52474 ATCATCAATCAATC
260 ATCATCAATCAATC
* * *
52488 TCTTACCCCGAGCTTGGGGCAGATTATAGCCATCCGATCTTTTACC-CTGAGCCT-AGGATAGAT
1 TCTTACCCCGAGCTTGGGGCAGATTACAGCCATCCGATCTCTTACCTC-GAGCCTGAGG-CAGAT
* * *
52551 CACCATCAGCCAATCTCTTACCCCGAGCTTAAGGTAGATTACATCTATTCGATCTCTTACCTCAA
64 CACCATCAGCCAATCTCTTACCCCGAGCCTAAGGTAGATTACATCCATTCGATCTCTTACCCCAA
* * * ** *
52616 GCTTATGGTAGATCACCATTAACCAATCTCTTACCCCGAGCTTGGGGCAGATTGTAGCCATTCGA
129 GCTTAGGGTAGATCACCATCAACCAATCTCTTACCCCGAGCCTAAGGCAGATTGCAGCCATTCGA
* * * * *
52681 TCTCTTACCCCGAGCCTAGGGCAGGTCATCATCAACCAATCTCTTACCTCGAGC
194 TCTCTTACCCAGAGCCTAAGGCAGATCACCATCAACCAATCTCTCACCTCGAGC
52735 CTGCGATAAA
Statistics
Matches: 216, Mismatches: 29, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
273 37 0.17
274 179 0.83
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (273 bp):
TCTTACCCCGAGCTTGGGGCAGATTACAGCCATCCGATCTCTTACCTCGAGCCTGAGGCAGATCA
CCATCAGCCAATCTCTTACCCCGAGCCTAAGGTAGATTACATCCATTCGATCTCTTACCCCAAGC
TTAGGGTAGATCACCATCAACCAATCTCTTACCCCGAGCCTAAGGCAGATTGCAGCCATTCGATC
TCTTACCCAGAGCCTAAGGCAGATCACCATCAACCAATCTCTCACCTCGAGCTTGTGACAGATCA
TCATCAATCAATC
Found at i:52904 original size:39 final size:39
Alignment explanation
Indices: 51858--52934 Score: 192
Period size: 39 Copynumber: 27.6 Consensus size: 39
51848 GATTGAAAAT
* * * * *
51858 CCAATCTTTTACCCCGAGACTGGGGCCAGATCACCATCAA
1 CCAATCTCTTACCTCGAGCCTGGGG-CAAATCACCATCAG
* * * ** *
51898 CCAATCTCTTACCCCAAGCCTGGGGCACATTGCGGCA--AT
1 CCAATCTCTTACCTCGAGCCTGGGGCA-AAT-CACCATCAG
* * * * * *
51937 CCGATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAA
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCATCAG
* * * * * *
51976 CCAATCTCTTACCCCGAGCCTAGGGCAGATTA-CAGCCAT
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCA-TCAG
* * * * *
52015 CCGATCTTTTACC-CTAAGCTTGGGGCATATCACCATCAG
1 CCAATCTCTTACCTC-GAGCCTGGGGCAAATCACCATCAG
* * * * ** *
52054 CCAATCTCTTACC-CTAAGCCTAGGGTAGAT-TGCAGTCAT
1 CCAATCTCTTACCTC-GAGCCTGGGGCAAATCACCA-TCAG
* * * * * * *
52093 TCGATCTCTTACCCCGAGCTTGGGGTAGATCACCATCAT
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCATCAG
* * ** *
52132 CCAATCTCTTACCTCGAGCCTAGGGCAGAT-TGCAGTCAT
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCA-TCAG
* * * * * * * *
52171 TCGATCTCTTACCTAGAGCCTAGGGTAGATCACCGTCAT
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCATCAG
* * * * * * * *
52210 ACAA--TCTTACCCCGAGCTTGGGGTAGATTA-CAGCCAT
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCA-TCAG
* * * * *
52247 TCGATCTCTTACCTCGAGCTTGAGGCAGATCACCATCAG
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCATCAG
* ** * * ** *
52286 CCAATCTCTTACCCCGAGCCTAAGGTAGAT-TGCATCCAT
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCAT-CAG
* * * * * * *
52325 TCTATCTCTTACCCCGAGCTTGGGGTAGATCATCATCAG
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCATCAG
* * ** * * **
52364 CCAATCTTTTACCCCGAGCCTAAGGTAGATTGCAGCCATTTG
1 CCAATCTCTTACCTCGAGCCTGGGGCA-AAT-CA-CCATCAG
** * *
52406 ---ATCTCTTACC-CAGAGCCTAAAGGCAGATCACCATCAA
1 CCAATCTCTTACCTC-GAGCCT-GGGGCAAATCACCATCAG
* * * * * * *
52443 CCAATCTCTCACCTCGAGCTTGTGACAGATCATCATCAA
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCATCAG
* * * * * * * *
52482 TCAATCTCTTACCCCGAGCTTGGGGCAGATTA-TAGCCAT
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCA-TCAG
* * * ** *
52521 CCGATCTTTTACC-CTGAGCCTAGGATAGATCACCATCAG
1 CCAATCTCTTACCTC-GAGCCTGGGGCAAATCACCATCAG
* * ** * * * *
52560 CCAATCTCTTACCCCGAGCTTAAGGTAGATTA-CATCTAT
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCATC-AG
* * * * ** * * * *
52599 TCGATCTCTTACCTCAAGCTTATGGTAGATCACCATTAA
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCATCAG
* * * *
52638 CCAATCTCTTACCCCGAGCTTGGGGCAGATTGTAGCCATTC-G
1 CCAATCTCTTACCTCGAGCCTGGGGCA-AAT-CA-CCA-TCAG
* * ** * *
52680 ---ATCTCTTACCCCGAGCCTAGGGCAGGTCATCATCAA
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCATCAG
* ** * * *
52716 CCAATCTCTTACCTCGAGCCTGCGATAAATTA-CAGCTAT
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCATC-AG
*** * * * ** *
52755 TTGATCTCTTACCCCAAGCTTAAGGCAGATCACCATCAG
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCATCAG
* * * **
52794 CTAATCTCTTACCCCGAGCCTGGGGCAAATTGTAGCCATTTG
1 CCAATCTCTTACCTCGAGCCTGGGGCAAA-T-CA-CCATCAG
* * * ** *
52836 ---ATCTTTTACCTCAAGCTTTAGGCAGATCACCATCAG
1 CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCATCAG
52872 CCAATCTCTTACC-CTGAGCCTGGGGCAAATCACCATCAG
1 CCAATCTCTTACCTC-GAGCCTGGGGCAAATCACCATCAG
52911 CCAATCTCTTACCTCGAGCCTGGG
1 CCAATCTCTTACCTCGAGCCTGGG
52935 TCAGATTGCA
Statistics
Matches: 760, Mismatches: 226, Indels: 103
0.70 0.21 0.09
Matches are distributed among these distances:
35 2 0.00
36 8 0.01
37 35 0.05
38 26 0.03
39 603 0.79
40 65 0.09
41 8 0.01
42 12 0.02
43 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (39 bp):
CCAATCTCTTACCTCGAGCCTGGGGCAAATCACCATCAG
Found at i:52940 original size:78 final size:79
Alignment explanation
Indices: 51856--52962 Score: 535
Period size: 78 Copynumber: 14.2 Consensus size: 79
51846 CAGATTGAAA
* * * *
51856 ATCCAATCTTTTACCCCGAGACTGGGGCCAGATCACCATCAACCAATCTCTTACCCCAAGCCT-G
1 ATCCAATCTCTTACCCCGAGCCTGGGG-CAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAG
* * **
51920 GGGCACATTGCGGCA--
65 GGTCAGA-T-CACCATC
* * * *
51935 ATCCGATCTTTTACCCCGAGCCTGAGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTAGG
1 ATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGG
* *
52000 G-CAGATTA-CAGCC
66 GTCAGATCACCA-TC
* * ** * * **
52013 ATCCGATCTTTTACCCTAAGCTTGGGGCATATCACCATCAGCCAATCTCTTACCCTAAGCCTAGG
1 ATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGG
**
52078 GT-AGAT-TGCAGTC
66 GTCAGATCACCA-TC
* * * * * *
52091 ATTCGATCTCTTACCCCGAGCTTGGGGTAGATCACCATCATCCAATCTCTTACCTCGAGCCTAGG
1 ATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGG
**
52156 G-CAGAT-TGCAGTC
66 GTCAGATCACCA-TC
* * ** * * * ** * *
52169 ATTCGATCTCTTACCTAGAGCCTAGGGTAGATCACCGTCATACAA--TCTTACCCCGAGCTTGGG
1 ATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGG
* *
52232 GT-AGATTA-CAGCC
66 GTCAGATCACCA-TC
* * * * * *
52245 ATTCGATCTCTTACCTCGAGCTTGAGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAAG
1 ATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGG
**
52310 GT-AGAT-TGCATCC
66 GTCAGATCACCAT-C
* * * * * * *
52323 ATTCTATCTCTTACCCCGAGCTTGGGGTAGATCATCATCAGCCAATCTTTTACCCCGAGCCTAAG
1 ATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGG
52388 GT-AGATTGCAGCCAT-
66 GTCAGA-T-CA-CCATC
** * ** * * * *
52403 -T-TGATCTCTTACCCAGAGCCTAAAGGCAGATCACCATCAACCAATCTCTCACCTCGAG-CTTG
1 ATCCAATCTCTTACCCCGAGCCT-GGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAG
* * *
52465 TGACAGATCATCATC
65 GGTCAGATCACCATC
* * * * * * * *
52480 AAT-CAATCTCTTACCCCGAGCTTGGGGCAGATTA-TAGCCATCCGATCTTTTACCCTGAGCCTA
1 -ATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCA-TCAGCCAATCTCTTACCCCGAGCCTA
*
52543 GGAT-AGATCACCATC
64 GGGTCAGATCACCATC
* * ** * * ** * * * * *
52558 AGCCAATCTCTTACCCCGAGCTTAAGGTAGATTA-CATCTATTCGATCTCTTACCTCAAGCTTAT
1 ATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATC-AGCCAATCTCTTACCCCGAGCCTAG
*
52622 GGT-AGATCACCATT
65 GGTCAGATCACCATC
* * *
52636 AACCAATCTCTTACCCCGAGCTTGGGGCAGATTGTAGCCATTC-G---ATCTCTTACCCCGAGCC
1 ATCCAATCTCTTACCCCGAGCCTGGGGCAGA-T-CA-CCA-TCAGCCAATCTCTTACCCCGAGCC
* *
52697 TAGGG-CAGGTCATCATC
62 TAGGGTCAGATCACCATC
* * * ** * * * **** * * *
52714 AACCAATCTCTTACCTCGAGCCTGCGATAAATTA-CAGCTATTTGATCTCTTACCCCAAGCTTAA
1 ATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATC-AGCCAATCTCTTACCCCGAGCCTAG
52778 GG-CAGATCACCATC
65 GGTCAGATCACCATC
* * * * ** * * * *
52792 AGCTAATCTCTTACCCCGAGCCTGGGGCAAATTGTAGCCATTTG---ATCTTTTACCTCAAGCTT
1 ATCCAATCTCTTACCCCGAGCCTGGGGCAGA-T-CA-CCATCAGCCAATCTCTTACCCCGAGC-C
52854 TA-GG-CAGATCACCATC
62 TAGGGTCAGATCACCATC
* * * *
52870 AGCCAATCTCTTACCCTGAGCCTGGGGCAAATCACCATCAGCCAATCTCTTACCTCGAGCCT-GG
1 ATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGG
** *
52934 GTCAGATTGCAATC
66 GTCAGATCACCATC
*
52948 ATCCAATATCTTACC
1 ATCCAATCTCTTACC
52963 TAAAAAAAAA
Statistics
Matches: 820, Mismatches: 161, Indels: 95
0.76 0.15 0.09
Matches are distributed among these distances:
73 1 0.00
74 2 0.00
75 7 0.01
76 67 0.08
77 11 0.01
78 634 0.77
79 85 0.10
80 4 0.00
82 7 0.01
83 2 0.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (79 bp):
ATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCCTAGG
GTCAGATCACCATC
Found at i:52954 original size:39 final size:40
Alignment explanation
Indices: 52856--52963 Score: 121
Period size: 39 Copynumber: 2.8 Consensus size: 40
52846 TCAAGCTTTA
* *
52856 GGCAGATCACCATCAGCCAATCTCTTACC-CTGAGCCTGG
1 GGCAAATCACAATCAGCCAATCTCTTACCTCTGAGCCTGG
*
52895 GGCAAATCACCATCAGCCAATCTCTTACCTC-GAGCCTGG
1 GGCAAATCACAATCAGCCAATCTCTTACCTCTGAGCCTGG
* * ** * *
52934 GTCAGATTGCAATCATCCAATATCTTACCT
1 GGCAAATCACAATCAGCCAATCTCTTACCT
52964 AAAAAAAAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
39 59 0.98
40 1 0.02
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (40 bp):
GGCAAATCACAATCAGCCAATCTCTTACCTCTGAGCCTGG
Found at i:53453 original size:17 final size:17
Alignment explanation
Indices: 53431--53463 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
53421 AAATTTTAAT
53431 TTATTTT-AAGTTTAAAA
1 TTATTTTGAA-TTTAAAA
53448 TTATTTTGAATTTAAA
1 TTATTTTGAATTTAAA
53464 TTTAACTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
TTATTTTGAATTTAAAA
Found at i:55117 original size:18 final size:18
Alignment explanation
Indices: 55094--55134 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
55084 AAAGCCCCTA
55094 TTTTCTTTAAAATCACAT
1 TTTTCTTTAAAATCACAT
55112 TTTTCTTTAAAATCACAT
1 TTTTCTTTAAAATCACAT
55130 TTTTC
1 TTTTC
55135 CCCCGAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTCTTTAAAATCACAT
Found at i:55161 original size:29 final size:29
Alignment explanation
Indices: 55120--55536 Score: 267
Period size: 29 Copynumber: 14.4 Consensus size: 29
55110 ATTTTTCTTT
* *
55120 AAAATCACATTTTT-CCCCCGAACTTCTT
1 AAAATTACATTTTTACCCCCGAACTTCTA
*
55148 AAAATTATATTTTTACCCCCGAACTTCTTA
1 AAAATTACATTTTTACCCCCGAACTTC-TA
* * * ** *
55178 AAAAATATATTTTTACTCCTAAACTTCCA
1 AAAATTACATTTTTACCCCCGAACTTCTA
* ** *
55207 AAAATCACATTTTTACCCCTAAACTTCCA
1 AAAATTACATTTTTACCCCCGAACTTCTA
* * *
55236 AAAATCACATTTTTACCCTCGAACTTTTA
1 AAAATTACATTTTTACCCCCGAACTTCTA
* *
55265 AAAATCACATTTTTACCCTCGAACTTCTCA
1 AAAATTACATTTTTACCCCCGAACTTCT-A
* * *
55295 AAAATTACTTTTTTACCCTCGAACTTCCA
1 AAAATTACATTTTTACCCCCGAACTTCTA
* * * *
55324 AACATTACATTTTTGCCCCTGAACTTCCA
1 AAAATTACATTTTTACCCCCGAACTTCTA
* *
55353 AAAATCACATTTTTA--CCCTAACTTCTTA
1 AAAATTACATTTTTACCCCCGAACTTC-TA
* * ** *
55381 AAAAATACATTTTTGCCTTCAAACTT-TCA
1 AAAATTACATTTTTACCCCCGAACTTCT-A
* *
55410 AAAATTACA-TTTTGCCCTCGAACTT-TGA
1 AAAATTACATTTTTACCCCCGAACTTCT-A
* * * **
55438 AAAATCAC-TTTTTA-CCCTGAATTTTCCC
1 AAAATTACATTTTTACCCCCGAA-CTTCTA
**** * *
55466 AAAATTACATTTTTACCTATAAACTTTTT
1 AAAATTACATTTTTACCCCCGAACTTCTA
* * *
55495 GAAATTACATTTTAACCCCCGAACTCTCCA
1 AAAATTACATTTTTACCCCCGAACT-TCTA
*
55525 AAACTT-CATTTT
1 AAAATTACATTTT
55537 CGACCTTTTT
Statistics
Matches: 308, Mismatches: 68, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
27 13 0.04
28 62 0.20
29 168 0.55
30 65 0.21
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (29 bp):
AAAATTACATTTTTACCCCCGAACTTCTA
Found at i:55248 original size:88 final size:87
Alignment explanation
Indices: 55120--55455 Score: 341
Period size: 88 Copynumber: 3.9 Consensus size: 87
55110 ATTTTTCTTT
* ** *
55120 AAAATCACATTTTTCCCC-CGAACTTCTTAAAATTATATTTTTACCCCCGAACTTCTTAAAAAAT
1 AAAATCACATTTTTCCCCTCAAACTTCCAAAAATTACATTTTTACCCCCGAACTTCTT-AAAAAT
*
55184 -ATATTTTTACTCCTAAACTTC-CA
65 CACATTTTTAC-CCT-AACTTCTCA
* *
55207 AAAATCACATTTTTACCCCT-AAACTTCCAAAAATCACATTTTTACCCTCGAACTT-TTAAAAAT
1 AAAATCACATTTTT-CCCCTCAAACTTCCAAAAATTACATTTTTACCCCCGAACTTCTTAAAAAT
55270 CACATTTTTACCCTCGAACTTCTCA
65 CACATTTTTACCCT--AACTTCTCA
* * * * * * * *
55295 AAAATTACTTTTTTACCCTCGAACTTCCAAACATTACATTTTTGCCCCTGAACTTC-CAAAAATC
1 AAAATCACATTTTTCCCCTCAAACTTCCAAAAATTACATTTTTACCCCCGAACTTCTTAAAAATC
*
55359 ACATTTTTACCCTAACTTCTTAA
66 ACATTTTTACCCTAACTTC-TCA
* * * * * *
55382 AAAAT-ACATTTTTGCCTTCAAACTTTCAAAAATTACA-TTTTGCCCTCGAACTT-TGAAAAATC
1 AAAATCACATTTTTCCCCTCAAACTTCCAAAAATTACATTTTTACCCCCGAACTTCTTAAAAATC
55444 AC-TTTTTACCCT
66 ACATTTTTACCCT
55456 GAATTTTCCC
Statistics
Matches: 212, Mismatches: 28, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
84 10 0.05
85 23 0.11
86 41 0.19
87 42 0.20
88 96 0.45
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (87 bp):
AAAATCACATTTTTCCCCTCAAACTTCCAAAAATTACATTTTTACCCCCGAACTTCTTAAAAATC
ACATTTTTACCCTAACTTCTCA
Found at i:55288 original size:117 final size:117
Alignment explanation
Indices: 55120--55527 Score: 390
Period size: 117 Copynumber: 3.5 Consensus size: 117
55110 ATTTTTCTTT
* * * *
55120 AAAATCACATTTTT-CCCCCGAACTTCTTAAAATTATATTTTTACCCCCGAACTTCTTAAAAAAT
1 AAAATCACATTTTTACCCTCGAACTTCTTAAAAATACATTTTTACCCCCGAACTTCTCAAAAAAT
55184 A-TATTTTTACTCCT-AAACTTCCAAAAATCACATTTTTACCCCTAAACTTCCA
66 ACT-TTTTTAC-CCTCAAACTTCCAAAAATCACATTTTTACCCCTAAACTTCCA
* *
55236 AAAATCACATTTTTACCCTCGAACTT-TTAAAAATCACATTTTTACCCTCGAACTTCTCAAAAAT
1 AAAATCACATTTTTACCCTCGAACTTCTTAAAAAT-ACATTTTTACCCCCGAACTTCTCAAAAAA
* * * * *
55300 TACTTTTTTACCCTCGAACTTCCAAACATTACATTTTTGCCCCTGAACTTCCA
65 TACTTTTTTACCCTCAAACTTCCAAAAATCACATTTTTACCCCTAAACTTCCA
* ** * *
55353 AAAATCACATTTTTACCCT--AACTTCTTAAAAAATACATTTTTGCCTTCAAACTT-TCAAAAAT
1 AAAATCACATTTTTACCCTCGAACTTCTT-AAAAATACATTTTTACCCCCGAACTTCTCAAAAAA
* * * ** ** *
55415 TAC-ATTTTGCCCTCGAACTTTGAAAAATCAC-TTTTTA-CCCTGAATTTTCCC
65 TACTTTTTTACCCTCAAACTTCCAAAAATCACATTTTTACCCCT-AAACTTCCA
* ** * * * * *
55466 AAAATTACATTTTTA-CCTATAAACTTTTTGAAATTACATTTTAACCCCCGAAC-TCTCCAAAA
1 AAAATCACATTTTTACCCT-CGAACTTCTTAAAAATACATTTTTACCCCCGAACTTCTCAAAAA
55528 CTTCATTTTC
Statistics
Matches: 246, Mismatches: 35, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
112 7 0.03
113 25 0.10
114 45 0.18
115 23 0.09
116 43 0.17
117 102 0.41
118 1 0.00
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (117 bp):
AAAATCACATTTTTACCCTCGAACTTCTTAAAAATACATTTTTACCCCCGAACTTCTCAAAAAAT
ACTTTTTTACCCTCAAACTTCCAAAAATCACATTTTTACCCCTAAACTTCCA
Found at i:60464 original size:958 final size:955
Alignment explanation
Indices: 58208--60893 Score: 3641
Period size: 958 Copynumber: 2.8 Consensus size: 955
58198 CCACTCTGCA
* * * *
58208 TATCTGAAACTTGAGTTGTGGTGAAATTTTGACAATGCAAAATAAGTGATAAATAAGGTTTAAAA
1 TATCTGAAACTTGAATTGTGGTGAAA-TTTGACAATGCAAAACAAGTGATAAATAATGTTAAAAA
* * * * * *
58273 ATAAAAGAGAAACACATGTTTTTGGAGATATTTAAGCGAACTTTTCGTTCAAAGATTAGAGTCAT
65 ATAAAAGAGAAACACATGTTTTTAGTGATATTTAAGCAAACTTTCCATTGAAAGATTAGAGTCAT
*
58338 AATTACAATGGAAACAACAGACAAATATGCTAGGAAGCAGGTATCTTGGTTAGCCTCTAACCAAT
130 AATTACAATGGAAACAACAGACAAATATGCTAGGAAGCA-GTATCTTGGTTGGCCTCTAACCAAT
*
58403 TGGATACTCTGCATTTTATGACTTGATACAAAATACTTGAAACAAAAGATGATCAAAGAAAATAG
194 TGGATACTCTGCATTTTATGACTTGACACAAAATACTTGAAACAAAAGATGATCAAAGAAAATAG
* ** * *
58468 TTTTTATCGAAAGTGAGGTTGAAAACAAAGAGCGAAGGCTTTAAGAGAAATAGACACGATTGTAT
259 TTTATATCGAAAGTGAGGTTGAAAACAGGGAGCGAAGCCTTTAAGAGAAATAGACATGATTGTAT
* *
58533 AAGCACCCCCAAACTCTTTTTATGTTTTG-TTTCCCC-TCGTTTTTCACTCGATGCATATTTGAA
324 AAGCA-CCCCAAACTCTTTTTATGTTTTGTTTTCCCCTTC--TTTTCACTCGATGCGTATATGAA
* * * *
58596 ACTTGAATTGTGGTGAAAGCTGACAATACAAAACAAGTGGTATATAATATTAAAAAAGAAAAGAC
386 ACTTGAATTGTGGTGAAAGTTGACAATGCAAAACAAGTGGTATATAATGTTAAAAAATAAAAGA-
* * * * *
58661 AAAAACTAACGTTTTTGAAGATATTTAAGCAAAAATTTCAATGAAAGATTAAAGTAATAATTACA
450 AAAAACTAATGTTTTTGAAAATATTTAAGC-GAAATTTCAATGAAAGATTAGAGTCATAATTACA
** *
58726 ATGGAAACAATAGACAAATATTATAGGAAATATGTATCATGGTTCGCCTCTAAGAAATCT-GATA
514 ATGGAAACAATAGACAAATATGGTAGGAAACATGTATCATGGTTCGCCTCTAAGAAAT-TGGATA
*
58790 CACTCTA-TTTTAGACTTTTTAAATGTG-TC-CGCTTGATTTTGTCTTCACTTCTC-TTTTTTTA
578 CACTCTATTTTTAGACTTTTTAAATG-GATCTCCCTTGATTTTGTCTTCACTTCTCTTTTTTTTA
*
58851 TTTATTCCCCCTCAATATTGCTATATGTTGCAAAGCAATTACACTATTTATTTATATGGATATTC
642 -TTATTCCCCCTCAATATTGCTATATGTTGCAATGCAATTACACTATTTATTTATATGGATATTC
* * * *
58916 TGGAAGCATATAGAAACTTGGCACTTGTACCGTGAGCCGTTACTTTCTTCTTGAGATTTTTTAGA
706 TGGAAACATATAGAAACTTGACACTTTTACCGTGAGCCGTTACTTTCTTCTTGA-AATTTTTAGA
* * * *
58981 CAATTTTTTATGTATAAATTCATTAAAGAACTTAAACTTGACATAAAAGAAGATGAACTAGAAGG
770 CAATTTTTTATGTATAAATTCATTAAAGAACTTAAACTTGACACAAAAGAAGATCAACAAAAAGG
* * * *
59046 GTTTATATCAAAAGTGAGGATGAAAACAAGGAATGCATCCTTTAAGGGAAATAAACACGATTGTA
835 ATTTATATCAAAAGTGAGGATGAAAACAAGGAATGAAGCCTTTAAGGGAAATAAAAACGATTGTA
* * * * *
59111 TATGTACCCCCAAACTCTTTTTATGTTTTATTTCCCCCATTTTTTCACTCGATGCG
900 TAAGTACCACCAAACTCTTTTTATGTTTTAGTTCCCCCATTTATTCACTCGAAGCG
* * * * *
59167 TATCCGAAAGTTGAATTGTGGTGAAATTTAACAACGCAAAACAAGTGATAAAATAAT-TTCAAAA
1 TATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGTGAT-AAATAATGTTAAAAA
* *
59231 ATAAAAGAGAAACACATGTTTTTAGTGATATTTAAGCAAACTTTCTATTGAAAGATTAAAGTCAT
65 ATAAAAGAGAAACACATGTTTTTAGTGATATTTAAGCAAACTTTCCATTGAAAGATTAGAGTCAT
* * * *
59296 AATTACAATAGAAACAAAAGACAAATATGCTACGAAGCAAGTATCTTGGTTGGCCTCTAACCATT
130 AATTACAATGGAAACAACAGACAAATATGCTAGGAAGC-AGTATCTTGGTTGGCCTCTAACCAAT
59361 TGGATACTCTGCATTTTATGACTTGACACAAAATACTTGAAACAAAAGATGATCAAAGAAAATAG
194 TGGATACTCTGCATTTTATGACTTGACACAAAATACTTGAAACAAAAGATGATCAAAGAAAATAG
*
59426 TTTATATCGAAAGTGAGGTTGAAAACAGGTAGCGAAGCCTTTAAGAGAAATAGACATGATTGTAT
259 TTTATATCGAAAGTGAGGTTGAAAACAGGGAGCGAAGCCTTTAAGAGAAATAGACATGATTGTAT
* ** * *
59491 AAGCACCCTCAAACTCTTTTTATGTTTTGTTTTCCCCTTCTTTTCACTTGGCGCGTATCTAAAAC
324 AAGCACCC-CAAACTCTTTTTATGTTTTGTTTTCCCCTTCTTTTCACTCGATGCGTATATGAAAC
* *
59556 TTGAATTTTGGTGAAAGTTGACAACGCAAAACAAGTGGTATATAATGTTAAAAAATAAAAGAAAA
388 TTGAATTGTGGTGAAAGTTGACAATGCAAAACAAGTGGTATATAATGTTAAAAAATAAAAGAAAA
*
59621 AATCTAATGCTTTTGAAAATATTTAAGCGAAATTGTCAATGAAAGATTAGAGTCATAATTACAAT
453 AA-CTAATGTTTTTGAAAATATTTAAGCGAAATT-TCAATGAAAGATTAGAGTCATAATTACAAT
* *
59686 GGAAACAATAGACAAATATGGTAGGAAACATGTATCATGCTTTGCCTCTAAGAAATTGGATACAC
516 GGAAACAATAGACAAATATGGTAGGAAACATGTATCATGGTTCGCCTCTAAGAAATTGGATACAC
* *
59751 TCTATTTTTAGACTTTTTGAATGGATCTCCCTTGATTTTATCTTCACTTCTCATTTTTTTTATCT
581 TCTATTTTTAGACTTTTTAAATGGATCTCCCTTGATTTTGTCTTCACTTCTC-TTTTTTTTAT-T
*
59816 ATTCCCCTGCTCAATATTGCTACATGTTGCAATGCAATTACACTATTTATTTATATGGATATTCT
644 ATTCCCC--CTCAATATTGCTATATGTTGCAATGCAATTACACTATTTATTTATATGGATATTCT
59881 GGAAACATATAGAAACTTGACACTTTTACCGTGAGCCGTTACTTTCTTCTTGAAATTTTTAGACA
707 GGAAACATATAGAAACTTGACACTTTTACCGTGAGCCGTTACTTTCTTCTTGAAATTTTTAGACA
*
59946 ATTTTTTATGTATAAATTCATTAAAGAACTTAAACTTGACACAGAAGAAGATCAA-AAAAAGGAT
772 ATTTTTTATGTATAAATTCATTAAAGAACTTAAACTTGACACAAAAGAAGATCAACAAAAAGGAT
* * *
60010 TTATATCGAAAGTTAGGATGAAAACAATGAATGAAGCCTTTAAGGGAAATAAAAACGATTGTATA
837 TTATATCAAAAGTGAGGATGAAAACAAGGAATGAAGCCTTTAAGGGAAATAAAAACGATTGTATA
* * *
60075 AGTATCACTAAACTCTTTTTATGTTTT-GTTCCCGCC-TTTATTCGCTCGAAGCG
902 AGTACCACCAAACTCTTTTTATGTTTTAGTTCCC-CCATTTATTCACTCGAAGCG
* * * *
60128 TATTTGAAACTTGAATTCTTGTTAAATTTGACAATGCAAAACAAGTGATAAATAATGTTAAAAAA
1 TATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGTGATAAATAATGTTAAAAAA
* * **
60193 TAAAAGAGAAACACATGTTTTT-GTGATATTTAAGCAAACATTCCAATGAAAGATTAGAGTTGTA
66 TAAAAGAGAAACACATGTTTTTAGTGATATTTAAGCAAACTTTCCATTGAAAGATTAGAGTCATA
* * * *
60257 ATTACAGTGGAAACAACCGACAAATATGGTAGGAAGCAGTTACCTTGGTTGGCCTCTAACCAATT
131 ATTACAATGGAAACAACAGACAAATATGCTAGGAAGCAG-TATCTTGGTTGGCCTCTAACCAATT
* * * *
60322 GGATTCTCTGCATTTTCA-AACGTGACACAAAATACTTGAAA-AAAAGAAGATCAAAGAAAATAG
195 GGATACTCTGCATTTT-ATGACTTGACACAAAATACTTGAAACAAAAGATGATCAAAGAAAATAG
** * * * * *
60385 TTTATATAAAAAGTAAGGATGAGAACAGGGAGCAAAGCCTTTAAGGGAAATAGACATGATTGTAT
259 TTTATATCGAAAGTGAGGTTGAAAACAGGGAGCGAAGCCTTTAAGAGAAATAGACATGATTGTAT
* * * * * * *
60450 AAGCATCCCAAACTCTTTCTATGTTTT-TCTTCCACCCTT-TATTCACTCGATGTGTATAGGAAT
324 AAGCACCCCAAACTCTTTTTATGTTTTGT-TTTC-CCCTTCTTTTCACTCGATGCGTATATGAAA
* * *
60513 CTTGAATTGTGGTGAAAGTTGACAATGCAAAACAAGTGGAATATAATGTTCAAAAATAAAA-CAA
387 CTTGAATTGTGGTGAAAGTTGACAATGCAAAACAAGTGGTATATAATGTTAAAAAATAAAAGAAA
* * *
60577 AAACTAATGTTTTTGAAAAATATTTAAGCGAACCTTCCAATGAAAGATTAGAGTCATTATTACAA
452 AAACTAATGTTTTTG-AAAATATTTAAGCGAA-ATTTCAATGAAAGATTAGAGTCATAATTACAA
* * * * * * ** *
60642 TGGAAACAATAGACAAATATGGCAGGGAGCAGGTATCATGGTTGGCCTTTAACCAATTGGATACT
515 TGGAAACAATAGACAAATATGGTAGGAAACATGTATCATGGTTCGCCTCTAAGAAATTGGATACA
** * * ** *
60707 CTGC-ATTTTCGGACTCTTTAAATGGAT-TAGCCTCAATTTTGTCTTCACCTCTCTTTTTATTTA
580 CT-CTATTTTTAGACTTTTTAAATGGATCT-CCCTTGATTTTGTCTTCACTTCTCTTTTT-TTTA
* * * * *
60770 TT-TTCCCCAT-AATTATTGCTATATGTTGCAATGCAGTTACTGTCTATTTATTTACATGGAGAT
642 TTATTCCCCCTCAA-TATTGCTATATGTTGCAATGCAATTAC--ACTATTTATTTATATGGATAT
* * * *
60833 TCTGGAAACATATAGAAACTCGACACTTTTACTGTGAGCCGTTAGTTTCTTCTTGAGATTT
704 TCTGGAAACATATAGAAACTTGACACTTTTACCGTGAGCCGTTACTTTCTTCTTGAAATTT
60894 CTTTTAAATG
Statistics
Matches: 1532, Mismatches: 165, Indels: 64
0.87 0.09 0.04
Matches are distributed among these distances:
952 2 0.00
953 26 0.02
955 81 0.05
956 18 0.01
957 163 0.11
958 573 0.37
959 148 0.10
960 157 0.10
961 91 0.06
962 106 0.07
963 63 0.04
964 104 0.07
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (955 bp):
TATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGTGATAAATAATGTTAAAAAA
TAAAAGAGAAACACATGTTTTTAGTGATATTTAAGCAAACTTTCCATTGAAAGATTAGAGTCATA
ATTACAATGGAAACAACAGACAAATATGCTAGGAAGCAGTATCTTGGTTGGCCTCTAACCAATTG
GATACTCTGCATTTTATGACTTGACACAAAATACTTGAAACAAAAGATGATCAAAGAAAATAGTT
TATATCGAAAGTGAGGTTGAAAACAGGGAGCGAAGCCTTTAAGAGAAATAGACATGATTGTATAA
GCACCCCAAACTCTTTTTATGTTTTGTTTTCCCCTTCTTTTCACTCGATGCGTATATGAAACTTG
AATTGTGGTGAAAGTTGACAATGCAAAACAAGTGGTATATAATGTTAAAAAATAAAAGAAAAAAC
TAATGTTTTTGAAAATATTTAAGCGAAATTTCAATGAAAGATTAGAGTCATAATTACAATGGAAA
CAATAGACAAATATGGTAGGAAACATGTATCATGGTTCGCCTCTAAGAAATTGGATACACTCTAT
TTTTAGACTTTTTAAATGGATCTCCCTTGATTTTGTCTTCACTTCTCTTTTTTTTATTATTCCCC
CTCAATATTGCTATATGTTGCAATGCAATTACACTATTTATTTATATGGATATTCTGGAAACATA
TAGAAACTTGACACTTTTACCGTGAGCCGTTACTTTCTTCTTGAAATTTTTAGACAATTTTTTAT
GTATAAATTCATTAAAGAACTTAAACTTGACACAAAAGAAGATCAACAAAAAGGATTTATATCAA
AAGTGAGGATGAAAACAAGGAATGAAGCCTTTAAGGGAAATAAAAACGATTGTATAAGTACCACC
AAACTCTTTTTATGTTTTAGTTCCCCCATTTATTCACTCGAAGCG
Found at i:63348 original size:968 final size:950
Alignment explanation
Indices: 61047--63466 Score: 2782
Period size: 968 Copynumber: 2.5 Consensus size: 950
61037 AACTTAACAT
* * *
61047 AAAATACTCGAAACAAAAGAAGATCAAAGAAAACAATTTATATTAAAAGCGAGGAAGAAAACAGG
1 AAAATACTTGAAACAAAAGAAGATCAAAGAAAACAATTTATATTAAAAGTGAGGATGAAAACAGG
** *
61112 GAGTGAAGCCTTTAAGGGAAATAGACATGATTGTATAAGCACCGCAATAGTCTTTTTAT-TTTTT
66 GAGCAAAGCCTTTAAGGGAAATAGACATGATTGTATAAGCACC-CAA-ACTCTTTTTATGTTTTT
* * * * *
61176 TTGCCACCCTTTTTTCACTCGGCGCGTATAGGAAACTTGAATTATTGTGAAAGTTGATAATCCAA
129 TTGCCACCC-TTTTTCACTCGGTGCGTATAGGAATCTTGAATTATGGTGAAAGTTGACAATGCAA
* * *
61241 AACAAGTGGTACATAATGTTAAATAATAAAAGAAAAACTAATGTTTTTGAAGATATTTAAACAAA
193 AACAAGTGGTATATAATGTTAAAAAATAAAA-AAAAACTAATGTTTTTGAAGATATTTAAACGAA
* * *
61306 ATTTCCAATCAAAGATTAGAGTCA-TATTACAATGGAAACAACAGTCAAATATGGTAGGAAACA-
257 ATTTCCAATGAAAGATTAGAGTAATTATTACAATGGAAACAACAGACAAATATGGTAGGAAACAT
* ** * *
61369 -TAT-ATCA-TCTCTAACAAATTGGATTCTCTCCATTTTCAGACTTTTTAAATGGGTCAAACCTC
322 GTATCATGATTCTCTAACAAATTGGAAACTCT-CATTTTTAGACTTTTTAAATGGGTCAAACCAC
* **
61431 GATTTTGTCTTCATCTCTCTTTTTATTTATTTTTCCCCTCAATATTTCAATATTTTGCGGTGCAA
386 GA-TTTGCCTTCATCTCTCTTTTTATTTATTTTTCCCCTCAATATTTC-ATATTTTGCAATGCAA
* * * ** *
61496 TTACTCTATATTTATTTATCTGAATATTCTTGAAACATATAGAAACTTGTCACATTTATTGTGAG
449 TTACACTATATTTATTTATATGAATATTCTTGAAACATATAGAAAATTAACACATTTATCGTGAG
* *
61561 CCATTAGTTTATTCTTGAGATTTTTTAAACAAATTTTTATGTATAAATTCATTAAAGAACTTAAA
514 CCATAACTTTATTCTTGAGATTTTTTAAACAAATTTTTATGTATAAATTCATTAAAGAACTTAAA
* * * *
61626 CTTGACACGAAAGAAGATCAAAGAAAAGGGTTTATATCAAAAGTGAGGATGAAAGCACAAAGTGA
579 CTTGACACAAAAGAAGATCAAAGAAAAGGGCTTATATCAAAAGCGAGGATGAAA-CACAAAATGA
* ** *
61691 AGCCTTTCAGGGAAATATACACAATTGTATAAGCACCGCAAACTCGTTTTATGTTTTGTTTCCCC
643 AGCCGTAAAGGGAAATAAACACAATTGTATAAGCACCGCAAACTCGTTTTATGTTTTGTTTCCCC
* * * * *
61756 TCTTTTTTCACTCGATACATATTTGAAACTTGAATTATGGTAAAATTTGACAATGCAAAATAAGT
708 CCTTTATTCAATCGACACATATTTGAAACTTGAATTATGGTAAAATTTGACAATGCAAAACAAGT
* * *
61821 GATAAATAAGATTTAAAAATAAAAGAGAAACACATGATTTTGGAGATATTTAAGCGAACTTTCAG
773 GATAAATAAGATTAAAAAATAAAAGAGAAACACATGATTTTGGAGATATTTAAGCGAACATTCAA
* * ** *
61886 TTGAAAGATTTGAGTCATAATTACAATGGAAACAACAGACTAATAAGGTATGAACCAGTTATCTT
838 ATGAAAGATTAGAGTCATAATTACAATGGAAACAACAGAAAAATAAGGTAGGAACCAGTTATCTT
61951 GGTTGGCCACTAACCAATTGGATATTCTGCATTTCTCAGACATGAAAC
903 GGTTGGCCACTAACCAATTGGATATTCTGCATTTCTCAGACATGAAAC
* * * * *
61999 AAAATACTTGAAACAACAGAAGATCAAAGAAAACAATTTATATTGAAAGTGAAGTTGAAAATAGG
1 AAAATACTTGAAACAAAAGAAGATCAAAGAAAACAATTTATATTAAAAGTGAGGATGAAAACAGG
* *
62064 GAGCAAAGCCTTTAAGAGAAATAGACATTATTGTATAAGCACCCCTAAACTCTTTTTATGTTTTG
66 GAGCAAAGCCTTTAAGGGAAATAGACATGATTGTATAAGCA-CCC-AAACTCTTTTTATGTTTT-
** *
62129 TTTGCC-CCCTTTTTCACTCGGCT-CGTATCTGAATCTTGAATTATGGTGAAAGTTGACAACGCA
128 TTTGCCACCCTTTTTCACTCGG-TGCGTATAGGAATCTTGAATTATGGTGAAAGTTGACAATGCA
* *
62192 AAACAAGTGGTATATATTGCTAAAAAATAAAAGAAAAAAACTAATGTTTTTGAAGATATTTAAGA
192 AAACAAGTGGTATATAATGTTAAAAAAT--AA-AAAAAAACTAATGTTTTTGAAGATATTTAA-A
* * * *
62257 -GAAATTTTCAATGAAAGATTAGAATAATAATTACGATGGAAACAACAGACAAATATGGTAGGAA
253 CGAAATTTCCAATGAAAGATTAGAGTAATTATTACAATGGAAACAACAGACAAATATGGTAGGAA
* * * * *
62321 ACATGAATCATGGTTTCCCTCTAAGAAATTGTATACACTCT-ATTGTTAGACTTTTTAAATGGGT
318 ACATGTATCAT-GATT--CTCTAACAAATTGGA-A-ACTCTCATTTTTAGACTTTTTAAATGGGT
** * *
62385 C-TGCCACGA-TTGCCTTCATTTCTCTTTTTCTTTTTCTTTTTTATTTCGCTCCTCAAT-TTTGC
378 CAAACCACGATTTGCCTTCA--TCTC----TCTTTTTATTTATT-TTTC-C-CCTCAATATTT-C
* * *
62447 -TATTCGTTGCAATTCAATTACACTCTATTTATTTATATGGATATT-TTGGAAACATATAGAAAA
433 ATATT--TTGCAATGCAATTACACTATATTTATTTATATGAATATTCTT-GAAACATATAGAAAA
* * * *
62510 TTAACACTTTTATCGTGAGCCATAACTTTCTTCTTGAGATTTTTTAGACAATTTTTTATGTATAA
495 TTAACACATTTATCGTGAGCCATAACTTTATTCTTGAGATTTTTTAAACAAATTTTTATGTATAA
*
62575 ATTCATTAAAGAACTTAAACTTGACACAAAAGAAGATGAAAGAAAAGGGCTTATATCAAAAGCGA
560 ATTCATTAAAGAACTTAAACTTGACACAAAAGAAGATCAAAGAAAAGGGCTTATATCAAAAGCGA
* *
62640 GGATGAAA-ACAAGGAATGAAGCCGTAAAGGGAAATAAACACGATTGTATAAGTATCC-CTAAAC
625 GGATGAAACACAA--AATGAAGCCGTAAAGGGAAATAAACACAATTGTATAAGCA-CCGC-AAAC
* * * *
62703 TCTTTTTATGTTTTGTTTGCCCCCCATTTATTCAATCGACACGTATTTGAAATTTGGAA-TGTGG
686 TCGTTTTATGTTTTGTTT-CCCCCC-TTTATTCAATCGACACATATTTGAAACTT-GAATTATGG
* *
62767 TGAAATTTGACAATGCAAAACAAGTGATAAATAATG-TTAAAAAATAAAAGAGAAACACAT-TTT
748 TAAAATTTGACAATGCAAAACAAGTGATAAATAA-GATTAAAAAATAAAAGAGAAACACATGATT
* * *** * *
62830 TTTGTGATATTTACTTGAACATTCAAATGAAAGATTAGAGTCATAATTACAGTGGAAACAACCGA
812 TTGGAGATATTTAAGCGAACATTCAAATGAAAGATTAGAGTCATAATTACAATGGAAACAACAGA
* * * * * * *
62895 AAAATATGGTAGGAAGCAGTTATGTTGGTTTGCCTCTAGCCAATTGGAT-TCTTTGCATTT-TCA
877 AAAATAAGGTAGGAACCAGTTATCTTGGTTGGCCACTAACCAATTGGATAT-TCTGCATTTCTCA
** *
62958 GATGTGACAC
941 GACATGAAAC
* * * * * *
62968 AAAATACTTGAAAAAAAAAGAAGATCAAAGAAAATAGTTTACATAAAAAGTGAGGATGAGAACAG
1 AAAATACTTG-AAACAAAAGAAGATCAAAGAAAACAATTTATATTAAAAGTGAGGATGAAAACAG
* *
63033 GGAGCAAAGCCTTTAAGGGAAATAGACATGATTGTATAATCACTCCAAACTCTTTCTATGTTTTT
65 GGAGCAAAGCCTTTAAGGGAAATAGACATGATTGTATAAGCAC-CCAAACTCTTTTTATGTTTTT
* * * * * *
63098 CTT-CCATCCTTTATTCACTCAGTGCGTATAGGAGTCTTGAATTGTGGTGATAGTGGACAATGCA
129 -TTGCCACCCTTT-TTCACTCGGTGCGTATAGGAATCTTGAATTATGGTGAAAGTTGACAATGCA
* * *
63162 AAACAAGCGGTATATAATGTTAAAAAATAAAAAAAAGACTAATGTTTTTGAAAATATTTAATCGA
192 AAACAAGTGGTATATAATGTTAAAAAATAAAAAAAA-ACTAATGTTTTTGAAGATATTTAAACGA
* * * * *
63227 ACTTTCCAATGAAAGATTAGAGTTATTATTACAATGGAAACAACAAACAAATATGGTAGGGAGCA
256 AATTTCCAATGAAAGATTAGAGTAATTATTACAATGGAAACAACAGACAAATATGGTAGGAAACA
* ** * ** * * *
63292 TGTATCATGATTGGCATTTAACCGATTGGAAACTCTGCATTTTTGGACACTTTAAATTGGT-TAG
321 TGTATCATGATT--C-TCTAACAAATTGGAAACTCT-CATTTTTAGACTTTTTAAATGGGTCAAA
* ** * * * * *
63356 CCTCGATTTTTTCTTCATCTCTCTTTTTATTTATTTTACCCATCAAAATTGCTATATTTTGTAAT
382 CCACGA-TTTGCCTTCATCTCTCTTTTTATTTATTTTTCCCCTCAATATTTC-ATATTTTGCAAT
* * * * *
63421 GCAATTACTCTTTATTTATTTATATGGATATTCTGGAATCATATAG
445 GCAATTACACTATATTTATTTATATGAATATTCTTGAAACATATAG
63467 GAACAAATAG
Statistics
Matches: 1229, Mismatches: 180, Indels: 109
0.81 0.12 0.07
Matches are distributed among these distances:
952 174 0.14
953 11 0.01
954 58 0.05
955 39 0.03
957 2 0.00
958 2 0.00
959 8 0.01
960 1 0.00
961 60 0.05
962 39 0.03
963 7 0.01
964 16 0.01
965 12 0.01
966 17 0.01
967 17 0.01
968 343 0.28
969 70 0.06
970 266 0.22
971 83 0.07
972 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (950 bp):
AAAATACTTGAAACAAAAGAAGATCAAAGAAAACAATTTATATTAAAAGTGAGGATGAAAACAGG
GAGCAAAGCCTTTAAGGGAAATAGACATGATTGTATAAGCACCCAAACTCTTTTTATGTTTTTTT
GCCACCCTTTTTCACTCGGTGCGTATAGGAATCTTGAATTATGGTGAAAGTTGACAATGCAAAAC
AAGTGGTATATAATGTTAAAAAATAAAAAAAAACTAATGTTTTTGAAGATATTTAAACGAAATTT
CCAATGAAAGATTAGAGTAATTATTACAATGGAAACAACAGACAAATATGGTAGGAAACATGTAT
CATGATTCTCTAACAAATTGGAAACTCTCATTTTTAGACTTTTTAAATGGGTCAAACCACGATTT
GCCTTCATCTCTCTTTTTATTTATTTTTCCCCTCAATATTTCATATTTTGCAATGCAATTACACT
ATATTTATTTATATGAATATTCTTGAAACATATAGAAAATTAACACATTTATCGTGAGCCATAAC
TTTATTCTTGAGATTTTTTAAACAAATTTTTATGTATAAATTCATTAAAGAACTTAAACTTGACA
CAAAAGAAGATCAAAGAAAAGGGCTTATATCAAAAGCGAGGATGAAACACAAAATGAAGCCGTAA
AGGGAAATAAACACAATTGTATAAGCACCGCAAACTCGTTTTATGTTTTGTTTCCCCCCTTTATT
CAATCGACACATATTTGAAACTTGAATTATGGTAAAATTTGACAATGCAAAACAAGTGATAAATA
AGATTAAAAAATAAAAGAGAAACACATGATTTTGGAGATATTTAAGCGAACATTCAAATGAAAGA
TTAGAGTCATAATTACAATGGAAACAACAGAAAAATAAGGTAGGAACCAGTTATCTTGGTTGGCC
ACTAACCAATTGGATATTCTGCATTTCTCAGACATGAAAC
Found at i:66776 original size:17 final size:17
Alignment explanation
Indices: 66756--66833 Score: 77
Period size: 17 Copynumber: 4.5 Consensus size: 17
66746 AATTTTCATC
66756 TTAAATTTATTTTAAGA
1 TTAAATTTATTTTAAGA
* *
66773 TTAAATTTGTTTTAAAA
1 TTAAATTTATTTTAAGA
*
66790 TTTAATATTATTTTAA-A
1 TTAAAT-TTATTTTAAGA
* * *
66807 TTTAAATTTAATTTGAGT
1 -TTAAATTTATTTTAAGA
66825 TTAAATTTA
1 TTAAATTTA
66834 CTTACAAATT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
17 37 0.74
18 13 0.26
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
TTAAATTTATTTTAAGA
Found at i:66817 original size:23 final size:23
Alignment explanation
Indices: 66787--66833 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
66777 ATTTGTTTTA
*
66787 AAATTTAATATT-ATTTTAAATTT
1 AAATTTAAT-TTGAGTTTAAATTT
66810 AAATTTAATTTGAGTTTAAATTT
1 AAATTTAATTTGAGTTTAAATTT
66833 A
1 A
66834 CTTACAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
AAATTTAATTTGAGTTTAAATTT
Found at i:66829 original size:52 final size:52
Alignment explanation
Indices: 66756--66866 Score: 143
Period size: 52 Copynumber: 2.1 Consensus size: 52
66746 AATTTTCATC
* ** * *
66756 TTAAATTTATTTTAAGATTAAATTTGTTTTA-AAATTTAATATTATTTTAAAT
1 TTAAATTTAATTTAAGATTAAATTT-ACTTACAAATTTAAAATTATTATAAAT
* *
66808 TTAAATTTAATTTGAGTTTAAATTTACTTACAAATTTAAAATTATTATAAAT
1 TTAAATTTAATTTAAGATTAAATTTACTTACAAATTTAAAATTATTATAAAT
66860 TTAAATT
1 TTAAATT
66867 AAATAAAATC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
51 3 0.06
52 48 0.94
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (52 bp):
TTAAATTTAATTTAAGATTAAATTTACTTACAAATTTAAAATTATTATAAAT
Found at i:66861 original size:17 final size:17
Alignment explanation
Indices: 66787--66864 Score: 68
Period size: 17 Copynumber: 4.5 Consensus size: 17
66777 ATTTGTTTTA
* *
66787 AAATTTAATATTATTTT
1 AAATTTAAAATTATTAT
*
66804 AAATTTAAATTTAATT-T
1 AAATTTAAAATT-ATTAT
* * * *
66821 GAGTTTAAATTTACTTAC
1 AAATTTAAAATTA-TTAT
66839 AAATTTAAAATTATTAT
1 AAATTTAAAATTATTAT
66856 AAATTTAAA
1 AAATTTAAA
66865 TTAAATAAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
16 1 0.02
17 35 0.71
18 13 0.27
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (17 bp):
AAATTTAAAATTATTAT
Found at i:67649 original size:21 final size:20
Alignment explanation
Indices: 67619--67657 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
67609 AATAGTCATA
*
67619 ATAACATTAATAATAATACT
1 ATAACATTAAGAATAATACT
67639 ATAACATTTAAGAATAATA
1 ATAACA-TTAAGAATAATA
67658 TTAATAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (20 bp):
ATAACATTAAGAATAATACT
Found at i:68643 original size:30 final size:30
Alignment explanation
Indices: 68594--69040 Score: 300
Period size: 29 Copynumber: 15.2 Consensus size: 30
68584 CACAAATTAT
68594 ATTTTT-ACCCTCG-AACTTCCAAAAATTCC
1 ATTTTTGACCC-CGAAACTTCCAAAAATTCC
* **
68623 ATTTTTGATCCCGAAACTTCCAAAAATTAT
1 ATTTTTGACCCCGAAACTTCCAAAAATTCC
* *
68653 ATTTTT-CCCCTCG-AACTTCCAAAAATTCT
1 ATTTTTGACCC-CGAAACTTCCAAAAATTCC
* * * *** *
68682 ATTATTGACCTCAAAACTTTTGAAAATTAC
1 ATTTTTGACCCCGAAACTTCCAAAAATTCC
*
68712 ATTTTT-ACCCCTAAACTTCCAAAAATTCC
1 ATTTTTGACCCCGAAACTTCCAAAAATTCC
** *** **
68741 ATTTTTGACCTTGAAACTTTTGAAAATAAC
1 ATTTTTGACCCCGAAACTTCCAAAAATTCC
*
68771 ATTTTT-ACCCCTG-AACCTCCAAAAATTCC
1 ATTTTTGACCCC-GAAACTTCCAAAAATTCC
* *
68800 ATTTTTGACCCCAAAACTTCCAAAAAAAT--
1 ATTTTTGACCCCGAAACTTCC-AAAAATTCC
*
68829 ATTTTT-ACCCCTG-AACTTCAAAAAATTCC
1 ATTTTTGACCCC-GAAACTTCCAAAAATTCC
* ** * **
68858 ATTTTTCACATCGAAACTTCTAAAAATTAA
1 ATTTTTGACCCCGAAACTTCCAAAAATTCC
* *
68888 AATTTT-ACCCCAAAACTTCCGAAAAA-TCC
1 ATTTTTGACCCCGAAACTTCC-AAAAATTCC
* *
68917 ATTTTTGACCCCGAAACTTCCAAAAAATAC
1 ATTTTTGACCCCGAAACTTCCAAAAATTCC
* * **
68947 ATTTTTAACCCCG-AACCTCCAAAAATTTG
1 ATTTTTGACCCCGAAACTTCCAAAAATTCC
* * * *
68976 ATTTTTGACCTCAAAACTTTCAAAACTTACC
1 ATTTTTGACCCCGAAACTTCCAAAAATT-CC
*
69007 A-TTTT-ACCCTCG-AA-TGTCCAAAAATCCC
1 ATTTTTGACCC-CGAAACT-TCCAAAAATTCC
69035 ATTTTT
1 ATTTTT
69041 TGATCTCGAT
Statistics
Matches: 318, Mismatches: 77, Indels: 46
0.72 0.17 0.10
Matches are distributed among these distances:
27 6 0.02
28 15 0.05
29 145 0.46
30 145 0.46
31 7 0.02
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.34
Consensus pattern (30 bp):
ATTTTTGACCCCGAAACTTCCAAAAATTCC
Found at i:68679 original size:59 final size:58
Alignment explanation
Indices: 68587--69102 Score: 381
Period size: 59 Copynumber: 8.8 Consensus size: 58
68577 AACTATACAC
* *
68587 AAATTATATTTTTACCCTCGAACTTCCAAAAATTCCATTTTTGATCCCGAAACTTCCAA
1 AAATTACATTTTTCCCCTCGAACTTCCAAAAATTCCATTTTTGA-CCCGAAACTTCCAA
* * * * ***
68646 AAATTATATTTTTCCCCTCGAACTTCCAAAAATTCTATTATTGACCTCAAAACTTTTGA
1 AAATTACATTTTTCCCCTCGAACTTCCAAAAATTCCATTTTTGACC-CGAAACTTCCAA
* * ***
68705 AAATTACATTTTTACCCCT-AAACTTCCAAAAATTCCATTTTTGACCTTGAAACTTTTGA
1 AAATTACATTTTT-CCCCTCGAACTTCCAAAAATTCCATTTTTGACC-CGAAACTTCCAA
* * *
68764 AAATAACATTTTTACCCCT-GAACCTCCAAAAATTCCATTTTTGACCCCAAAACTTCCAA
1 AAATTACATTTTT-CCCCTCGAACTTCCAAAAATTCCATTTTTGA-CCCGAAACTTCCAA
* * * * * *
68823 AAA-AATATTTTTACCCCT-GAACTTCAAAAAATTCCATTTTTCACATCGAAACTTCTAA
1 AAATTACATTTTT-CCCCTCGAACTTCCAAAAATTCCATTTTTGAC-CCGAAACTTCCAA
* * **
68881 AAATTAAAATTTTACCCC-AAAACTTCCGAAAAA-TCCATTTTTGACCCCGAAACTTCCAA
1 AAATT-ACATTTTTCCCCTCGAACTTCC-AAAAATTCCATTTTTGA-CCCGAAACTTCCAA
* * * ** * *
68940 AAAATACATTTTTAACCC-CGAACCTCCAAAAATTTGATTTTTGACCTCAAAACTTTCAA
1 AAATTACATTTTT-CCCCTCGAACTTCCAAAAATTCCATTTTTGACC-CGAAACTTCCAA
* * * * **
68999 AACTTACCA-TTTTACCCTCGAA-TGTCCAAAAATCCCATTTTTTGATCTCG-ATTTTCCTAA
1 AAATTA-CATTTTTCCCCTCGAACT-TCCAAAAATTCCA-TTTTTGA-CCCGAAACTTCC-AA
* * *
69059 AAATTACCATTTTACCCC-CGGA-TGTCCAAAAATTCCGTTTTTGA
1 AAATTA-CATTTTTCCCCTCGAACT-TCCAAAAATTCCATTTTTGA
69103 TCTCGATTTT
Statistics
Matches: 374, Mismatches: 64, Indels: 38
0.79 0.13 0.08
Matches are distributed among these distances:
57 1 0.00
58 68 0.18
59 243 0.65
60 55 0.15
61 7 0.02
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.34
Consensus pattern (58 bp):
AAATTACATTTTTCCCCTCGAACTTCCAAAAATTCCATTTTTGACCCGAAACTTCCAA
Found at i:69011 original size:118 final size:118
Alignment explanation
Indices: 68594--69040 Score: 464
Period size: 118 Copynumber: 3.8 Consensus size: 118
68584 CACAAATTAT
* *
68594 ATTTTTA-CCCTCGAACTTCCAAAAATTCCATTTTTGATCC-CGAAACTTCCAAAAATT-ATATT
1 ATTTTTACCCCT-GAACTTCCAAAAATTCCATTTTTGA-CCTCGAAACTTTCAAAAATTAACATT
* * * * * *** *
68656 TTTCCCCTCGAACTTCCAAAAATTCTATTATTGACCTCAAAACTTTTGAAAATTAC
64 TTACCCC-AGAACTTCCAAAAATTCCATTTTTGACCCCAAAACTTCCAAAAAATAC
* * **
68712 ATTTTTACCCCTAAACTTCCAAAAATTCCATTTTTGACCTTGAAACTTTTGAAAA-TAACATTTT
1 ATTTTTACCCCTGAACTTCCAAAAATTCCATTTTTGACCTCGAAACTTTCAAAAATTAACA-TTT
* * *
68776 TACCCCTGAACCTCCAAAAATTCCATTTTTGACCCCAAAACTTCCAAAAAA-AT
65 TACCCCAGAACTTCCAAAAATTCCATTTTTGACCCCAAAACTTCCAAAAAATAC
* * * *
68829 ATTTTTACCCCTGAACTTCAAAAAATTCCATTTTTCACATCGAAAC-TTCTAAAAATTAAAATTT
1 ATTTTTACCCCTGAACTTCCAAAAATTCCATTTTTGACCTCGAAACTTTC-AAAAATTAACATTT
* *
68893 TACCCCAAAACTTCCGAAAAA-TCCATTTTTGACCCCGAAACTTCCAAAAAATAC
65 TACCCCAGAACTTCC-AAAAATTCCATTTTTGACCCCAAAACTTCCAAAAAATAC
* ** * * *
68947 ATTTTTAACCCC-GAACCTCCAAAAATTTGATTTTTGACCTCAAAACTTTCAAAACTTACCATTT
1 ATTTTT-ACCCCTGAACTTCCAAAAATTCCATTTTTGACCTCGAAACTTTCAAAAATTAACATTT
*
69011 TACCCTC-GAA-TGTCCAAAAATCCCATTTTT
65 TACCC-CAGAACT-TCCAAAAATTCCATTTTT
69041 TGATCTCGAT
Statistics
Matches: 274, Mismatches: 42, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
116 2 0.01
117 99 0.36
118 152 0.55
119 21 0.08
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.34
Consensus pattern (118 bp):
ATTTTTACCCCTGAACTTCCAAAAATTCCATTTTTGACCTCGAAACTTTCAAAAATTAACATTTT
ACCCCAGAACTTCCAAAAATTCCATTTTTGACCCCAAAACTTCCAAAAAATAC
Found at i:69067 original size:60 final size:59
Alignment explanation
Indices: 68997--69112 Score: 178
Period size: 60 Copynumber: 1.9 Consensus size: 59
68987 CAAAACTTTC
* * *
68997 AAAACTTACCATTTTACCCTCGAATGTCCAAAAATCCCATTTTTTGATCTCGATTTTCCT
1 AAAAATTACCATTTTACCCCCGAATGTCCAAAAATCCC-GTTTTTGATCTCGATTTTCCT
* *
69057 AAAAATTACCATTTTACCCCCGGATGTCCAAAAATTCCGTTTTTGATCTCGATTTT
1 AAAAATTACCATTTTACCCCCGAATGTCCAAAAATCCCGTTTTTGATCTCGATTTT
69113 TTAAAAAGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
59 17 0.33
60 34 0.67
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.38
Consensus pattern (59 bp):
AAAAATTACCATTTTACCCCCGAATGTCCAAAAATCCCGTTTTTGATCTCGATTTTCCT
Found at i:69131 original size:59 final size:59
Alignment explanation
Indices: 68997--69207 Score: 205
Period size: 59 Copynumber: 3.6 Consensus size: 59
68987 CAAAACTTTC
* * * *
68997 AAAACTTACCATTTTACCCTCGAATGTCCAAAAATCCCATTTTTTGATCTCGATTTTCCT
1 AAAAATTACCATTTTACCCCCGGATGTCCAAAAATTCCA-TTTTTGATCTCGATTTTCCT
* *
69057 AAAAATTACCATTTTACCCCCGGATGTCCAAAAATTCCGTTTTTGATCTCGATTTT-TT
1 AAAAATTACCATTTTACCCCCGGATGTCCAAAAATTCCATTTTTGATCTCGATTTTCCT
* * * * * *
69115 AAAAAGTTA-TATTTTTACCCCTAGG-TGTCTAAAAATTCTATTTTTAATCTCGAACTTTCC-
1 AAAAA-TTACCA-TTTTACCCC-CGGATGTCCAAAAATTCCATTTTTGATCTCG-ATTTTCCT
* * * *
69175 CAAAATTACCATTTTTCCCCCGGGTATCCAAAA
1 AAAAATTACCATTTTACCCCCGGATGTCCAAAA
69208 GTCTTATTTT
Statistics
Matches: 124, Mismatches: 20, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
58 9 0.07
59 70 0.56
60 45 0.36
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.38
Consensus pattern (59 bp):
AAAAATTACCATTTTACCCCCGGATGTCCAAAAATTCCATTTTTGATCTCGATTTTCCT
Found at i:75125 original size:12 final size:12
Alignment explanation
Indices: 75105--75140 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
75095 GCATTGCACT
*
75105 TCATGCATTTTA
1 TCATTCATTTTA
75117 TCATTCATTTTA
1 TCATTCATTTTA
75129 TCATTCATTTTA
1 TCATTCATTTTA
75141 ACAACACTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.03, T:0.56
Consensus pattern (12 bp):
TCATTCATTTTA
Found at i:76465 original size:81 final size:81
Alignment explanation
Indices: 76319--76479 Score: 225
Period size: 81 Copynumber: 2.0 Consensus size: 81
76309 AGTTAACAAG
* * **
76319 AATATCAAGAAGATTGAGACCTACAAAGATTGACATGAGGAGTTATCATTTGCTCCCTATGCTTA
1 AATATCAAGAAGATCGAGACCTACAAAGATTGACATGAGAAGTTATCATTTGCTCCCTACACTTA
76384 TTGAACATCAATCAAT
66 TTGAACATCAATCAAT
* * * *
76400 AATATCAAGAAGATCGAGACCTATAAAGTTTGGA-ATGAGAAGTTATCATTTGGTCTCTACACTT
1 AATATCAAGAAGATCGAGACCTACAAAGATT-GACATGAGAAGTTATCATTTGCTCCCTACACTT
*
76464 ATTGAGCATCAATCAA
65 ATTGAACATCAATCAA
76480 GATTTTGTTG
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
81 68 0.97
82 2 0.03
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (81 bp):
AATATCAAGAAGATCGAGACCTACAAAGATTGACATGAGAAGTTATCATTTGCTCCCTACACTTA
TTGAACATCAATCAAT
Found at i:76895 original size:18 final size:19
Alignment explanation
Indices: 76874--76914 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
76864 TTTTCAACCA
*
76874 AAAAAAAG-GAAGAAAAAG
1 AAAAAAAGAAAAGAAAAAG
*
76892 AAAAAAAGAAAAGACAAAG
1 AAAAAAAGAAAAGAAAAAG
76911 AAAA
1 AAAA
76915 CCAAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.00
Consensus pattern (19 bp):
AAAAAAAGAAAAGAAAAAG
Found at i:78024 original size:49 final size:49
Alignment explanation
Indices: 77872--78041 Score: 150
Period size: 49 Copynumber: 3.4 Consensus size: 49
77862 AAGACATAAA
* * * *
77872 GGGAAAGGTTGAGGTTGTAACGACGAACCCT-GTACCTTAGAAGATGTGAT
1 GGGAAAGGTTGAGGCTGCAACGGCGAA-CCTGGTACCTTAGAAGA-GAGAT
* * * * * *
77922 GGG-AAGGATTGAGGTTGCAACAGCGAATCTGGTACCAT-GAAGATATGAA
1 GGGAAAGG-TTGAGGCTGCAACGGCGAACCTGGTACCTTAGAAGAGA-GAT
*
77971 GGGAAAGGTTGAGGCTGCATCGGCGAACCTGGTACCTTAG-AGACGAGAT
1 GGGAAAGGTTGAGGCTGCAACGGCGAACCTGGTACCTTAGAAGA-GAGAT
* *
78020 GGGAAAGATCGAGGCTGCAACG
1 GGGAAAGGTTGAGGCTGCAACG
78042 ATGAATCTAG
Statistics
Matches: 96, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
49 65 0.68
50 31 0.32
ACGTcount: A:0.31, C:0.15, G:0.35, T:0.19
Consensus pattern (49 bp):
GGGAAAGGTTGAGGCTGCAACGGCGAACCTGGTACCTTAGAAGAGAGAT
Found at i:78074 original size:99 final size:99
Alignment explanation
Indices: 77867--78156 Score: 266
Period size: 99 Copynumber: 2.9 Consensus size: 99
77857 ACTTAAAGAC
* * * * * *
77867 ATAAAGGGAAAGGTTGAGGTTGTAACGACGAACCCTGTACCTTAGAAGATGTGATGGGAAGGATT
1 ATAAAGGGAAAGGTTGAGGCTGCAACGACGAACCCTGTACCTTAGAAGACGAGATGGGAAAGATC
* * * *
77932 GAGGTTGCAACAGCGAATCTGGTACCATGAAGAT
66 GAGGCTGCAACAGCGAATCTAGTACCATAAAAAT
* * *
77966 ATGAAGGGAAAGGTTGAGGCTGCATCGGCGAA-CCTGGTACCTTAG-AGACGAGATGGGAAAGAT
1 ATAAAGGGAAAGGTTGAGGCTGCAACGACGAACCCT-GTACCTTAGAAGACGAGATGGGAAAGAT
*
78029 CGAGGCTGCAAC-GATGAATCTAGTACCATAAAAAT
65 CGAGGCTGCAACAG-CGAATCTAGTACCATAAAAAT
* *** * * * *
78064 ATAAAGGGGAATGGTTGAGGCCATAACGACAAACCTTGTACCCTAGAA-AC-ATGATGGGAAGGA
1 ATAAA-GGGAAAGGTTGAGGCTGCAACGACGAACCCTGTACCTTAGAAGACGA-GATGGGAAAGA
* * * * *
78127 TTGAGGCCGCAACGGAGAATCTAGAACCAT
64 TCGAGGCTGCAACAGCGAATCTAGTACCAT
78157 GAAGATCTTA
Statistics
Matches: 155, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
97 1 0.01
98 50 0.32
99 100 0.65
100 4 0.03
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.19
Consensus pattern (99 bp):
ATAAAGGGAAAGGTTGAGGCTGCAACGACGAACCCTGTACCTTAGAAGACGAGATGGGAAAGATC
GAGGCTGCAACAGCGAATCTAGTACCATAAAAAT
Found at i:80084 original size:23 final size:22
Alignment explanation
Indices: 80049--80159 Score: 105
Period size: 25 Copynumber: 4.7 Consensus size: 22
80039 CATTAAGGAA
* *
80049 CACTAGTGCGCCCTCTGTTTAG
1 CACTTGTGTGCCCTCTGTTTAG
80071 CACTGTGTGTGCCCTCTGTTATTAG
1 CACT-TGTGTGCCCTCTG-T-TTAG
* *
80096 CACTTCATGTGCCCTCTGATTAG
1 CACTT-GTGTGCCCTCTGTTTAG
*
80119 CACTTGTGTGCCCTCTATTACCTAG
1 CACTTGTGTGCCCTCTGTT---TAG
*
80144 CACTTATGTGCCCTCT
1 CACTTGTGTGCCCTCT
80160 ATTAAGTACT
Statistics
Matches: 74, Mismatches: 8, Indels: 11
0.80 0.09 0.12
Matches are distributed among these distances:
22 15 0.20
23 20 0.27
24 2 0.03
25 37 0.50
ACGTcount: A:0.14, C:0.31, G:0.19, T:0.36
Consensus pattern (22 bp):
CACTTGTGTGCCCTCTGTTTAG
Found at i:80153 original size:47 final size:48
Alignment explanation
Indices: 80058--80163 Score: 155
Period size: 47 Copynumber: 2.2 Consensus size: 48
80048 ACACTAGTGC
* * *
80058 GCCCTCTGTTTAGCACTGTGTGTGCCCTCTGTTATTAGCACTTCATGT
1 GCCCTCTGATTAGCACTGTGTGTGCCCTCTATTACTAGCACTTCATGT
80106 GCCCTCTGATTAGCACT-TGTGTGCCCTCTATTACCTAGCACTT-ATGT
1 GCCCTCTGATTAGCACTGTGTGTGCCCTCTATTA-CTAGCACTTCATGT
80153 GCCCTCT-ATTA
1 GCCCTCTGATTA
80164 AGTACTTCGG
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
46 4 0.07
47 26 0.48
48 24 0.44
ACGTcount: A:0.15, C:0.29, G:0.18, T:0.38
Consensus pattern (48 bp):
GCCCTCTGATTAGCACTGTGTGTGCCCTCTATTACTAGCACTTCATGT
Found at i:87173 original size:25 final size:23
Alignment explanation
Indices: 87117--87205 Score: 119
Period size: 23 Copynumber: 3.8 Consensus size: 23
87107 CATTAAGGAA
*
87117 CACTAGTGTGCCCTCTGT-TTAG
1 CACTTGTGTGCCCTCTGTATTAG
87139 CACTGTGTGTGCCCTCTGTTATTAG
1 CACT-TGTGTGCCCTCTG-TATTAG
87164 CACTTCGTGTGCCCTCTG-ATTAG
1 CACTT-GTGTGCCCTCTGTATTAG
87187 CACTTTGTGTGCCCTCTGT
1 CAC-TTGTGTGCCCTCTGT
87206 TACCCAACAC
Statistics
Matches: 60, Mismatches: 1, Indels: 10
0.85 0.01 0.14
Matches are distributed among these distances:
22 4 0.07
23 32 0.53
24 4 0.07
25 20 0.33
ACGTcount: A:0.11, C:0.28, G:0.22, T:0.38
Consensus pattern (23 bp):
CACTTGTGTGCCCTCTGTATTAG
Found at i:87223 original size:48 final size:47
Alignment explanation
Indices: 87115--87232 Score: 141
Period size: 48 Copynumber: 2.5 Consensus size: 47
87105 GACATTAAGG
* **
87115 AACAC-TAGTGTGCCCTCTGTTTAGCACTGTGTGTGCCCTCTGTTATT
1 AACACTTA-TGTGCCCTCTGATTAGCACTGTGTGTGCCCTCTGTTACC
* * *
87162 AGCACTTCGTGTGCCCTCTGATTAGCACTTTGTGTGCCCTCTGTTACCC
1 AACACTT-ATGTGCCCTCTGATTAGCACTGTGTGTGCCCTCTGTTA-CC
87211 AACACTTATGTGCCCTCT-ATTA
1 AACACTTATGTGCCCTCTGATTA
87233 AGTACTTCGG
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
47 8 0.13
48 46 0.77
49 6 0.10
ACGTcount: A:0.16, C:0.29, G:0.19, T:0.36
Consensus pattern (47 bp):
AACACTTATGTGCCCTCTGATTAGCACTGTGTGTGCCCTCTGTTACC
Found at i:88924 original size:114 final size:114
Alignment explanation
Indices: 87917--88913 Score: 1329
Period size: 114 Copynumber: 8.8 Consensus size: 114
87907 TCATACACTA
* * * * * *
87917 TGTTGAATCATAACAACGAAGTCGAGCTTAACGTCCCTGAGGATACAATGGAGTAGAGTGAGACT
1 TGTTGAATCAAAACAACGAAGCCGAGCTCAACGTCCCTGAGGATACAGTGGAGTGGAGTGAAACT
*
87982 TCAAATCCCATCTTCCTGGTGAGGT--TGAGAAGTGGGTCAAAACAGTG
66 TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAGTG
* * * *
88029 TGTTGAATCAAAAAAACGAAGCTGAGCTCAACGTCCCTGAGGATGCAGTGGAGTGAAGTGAAACT
1 TGTTGAATCAAAACAACGAAGCCGAGCTCAACGTCCCTGAGGATACAGTGGAGTGGAGTGAAACT
* * *
88094 TCAAATCCTAT-TTCCTGGTGAGGTACAGAGAAGTGAGTCAAAATAGTG
66 TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAGTG
* * *
88142 TGTTGAATAAAAATAACGAAGCCGAGCTCAACGTCCCTGTGGATACAGTGGAGTGGAGTGAAACT
1 TGTTGAATCAAAACAACGAAGCCGAGCTCAACGTCCCTGAGGATACAGTGGAGTGGAGTGAAACT
* * * * *
88207 TCAAATCCCATCTTCCTTGTGAGATACAGAGAAGTGAGTTAAAATAGTG
66 TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAGTG
* * * *
88256 TGTTGAATCAAAACAACGAAGCCGAG-TATAACATCCTTGAGGATATAGTGGAGTGGAGTGAAAC
1 TGTTGAATCAAAACAACGAAGCCGAGCT-CAACGTCCCTGAGGATACAGTGGAGTGGAGTGAAAC
* * * * *
88320 TTCGAATCCCATCTTCCTGGTGACGTACAGAGAAGCGAGTCAAAGCAGTG
65 TTCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAGTG
* * *
88370 TGTTGAATCAAAACAACGAAGCCGAGCTCAACATCCCTAAGGATACAATGGAGTGGAGTGAAACT
1 TGTTGAATCAAAACAACGAAGCCGAGCTCAACGTCCCTGAGGATACAGTGGAGTGGAGTGAAACT
* * *
88435 TCGAATCCGATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAATG
66 TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAGTG
* * * *
88484 TGTTGAATAAAAACAAAGAAGCCGAGCTCAACGTCCTTGAGGATGCAGTGGAGTGGAGTGAAACT
1 TGTTGAATCAAAACAACGAAGCCGAGCTCAACGTCCCTGAGGATACAGTGGAGTGGAGTGAAACT
* *
88549 TCAAATCCTATCTTCCTGGTGAGGTACAGAGAAGTCGGTCAAAACAGTG
66 TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAGTG
* * * * *
88598 TGTTGAATCAAAATAATGAAGTCGAGCTTAACGTCCCTGAGGATATAGTGGAGTGGAGTGAAACT
1 TGTTGAATCAAAACAACGAAGCCGAGCTCAACGTCCCTGAGGATACAGTGGAGTGGAGTGAAACT
* * * *
88663 TCAAATCCCTTCTTCCTGGTGAGATACAGAGAAGTGGGGCAATACAGTG
66 TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAGTG
** * * * *
88712 TGTTGAATCAAAACAGTGAAGCCGAGCTCAACATCCCTGAGGATACATTGGAGTAGAGTGAGACT
1 TGTTGAATCAAAACAACGAAGCCGAGCTCAACGTCCCTGAGGATACAGTGGAGTGGAGTGAAACT
* * * * *
88777 TCAAATCTCATCTTCTTTGTGAGGTATAGAGAAGTGGGTCAAAACAATG
66 TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAGTG
** * * *
88826 TGTTGAATCAAAACAACGAAGCTAAGTTCAACGTCCCTGAGGATAAAGTGGAGTGGAGTGAGACA
1 TGTTGAATCAAAACAACGAAGCCGAGCTCAACGTCCCTGAGGATACAGTGGAGTGGAGTGAAAC-
88891 TT-AAATCCCATCTTCCTGGTGAG
65 TTCAAATCCCATCTTCCTGGTGAG
88914 ATGTAGAGAA
Statistics
Matches: 774, Mismatches: 105, Indels: 10
0.87 0.12 0.01
Matches are distributed among these distances:
111 13 0.02
112 65 0.08
113 89 0.11
114 604 0.78
115 3 0.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.23
Consensus pattern (114 bp):
TGTTGAATCAAAACAACGAAGCCGAGCTCAACGTCCCTGAGGATACAGTGGAGTGGAGTGAAACT
TCAAATCCCATCTTCCTGGTGAGGTACAGAGAAGTGGGTCAAAACAGTG
Found at i:90672 original size:4 final size:4
Alignment explanation
Indices: 90663--90722 Score: 66
Period size: 4 Copynumber: 15.0 Consensus size: 4
90653 CCTATTTTAA
* * * * * *
90663 ATTT ATTT ATTT ATTA ATAT ATTA ATTT ATTT ATTT ATTA ATAT ATTA
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
90711 ATTT ATTT ATTT
1 ATTT ATTT ATTT
90723 TATGTATTAA
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (4 bp):
ATTT
Found at i:90676 original size:8 final size:8
Alignment explanation
Indices: 90662--90722 Score: 77
Period size: 8 Copynumber: 7.6 Consensus size: 8
90652 TCCTATTTTA
90662 AATTTATT
1 AATTTATT
*
90670 TATTTATT
1 AATTTATT
*
90678 AATATATT
1 AATTTATT
90686 AATTTATT
1 AATTTATT
*
90694 TATTTATT
1 AATTTATT
*
90702 AATATATT
1 AATTTATT
90710 AATTTATT
1 AATTTATT
*
90718 TATTT
1 AATTT
90723 TATGTATTAA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 44 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
AATTTATT
Found at i:90690 original size:24 final size:24
Alignment explanation
Indices: 90662--90722 Score: 122
Period size: 24 Copynumber: 2.5 Consensus size: 24
90652 TCCTATTTTA
90662 AATTTATTTATTTATTAATATATT
1 AATTTATTTATTTATTAATATATT
90686 AATTTATTTATTTATTAATATATT
1 AATTTATTTATTTATTAATATATT
90710 AATTTATTTATTT
1 AATTTATTTATTT
90723 TATGTATTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (24 bp):
AATTTATTTATTTATTAATATATT
Found at i:95031 original size:81 final size:81
Alignment explanation
Indices: 94938--95095 Score: 271
Period size: 81 Copynumber: 2.0 Consensus size: 81
94928 AATTAACAAG
* *
94938 AATATCAGGAAGATCGAGACCTACAAAAATTGGCATGAGAAGTTATCATTTGGTCTCTACGCTTA
1 AATATCAAGAAGATCGAGACCTACAAAAATTGGCATGAGAAGTTATCATTTGCTCTCTACGCTTA
95003 TTGAACATCAATTAAA
66 TTGAACATCAATTAAA
* * *
95019 AATATCAAGAAGATCGAGACCTAGAAAGATTGGCATGAGATGTTATCATTTGCTCTCTACGCTTA
1 AATATCAAGAAGATCGAGACCTACAAAAATTGGCATGAGAAGTTATCATTTGCTCTCTACGCTTA
95084 TTGAACATCAAT
66 TTGAACATCAAT
95096 CAAGATTTTC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (81 bp):
AATATCAAGAAGATCGAGACCTACAAAAATTGGCATGAGAAGTTATCATTTGCTCTCTACGCTTA
TTGAACATCAATTAAA
Found at i:96662 original size:49 final size:48
Alignment explanation
Indices: 96514--96680 Score: 126
Period size: 49 Copynumber: 3.4 Consensus size: 48
96504 TATAAAGGGA
* ** * *
96514 AAGG-TTGAGGCCGCAATGACGAACCCTGTACCTTA-AAAGATGAGATAGG
1 AAGGATTGAGGCCGCAACGGTGAA-CCTGTACCTTAGAAACAT--GATGGG
* * * * * * *
96563 TAGGATTGAGGCTGTAACGGTGAATCTAGTACCAT-GAAGATATGAAGGG
1 AAGGATTGAGGCCGCAACGGTGAACCT-GTACCTTAGAA-ACATGATGGG
96612 AAAGG-TTGAGGCCGCAACGGTGAACCTGGTACCTTAGAAACATGATGGG
1 -AAGGATTGAGGCCGCAACGGTGAACCT-GTACCTTAGAAACATGATGGG
*
96661 AAGGATTGAGGTCGCAACGG
1 AAGGATTGAGGCCGCAACGG
96681 GGAATCTAGA
Statistics
Matches: 91, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
48 4 0.04
49 56 0.62
50 28 0.31
51 3 0.03
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.20
Consensus pattern (48 bp):
AAGGATTGAGGCCGCAACGGTGAACCTGTACCTTAGAAACATGATGGG
Found at i:97187 original size:114 final size:114
Alignment explanation
Indices: 96977--97592 Score: 799
Period size: 114 Copynumber: 5.4 Consensus size: 114
96967 AAAGAAGTAG
* * * *
96977 AGCTCAATGTCCCTAAGGATATAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTTCAGGTGAGG
1 AGCTCAACGTCCCTAAGGATACAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAGG
* * * *
97042 TATAGAGAAGTGGGTCAATACAGTATATTGAATCAAAATAACGAAGCCG
66 TATAGAGAAGTGGGTCAAAACAGTGTGTTGAATCAAAATAACGAAGCCA
* * * *
97091 AGC-CTAACATCCCTAAGGATACAGTGGAGTAGAGTTAGACTTCAAATCCCATCTTCCTGGTGAG
1 AGCTC-AACGTCCCTAAGGATACAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAG
* *
97155 GTACAAAGAAGTGGGTCAAAACAGTGTGTTGAATCAAAATAACGAAGCCA
65 GTATAGAGAAGTGGGTCAAAACAGTGTGTTGAATCAAAATAACGAAGCCA
* *
97205 AGCTCAATGTCCCTGAGGATACAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAGG
1 AGCTCAACGTCCCTAAGGATACAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAGG
** * *
97270 TATAGAGAAACGGGTCAAAACAGTGTGTTGAATCAAAATAAAGAAGCCG
66 TATAGAGAAGTGGGTCAAAACAGTGTGTTGAATCAAAATAACGAAGCCA
* * *
97319 AGCTCAACGTCCCTAAGGATATAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTCCTAGTGAGA
1 AGCTCAACGTCCCTAAGGATACAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAGG
* * * * * *
97384 TACAGCGAAGTGGCTCAATACAATGTGTTGAAT-AAAATCAATGAAGCCA
66 TATAGAGAAGTGGGTCAAAACAGTGTGTTGAATCAAAAT-AACGAAGCCA
* * * * * * *
97433 AGCTCAACGTCCTTGAGAATACAGTGGAGTGGAGTGAGACTTGAAATCCCATATTCCCGGTGAGG
1 AGCTCAACGTCCCTAAGGATACAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAGG
* * *
97498 TATAGAGAAGTGGGTCAAAATAATGTGTTGAATCAAAACAACGAAGCC-
66 TATAGAGAAGTGGGTCAAAACAGTGTGTTGAATCAAAATAACGAAGCCA
* * * *
97546 -GCTCAACGTCCTTGAGGATATAGTGGAGTGGAGTGAGACTTCAAATC
1 AGCTCAACGTCCCTAAGGATACAGTGGAGTGGAGTGAAACTTCAAATC
97593 TAATCTTCTT
Statistics
Matches: 438, Mismatches: 60, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
112 44 0.10
113 6 0.01
114 383 0.87
115 5 0.01
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (114 bp):
AGCTCAACGTCCCTAAGGATACAGTGGAGTGGAGTGAAACTTCAAATCCCATCTTCCTGGTGAGG
TATAGAGAAGTGGGTCAAAACAGTGTGTTGAATCAAAATAACGAAGCCA
Found at i:101971 original size:378 final size:371
Alignment explanation
Indices: 101132--102267 Score: 1182
Period size: 379 Copynumber: 3.0 Consensus size: 371
101122 GAAGTTAAAA
* * * * ** *
101132 TTGACACAAAAGACATGACACAAAAGAAGATCAAAGAGAAGGGTTTGTATCA-AAAGTGAGGATG
1 TTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATAT-AGAAAGTGAGGATG
* * * * * *
101196 AAAACAGGAAGTGAAGCCTTTAAGGGAAATATACACGAATGTATTAGCACCCCAAACTCATTTTA
65 AAAACAGG-AGTGAAGCCTTTTAGGAAAATAGACATG-ATGTATAAGCACCCCAAACTCTTTTTA
* * * *
101261 TGTTTTGTTTCTCTTCTTTCTTCACTTG-GTGTTTATCTGAAACTTGAATTG-CAGTGAAATTTG
128 TGTTTTGTTTC-CTACTTTCTTCACTAGCGCG--TATCTG-AACTTGAATTGTGA-TGAAATTTG
* * *
101324 ACAATACAAAAGAAGTGGTAAATAATGTTTAAAAATAAAACAGAAACACATGTTTTTGGAGATAT
188 ACAATACAAAA-AAGTGGTAAATAATGTTAAAAAATAAAAGAGAAACATATGTTTTTGGAGATAT
*
101389 TTAAG-AGAACTTTTTTC-TTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAACTAT
252 TTAAGCA-AAC--TTTTCATTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATAT
* * * *
101452 GGTACGAAAC-AGTTATCTTGGTTGGCCTTTAACCAATTGGATATTCTTCATTTTCAGAC
314 GGTAGGAAACAAG-TATCTTGGTTAGCCTTTAACCAATTGGATACTCTT-ATTTTTAGAC
* * * * * *
101511 ATGACACAAAATACTTGAAACAGAAGAAGATCAAAGAAAACAATTTATGTAGAAAGTGAAGTTGA
1 TTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATAGAAAGTGAGGATGA
* * *
101576 AAATAGGGAGCGAAGCCTTTTAGGTAAATAGACATGATTGTATAAGCACCCCTAAACTCTTTTTA
66 AAACA-GGAGTGAAGCCTTTTAGGAAAATAGACATGA-TGTATAAGCACCCC-AAACTCTTTTTA
* *
101641 TGTTTTGTTTCCTACTTTCTTCACTCAGCGCGTATCTGATAGTTGAATTGTGATTAAATTTGACA
128 TGTTTTGTTTCCTACTTTCTTCACT-AGCGCGTATCTGA-ACTTGAATTGTGATGAAATTTGACA
* * *
101706 ATACAAAACAAG-GGATAAATAAAT-TTCAAAAATAAAAGAGAAACATATGTTATTGGTGATATT
191 ATACAAAA-AAGTGG-TAAAT-AATGTTAAAAAATAAAAGAGAAACATATGTTTTTGGAGATATT
* * * *
101769 TAAGCAAACTTTCCATTGAAAGATTAGAGTCATAATTACAATGGAAACAACAAACAAATATGCTA
253 TAAGCAAACTTTTCATTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATGGTA
* * *
101834 GGAAGCAAGTATCTTGGTTAGCCTCTAACCAATTGGATACTCTGTGTTTTTAGAC
318 GGAAACAAGTATCTTGGTTAGCCTTTAACCAATTGGATACTCT-TATTTTTAGAC
* * * *
101889 TTGACACAAAATACTTGAAACAAAAGATGATCAAAGAAAATAGTTTATATTGAAAGTGAGGCTGA
1 TTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATAGAAAGTGAGGATGA
* * * * *
101954 AAACATGGATTGAAGCC-TTTAAGAATAATAGACATGAT-TATAAACAACCCAAAACCCTTTTTA
66 AAACA-GGAGTGAAGCCTTTTAGGAA-AATAGACATGATGTATAAGC-ACCCCAAACTCTTTTTA
* * * ** * *
102017 TGTTTT-TTTCC-ACTGTTTTTTCACTTGACTCGTATAGGGAACTTGAATTGTGGTGAAAGTTGA
128 TGTTTTGTTTCCTAC--TTTCTTCACTAG-CGCGTAT-CTGAACTTGAATTGTGATGAAATTTGA
** * * * *
102080 CAACGCAAAAAAGTGGTATATAATGTTAAAAAATAAAAGAAAAAACTTAATGTTTTTGAAGATAT
189 CAATACAAAAAAGTGGTAAATAATGTTAAAAAATAAAAG-AGAAACAT-ATGTTTTTGGAGATAT
* *
102145 TTAAGCGAAA-TTTTCAATGAAAGATTGGAGTCATAATTACAATGGAAACAATAGACAAATATGG
252 TTAAGC-AAACTTTTCATTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATGG
* * * * ** *
102209 TAGGAAACATGTATCATGGTTCGCATTTAAGAAATTGGATACACTCTATTTTTAGAC
316 TAGGAAACAAGTATCTTGGTTAGCCTTTAACCAATTGGATACTCT-TATTTTTAGAC
102266 TT
1 TT
102268 TTAAAATGGG
Statistics
Matches: 634, Mismatches: 98, Indels: 52
0.81 0.12 0.07
Matches are distributed among these distances:
374 5 0.01
375 26 0.04
376 73 0.12
377 132 0.21
378 177 0.28
379 189 0.30
380 30 0.05
381 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (371 bp):
TTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATAGAAAGTGAGGATGA
AAACAGGAGTGAAGCCTTTTAGGAAAATAGACATGATGTATAAGCACCCCAAACTCTTTTTATGT
TTTGTTTCCTACTTTCTTCACTAGCGCGTATCTGAACTTGAATTGTGATGAAATTTGACAATACA
AAAAAGTGGTAAATAATGTTAAAAAATAAAAGAGAAACATATGTTTTTGGAGATATTTAAGCAAA
CTTTTCATTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATGGTAGGAAACAA
GTATCTTGGTTAGCCTTTAACCAATTGGATACTCTTATTTTTAGAC
Found at i:102250 original size:377 final size:375
Alignment explanation
Indices: 101132--102267 Score: 1123
Period size: 378 Copynumber: 3.0 Consensus size: 375
101122 GAAGTTAAAA
* * * * *** * * *
101132 TTGACACAAAAGACATGACACAAAAGAAGATCAAAGAGAAGGGTTTGTATCA-AAAGTGAGGATG
1 TTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAATTTATAT-AGAAAGTGAAGCTG
* * ** * * * * * * * *
101196 AAAACAGGAAGTGAAGCCTTTAAGGGAAATATACACGAATGTATTAGC-ACCCCAAACTCATTTT
65 AAAACAGGGAGCGAAGCCTTTAAGATAAATAGACATGATTGTATAAACAACCCAAAACCCTTTTT
* ** * ** * **
101260 ATGTTTTGTTTCTCTTCTTTCTTCACTTGGTGTTTATCTGAAACTTGAATTGCAGTGAAATTTGA
130 ATGTTTTGTTTC-CTACTTTCTTCACTCAGCGCGTATC-GGAACTTGAATTGTGGTGAAATTTGA
* * *
101325 CAATACAAAAGAAGTGGTAAATAATGTTTAAAAATAAAACAGAAAC-ACATGTTTTTGGAGATAT
193 CAATACAAAACAAGTGGTAAATAATGTTAAAAAATAAAAGAGAAACTA-ATGTTTTTGGAGATAT
* * *
101389 TTAAGAGAACTTTTTTC-TTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAACTATG
257 TTAAGCGAA--ATTTTCATTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATG
* * * *
101453 GTACGAAACAGTTATCTTGGTTGGCCTTTAACCAATTGGATATTCTTCATTTTCAGAC
320 GTAGGAAACAG-TATCTTGGTTAGCCTTTAACCAATTGGATACTCTT-ATTTTTAGAC
* * * *
101511 ATGACACAAAATACTTGAAACAGAAGAAGATCAAAGAAAACAATTTATGTAGAAAGTGAAGTTGA
1 TTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAATTTATATAGAAAGTGAAGCTGA
* * * * * * *
101576 AAATAGGGAGCGAAGCCTTTTAGGTAAATAGACATGATTGTATAAGCACCCCTAAACTCTTTTTA
66 AAACAGGGAGCGAAGCCTTTAAGATAAATAGACATGATTGTATAAACAACCCAAAACCCTTTTTA
* * * *
101641 TGTTTTGTTTCCTACTTTCTTCACTCAGCGCGTATCTGATAGTTGAATTGTGATTAAATTTGACA
131 TGTTTTGTTTCCTACTTTCTTCACTCAGCGCGTATCGGA-ACTTGAATTGTGGTGAAATTTGACA
* * *
101706 ATACAAAACAAG-GGATAAATAAAT-TTCAAAAATAAAAGAGAAAC-ATATGTTATTGGTGATAT
195 ATACAAAACAAGTGG-TAAAT-AATGTTAAAAAATAAAAGAGAAACTA-ATGTTTTTGGAGATAT
* * * *
101768 TTAAGC-AAACTTTCCATTGAAAGATTAGAGTCATAATTACAATGGAAACAACAAACAAATATGC
257 TTAAGCGAAA-TTTTCATTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATGG
* * *
101832 TAGGAAGCAAGTATCTTGGTTAGCCTCTAACCAATTGGATACTCTGTGTTTTTAGAC
321 TAGGAAAC-AGTATCTTGGTTAGCCTTTAACCAATTGGATACTCT-TATTTTTAGAC
* * * * *
101889 TTGACACAAAATACTTGAAACAAAAGATGATCAAAGAAAATAGTTTATATTGAAAGTGAGGCTGA
1 TTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAATTTATATAGAAAGTGAAGCTGA
* **
101954 AAACATGGATTGAAGCCTTTAAGA-ATAATAGACATGA-T-TATAAACAACCCAAAACCCTTTTT
66 AAACAGGGAGCGAAGCCTTTAAGATA-AATAGACATGATTGTATAAACAACCCAAAACCCTTTTT
* * * * *
102016 ATGTTTT-TTTCC-ACTGTTTTTTCACT-TGACTCGTATAGGGAACTTGAATTGTGGTGAAAGTT
130 ATGTTTTGTTTCCTAC--TTTCTTCACTCAG-CGCGTAT-CGGAACTTGAATTGTGGTGAAATTT
** * * *
102078 GACAACGCAAAA-AAGTGGTATATAATGTTAAAAAATAAAAGAAAAAACTTAATGTTTTTGAAGA
191 GACAATACAAAACAAGTGGTAAATAATGTTAAAAAATAAAAG-AGAAAC-TAATGTTTTTGGAGA
* *
102142 TATTTAAGCGAAATTTTCAATGAAAGATTGGAGTCATAATTACAATGGAAACAATAGACAAATAT
254 TATTTAAGCGAAATTTTCATTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATAT
* * * ** *
102207 GGTAGGAAACATGTATCATGGTTCGCATTTAAGAAATTGGATACACTCTATTTTTAGAC
319 GGTAGGAAACA-GTATCTTGGTTAGCCTTTAACCAATTGGATACTCT-TATTTTTAGAC
102266 TT
1 TT
102268 TTAAAATGGG
Statistics
Matches: 626, Mismatches: 110, Indels: 44
0.80 0.14 0.06
Matches are distributed among these distances:
374 5 0.01
375 26 0.04
376 77 0.12
377 122 0.19
378 184 0.29
379 184 0.29
380 28 0.04
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (375 bp):
TTGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAATTTATATAGAAAGTGAAGCTGA
AAACAGGGAGCGAAGCCTTTAAGATAAATAGACATGATTGTATAAACAACCCAAAACCCTTTTTA
TGTTTTGTTTCCTACTTTCTTCACTCAGCGCGTATCGGAACTTGAATTGTGGTGAAATTTGACAA
TACAAAACAAGTGGTAAATAATGTTAAAAAATAAAAGAGAAACTAATGTTTTTGGAGATATTTAA
GCGAAATTTTCATTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATGGTAGGA
AACAGTATCTTGGTTAGCCTTTAACCAATTGGATACTCTTATTTTTAGAC
Found at i:111204 original size:17 final size:17
Alignment explanation
Indices: 111178--111215 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
111168 AGGCAAACCA
*
111178 ATTTTATTTTTATTTTT
1 ATTTTATTTTAATTTTT
*
111195 ATTTTGTTTTAATTTTT
1 ATTTTATTTTAATTTTT
111212 -TTTT
1 ATTTT
111216 CTTGCATGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (17 bp):
ATTTTATTTTAATTTTT
Found at i:111805 original size:15 final size:15
Alignment explanation
Indices: 111785--111833 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
111775 TTCTCTATCC
* *
111785 AAAAAAATGAAAAAT
1 AAAAAAAAGAAAAAG
*
111800 AAAAAAAAGGAAAAG
1 AAAAAAAAGAAAAAG
*
111815 AAAAAAAA-AAAGAG
1 AAAAAAAAGAAAAAG
111829 AAAAA
1 AAAAA
111834 CTTTAATGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 9 0.31
15 20 0.69
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:111806 original size:16 final size:16
Alignment explanation
Indices: 111785--111823 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
111775 TTCTCTATCC
*
111785 AAAAAAATGAAAA-ATA
1 AAAAAAAGGAAAAGA-A
111801 AAAAAAAGGAAAAGAA
1 AAAAAAAGGAAAAGAA
111817 AAAAAAA
1 AAAAAAA
111824 AAGAGAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.95
17 1 0.05
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (16 bp):
AAAAAAAGGAAAAGAA
Found at i:115198 original size:14 final size:14
Alignment explanation
Indices: 115179--115207 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
115169 AGGAACTTAA
115179 ACTTGACACAAAAG
1 ACTTGACACAAAAG
115193 ACTTGACACAAAAG
1 ACTTGACACAAAAG
115207 A
1 A
115208 AGATCAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.14
Consensus pattern (14 bp):
ACTTGACACAAAAG
Found at i:115931 original size:359 final size:359
Alignment explanation
Indices: 115420--116121 Score: 907
Period size: 359 Copynumber: 2.0 Consensus size: 359
115410 AAAGAGAAAC
* *
115420 ACATGTTTTTGGAGATATTTAAGCGAACTTTCTGTTGAAAGTTTAGAGTGCAACTACAATGGAAA
1 ACATGTGTTTGGAGATATTTAAGCGAACTTTCTGTTGAAAGATTAGAGTGCAACTACAATGGAAA
* * * * *
115485 CAATAGACAAATATGGTACAAGATAGTTATCTTGGTTGGCCTCTAACCAATTGGATAAACTTCAT
66 CAACAGACAAATATGCTACAAGACAGGTATCTTGGTTGGCCTCTAACCAATTGGATAAACTGCAT
*
115550 TTTCAAACACTACAAAAAATACTCGAAACAAAA-AAAGATCAAAGAAAACAATTTATATCGAAA-
131 TTTCAAACACGACAAAAAATACTCGAAACAAAATAAA-ATCAAAGAAAACAATTTATATC-AAAT
* * * * *
115613 GTGAAGTTGAAAATAGGGAGAGAAACCTTTTAGGGAAATAGACATGATTATATCAGCATCCCC-A
194 GTGAAGTTGAAAATAGGGAGAGAAACCTTTAAGAGAAATAGAAATGATTATATAAACATCCCCAA
** * ** * *
115677 AATTCTTTTTATGTTTCGTTTT-C-CCCCTTTTTTCACTCGACACGTATCTGAAAGTTGAATTGT
259 AACCCATTTTATGTTT--TTTTCCACCCCTTTTTTCACTCGACACGTATAGGAAACTTGAATTGC
* * *
115740 GGTGCAATTTGACAATGCAAAAGAAATGATAAATAAAT
322 AGTGAAAGTTGACAATGCAAAAGAAATGATAAATAAAT
* * *
115778 ACATGTGTTTGGTGATATTTAAGTGAACTTT-TCGTTGAAAGATTAGAGT-CATATTTACAATGG
1 ACATGTGTTTGGAGATATTTAAGCGAACTTTCT-GTTGAAAGATTAGAGTGCA-A-CTACAATGG
* * **
115841 AAACAACAGACAAATATTCTAGGAAG-CAGGTATCTTGGTTGGCCTCTAACCAATTGGATACTCT
63 AAACAACAGACAAATATGCTA-CAAGACAGGTATCTTGGTTGGCCTCTAACCAATTGGATAAACT
* * * * * *
115905 GCATTTTCAGACTCGACAAAAAATACTTGAAACAAAATATAATCAAAGAAAATAGTTTATATCAA
127 GCATTTTCAAACACGACAAAAAATACTCGAAACAAAATAAAATCAAAGAAAACAATTTATATCAA
* * * *
115970 ATGTGAGGTTGAAAATAGGGAGCGAAGCCTTTAAGAGAAATAGAAATGATTGTATAAACATCCCC
192 ATGTGAAGTTGAAAATAGGGAGAGAAACCTTTAAGAGAAATAGAAATGATTATATAAACATCCCC
*
116035 AAAACCCATTTTATGTTTTTTTCCACCCCTTTTTTCACTCGACTCGTATAGGAAACTTGAATTGC
257 AAAACCCATTTTATGTTTTTTTCCACCCCTTTTTTCACTCGACACGTATAGGAAACTTGAATTGC
116100 AGTGAAAGTTGACAATGCAAAA
322 AGTGAAAGTTGACAATGCAAAA
116122 CAGGTGGTAT
Statistics
Matches: 294, Mismatches: 41, Indels: 16
0.84 0.12 0.05
Matches are distributed among these distances:
357 3 0.01
358 51 0.17
359 167 0.57
360 73 0.25
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (359 bp):
ACATGTGTTTGGAGATATTTAAGCGAACTTTCTGTTGAAAGATTAGAGTGCAACTACAATGGAAA
CAACAGACAAATATGCTACAAGACAGGTATCTTGGTTGGCCTCTAACCAATTGGATAAACTGCAT
TTTCAAACACGACAAAAAATACTCGAAACAAAATAAAATCAAAGAAAACAATTTATATCAAATGT
GAAGTTGAAAATAGGGAGAGAAACCTTTAAGAGAAATAGAAATGATTATATAAACATCCCCAAAA
CCCATTTTATGTTTTTTTCCACCCCTTTTTTCACTCGACACGTATAGGAAACTTGAATTGCAGTG
AAAGTTGACAATGCAAAAGAAATGATAAATAAAT
Found at i:118694 original size:959 final size:952
Alignment explanation
Indices: 116487--118821 Score: 2890
Period size: 959 Copynumber: 2.4 Consensus size: 952
116477 TAGACAATTC
* * * * * * * *
116487 TTTTGCCACCCTTT-TTACACTCAGCGCAAATAGGAAACTTGAATTGTTGTGAATGTTGATAATG
1 TTTTTCCACCCTTTATT-CACTCAACTCATATAGCAAACTTGAATTGTAGTGAAAGTTGACAATG
* * * *
116551 CAAAACAAGTGGTATATAATGTTAGAAAAATAAAAGAAAAACTAAAGTTTTTGAAGATATTTAAA
65 CAAAACAAGTGGTATATAATGTTA-AAAAATAAAAAAAAAAATAATGTTTTTGAAGATATTTAAG
*
116616 CAAAATTTCCAATGTAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGGTAGGAA
129 CAAAATTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGGTAGGAA
** * * * **
116681 ACATGTATCATTTTTGGCCTCTAACAAATTGGATACTCTCCATTTTCAGACTTTTTAAATAGGTA
194 ACATGTATCATGGTTGGCCTCTAACAAATTAGATACTCTCAATTTTCAGACTTTTTAAATGGGCC
*
116746 AACCTCGATTTTTGTCTTCATCTCTCTTTTTATTTATTTTCCCCCTCAATATTGCAATATGTTGT
259 AACCTCGA-TTTTGTCTTCA-CTCTCTTTTTATTTATTTTCCCCCTCAATATTGCAATATGTTGC
* * * * * * *
116811 ACTGTAGTTACTCTTTATTTATTTATATGGATATTCTTGAAACATATAGGAACTTGTCACATTTA
322 AATGCAATTACTCTCTATTTATTTATATGGATATTCTGGAAACATATAGAAACTTGGCACATTTA
* ** * * *
116876 CTGTAAGCCATTAGTTTATTGTTGAGATTTTTTAAACAAATTTTTCTGTATAAATTCATTAAAGA
387 CTGTGAGCTGTTAGTTTCTTCTTGAGA-TTTTTAAACAAATTTTTCTGAATAAATTCATTAAAGA
* * * * * * * *
116941 ACATAAACTTTACACAAAAGAAGATCAAAGAAAATGGTTTGTATCAAAAGTGACGATTAAAATAG
451 ACATAAACTTGACACAAAAGAAGATCAAAGAAAAGGGTTTATATCAAAAGGGACAATGAAAACAA
* * *
117006 GGAGTGAAGCCTTTAAGAGAAATATACACGATTGTATAAGCACCCCAAACATGTTTTATGTTTCG
516 GGAATGAAGCCTTTAAGAGAAATAAACACGATTGTATAAGCACCCCAAACATGTTTTATGTTTCA
* * * ** * *
117071 TTTCCCCTCTTTTTTCACTGGTGCATATTTGAAACTTGAATTGTTGTGAAATTTGACAATGCAAA
581 TTTCCCCCCATTATTCACTGACGCATATTTGAAACTTGAATTGTGGTGAAATTTAACAATGCAAA
* *
117136 ACAAATGATAAATAATGTTTAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTAAGCGAAC
646 ACAAATGATAAATAATGTTAAAAAATAAAAGAGAAACACATATTTTTGGAGATATTTAAGCGAAC
* ** * * * *
117201 TTTCCGTTAAAAGATTAGAGTCATAATTACAATGGAAGCAACAGACAAATATGGTACGAAACAGT
711 ATTCCAATAAAACATTAGAGTCATAATTACAAGGGAAACAACAGACAAAGATGGTACGAAACAGT
* * * *
117266 TATCTTGGTTGGCCTCTAACCAATTGGATTTTCTGCATTTTCAGACAAGACACAGAATAATTGAA
776 TATCTTGGTTGGCCTCTAACCAATTGGATTCTCTGCAATTTCAAACAAGACACAAAATAATTGAA
* ** * * *
117331 ACAAATGGTCAAATAAAACAGTTTATATTGAAAGTGAAGCTGAAAATAGGGAGCGAAGCCTTTAA
841 ACAAATGGTCAAAGAAAACAGTTTATATAAAAAGTGAAGATGAAAACAGGGAGAGAAGCCTTTAA
117396 GAGAAATAGACATGATTATATAAACACCCCAAAACCCTTTTAATGTT
906 GAGAAATAGACATGATTATATAAACACCCCAAAACCCTTTTAATGTT
* * * * * *
117443 TTTTTCCACCGTTTTTTCACTCGACTCGTATAGGAAACTTGAATTGTAGTGAAAGTTGACAATGT
1 TTTTTCCACCCTTTATTCACTCAACTCATATAGCAAACTTGAATTGTAGTGAAAGTTGACAATGC
117508 AAAACAAGTGGTATATAATGTTAAAAAATAAAAGAAAAAAACTAATGTTTTTGAAGATATTTAAG
66 AAAACAAGTGGTATATAATGTTAAAAAATAAAA-AAAAAAA-TAATGTTTTTGAAGATATTTAAG
* * *
117573 AAAAATTTTCAATGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGGTTGGAA
129 CAAAATTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGGTAGGAA
* * * * * ** *
117638 ACATGTATCTTGGTTCGCCTCTAAGAAATTTGATACACTCTTTTTTTAGACTTTTTAAATGGGTC
194 ACATGTATCATGGTTGGCCTCTAACAAATTAGATACTCTCAATTTTCAGACTTTTTAAATGGG-C
* ** *
117703 C-GCCTCGATTTTGTCTTCACTTCTCTTTTTTATTTATTCCCCCCCTCAATATTGCGATATGTTG
258 CAACCTCGATTTTGTCTTCAC-TCTC-TTTTTATTTATTTTCCCCCTCAATATTGCAATATGTTG
* * * *
117767 CAATGCAATTACACTCTGTTTATTTATAGGGATATTCTGGAAACATATAGAAACTTGGCACTTTT
321 CAATGCAATTACTCTCTATTTATTTATATGGATATTCTGGAAACATATAGAAACTTGGCACATTT
* * * *
117832 ACTGTGAGCTGTTACTTTCTTCTTGAGATTTTTAGACAATTTTTTAC-GAATAAATTCATTATAG
386 ACTGTGAGCTGTTAGTTTCTTCTTGAGATTTTTAAACAAATTTTT-CTGAATAAATTCATTAAAG
* * *
117896 AACTTAAACTTGACACAAAAGAAGATCAAAGAATAGGGTTTATATCAAAAGGGATAATGAAAACA
450 AACATAAACTTGACACAAAAGAAGATCAAAGAAAAGGGTTTATATCAAAAGGGACAATGAAAACA
* * * * * *
117961 AGTAATGAAGCCTTTAAGGGAAATAAATACGATTGTATAAGTATCCCTAAATACT-TTTTATGTT
515 AGGAATGAAGCCTTTAAGAGAAATAAACACGATTGTATAAGCA-CCCCAAACA-TGTTTTATGTT
* * *
118025 TTATTTCCCCACCATTATTCACTCGACGCGTATTTGAAACTTGAATTGTGGTGAAGTTTAACAAT
578 TCATTTCCCC-CCATTATTCACT-GACGCATATTTGAAACTTGAATTGTGGTGAAATTTAACAAT
** * * ** *
118090 GCAAAACACGTGATAAATAATGTTAAAAAATAAAAGAGAAATACATATTTTTTGTTATATTTAGG
641 GCAAAACAAATGATAAATAATGTTAAAAAATAAAAGAGAAACACATATTTTTGGAGATATTTAAG
* * * *
118155 CGAACATTCCAATGAAACATTAGAGTCGTAATTACAAGGGAAACAACCGACAAAGATGGTAGGAA
706 CGAACATTCCAATAAAACATTAGAGTCATAATTACAAGGGAAACAACAGACAAAGATGGTACGAA
* ** *
118220 GCAGTTATCTTGGTTGGCCTCTAACCAATTGGATTCTCTGCAATTTCAAACCTGACACAAAATAC
771 ACAGTTATCTTGGTTGGCCTCTAACCAATTGGATTCTCTGCAATTTCAAACAAGACACAAAATAA
* * * *
118285 TTGTAACGAAA-GAAGATCAAAGAAAATAGTTTATATAAAAAGTGAGGATGAGAACAGGGAGAGA
836 TTGAAAC-AAATG--G-TCAAAGAAAACAGTTTATATAAAAAGTGAAGATGAAAACAGGGAGAGA
* * ** *
118349 AGCCTTTAA-AGGAAATAGACATGGTTGTATAAGA-ACCCC-AAATTCTTTTTATGTT
897 AGCCTTTAAGA-GAAATAGACATGATTATATAA-ACACCCCAAAACCCTTTTAATGTT
* * *
118404 TTTCTTCCACCCTTTATTCACT-AATTGCATATAGCAATCTTGAATTGTGGTGAAAGTTGACAAT
1 TTT-TTCCACCCTTTATTCACTCAACT-CATATAGCAAACTTGAATTGTAGTGAAAGTTGACAAT
* * *
118468 GCAAAACAAGTGGTATATAATGTTCAAAAATAAAACAAAAAATAATGTTTTTGAAAATATTTAAG
64 GCAAAACAAGTGGTATATAATGTTAAAAAATAAAAAAAAAAATAATGTTTTTGAAGATATTTAAG
* * * * * * *
118533 CAAACTTTCCAATGAAAGATTAGACTCATTATTACAATGGAAACAACAAAAAAATATGGCAGGGA
129 CAAAATTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGGTAGGAA
* ** * * * * * *
118598 GCGGGTATCATGGTTGGCCTTTAACTAATTAGATACTCTGAATTTTCGGACTCTTAAAATGGGCC
194 ACATGTATCATGGTTGGCCTCTAACAAATTAGATACTCTCAATTTTCAGACTTTTTAAATGGGCC
* * * * *
118663 AACCTCGATTTTGTCTTCACATCTCTTTTTATTTATTTTCCGCATTAGTATTGCTATATGTTGCA
259 AACCTCGATTTTGTCTTCAC-TCTCTTTTTATTTATTTTCCCCCTCAATATTGCAATATGTTGCA
*
118728 ATGCAATTACTCTCTATTTATTTATATGGATATTCTGGAAACATATAGAAACTCGGCACATTTAC
323 ATGCAATTACTCTCTATTTATTTATATGGATATTCTGGAAACATATAGAAACTTGGCACATTTAC
*
118793 T-TGGAGCTGTCAGTTTCTTCTTGAGATTT
388 TGT-GAGCTGTTAGTTTCTTCTTGAGATTT
118822 CTTTTAAACA
Statistics
Matches: 1172, Mismatches: 186, Indels: 39
0.84 0.13 0.03
Matches are distributed among these distances:
955 11 0.01
956 215 0.18
957 277 0.24
958 11 0.01
959 329 0.28
960 148 0.13
961 26 0.02
962 154 0.13
963 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.33
Consensus pattern (952 bp):
TTTTTCCACCCTTTATTCACTCAACTCATATAGCAAACTTGAATTGTAGTGAAAGTTGACAATGC
AAAACAAGTGGTATATAATGTTAAAAAATAAAAAAAAAAATAATGTTTTTGAAGATATTTAAGCA
AAATTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGGTAGGAAAC
ATGTATCATGGTTGGCCTCTAACAAATTAGATACTCTCAATTTTCAGACTTTTTAAATGGGCCAA
CCTCGATTTTGTCTTCACTCTCTTTTTATTTATTTTCCCCCTCAATATTGCAATATGTTGCAATG
CAATTACTCTCTATTTATTTATATGGATATTCTGGAAACATATAGAAACTTGGCACATTTACTGT
GAGCTGTTAGTTTCTTCTTGAGATTTTTAAACAAATTTTTCTGAATAAATTCATTAAAGAACATA
AACTTGACACAAAAGAAGATCAAAGAAAAGGGTTTATATCAAAAGGGACAATGAAAACAAGGAAT
GAAGCCTTTAAGAGAAATAAACACGATTGTATAAGCACCCCAAACATGTTTTATGTTTCATTTCC
CCCCATTATTCACTGACGCATATTTGAAACTTGAATTGTGGTGAAATTTAACAATGCAAAACAAA
TGATAAATAATGTTAAAAAATAAAAGAGAAACACATATTTTTGGAGATATTTAAGCGAACATTCC
AATAAAACATTAGAGTCATAATTACAAGGGAAACAACAGACAAAGATGGTACGAAACAGTTATCT
TGGTTGGCCTCTAACCAATTGGATTCTCTGCAATTTCAAACAAGACACAAAATAATTGAAACAAA
TGGTCAAAGAAAACAGTTTATATAAAAAGTGAAGATGAAAACAGGGAGAGAAGCCTTTAAGAGAA
ATAGACATGATTATATAAACACCCCAAAACCCTTTTAATGTT
Found at i:120777 original size:429 final size:429
Alignment explanation
Indices: 119929--120793 Score: 1085
Period size: 429 Copynumber: 2.0 Consensus size: 429
119919 CCATTTTATG
* *
119929 TTTTTTTCCACCCCTTTTTTCACTCGACTCGCATAAGAAACTTGAATTGCAGTGAAAGTTGACAA
1 TTTTTTTCCACCCATTTTTTCACTCGAC-CGCATAAGAAACTTGAATTGCACTGAAAGTTGACAA
** *
119994 TGCAAAACAAGTGATATATAATGTTAAAAAATAAAAGAAAAAAACTACTATTTTTGAAGATATTT
65 TGCAAAACAAGTGATATATAACATTAAAAAATAAAAGAAAAAAACTAATATTTTTGAAGATATTT
* * * * * *
120059 AAGCGAAATTTTCAATGAAAGATTAGAGCCATAATTACAATGGATACAACAGACAAATATGATAG
130 AAACAAAATTTCCAATGAAAGATTAGAGCCATAATTACAATGGAAACAACAGAAAAATATGATAA
* * ** * *
120124 GAAACATGCATCATGGTTAACATGTAAGAAATTGGATACACTTTATTTTTAGACTTTTTAAATGG
195 GAAACATGCATCATGGTTAACATCTAACAAATTGGATACACTCCATTTTCAAACTTTTTAAATGG
* ** * * *
120189 GTCTGCCTCGATTTTGTGTTCACATTTTTTTATTTATTTCCACCCCTCAATATTGCTATATGTTA
260 ATCAACCTCAATTTTGTCTTCACATTTTTTTATTTATTTCCACCCCTCAATATTGCAATATGTTA
* * * * *
120254 AATTGTAATTACTCTCTATTTATTTATATGGATATTCTGGAAACATATAGAAAGTTGGCACTTTT
325 AAGTGCAATTACTCTCTAATTATTTATATGGATATTCTGGAAACATATAGAAACTTGGCACATTT
** * *
120319 ACCATGAGCTGTTACTTTGTTCTTGAGATTTTTTAGACAA
390 ACCATGAGCCCTTACTTTATTCTTGAGATTTTTTAAACAA
*** * *
120359 TTTTTTTGCCA-CCATTTTTT-ACTCGA-CGCATATAGGAAACTTGAATTTTTCTGAATGTTGAT
1 TTTTTTT-CCACCCATTTTTTCACTCGACCGCATA-A-GAAACTTGAATTGCACTGAAAGTTGAC
* * *
120421 AATGCAAAACAAGTGGTATATAACATTAAAAAA-ATTAA-AAAAAAACTAATGTTTTTGAAGATA
63 AATGCAAAACAAGTGATATATAACATTAAAAAATA-AAAGAAAAAAACTAATATTTTTGAAGATA
* *
120484 TTTAAACAAAATTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAACAGAAAAATATGG
127 TTTAAACAAAATTTCCAATGAAAGATTAGAGCCATAATTACAATGGAAACAACAGAAAAATATGA
* ** * *
120549 TAAGAAACATGTATCATGGTTGGCCTCTAACAAATTGGATACTCTCCATTTTCAAACTTTTTAAA
192 TAAGAAACATGCATCATGGTTAACATCTAACAAATTGGATACACTCCATTTTCAAACTTTTTAAA
* **
120614 TGGATCAACCTCAATTTTGTCTTCATATGTCTTTTTATTTATTT-TTCCCCTCAATATTGCAATA
257 TGGATCAACCTCAATTTTGTCTTCACAT-T-TTTTTATTTATTTCCACCCCTCAATATTGCAATA
** * * * *
120678 TGTTGCAGTGCAGTTACTCTCTAATTATTTATATGGATATTCTTGAAACATATAGGAACTTGTCA
320 TGTTAAAGTGCAATTACTCTCTAATTATTTATATGGATATTCTGGAAACATATAGAAACTTGGCA
** *
120743 CATTTACTGTGAGCCCTTAGTTTATTCTTGAGATTTTTTAAACAA
385 CATTTACCATGAGCCCTTACTTTATTCTTGAGATTTTTTAAACAA
*
120788 ATTTTT
1 TTTTTT
120794 ATGTATAAAT
Statistics
Matches: 369, Mismatches: 60, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
427 6 0.02
428 158 0.43
429 174 0.47
430 28 0.08
431 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (429 bp):
TTTTTTTCCACCCATTTTTTCACTCGACCGCATAAGAAACTTGAATTGCACTGAAAGTTGACAAT
GCAAAACAAGTGATATATAACATTAAAAAATAAAAGAAAAAAACTAATATTTTTGAAGATATTTA
AACAAAATTTCCAATGAAAGATTAGAGCCATAATTACAATGGAAACAACAGAAAAATATGATAAG
AAACATGCATCATGGTTAACATCTAACAAATTGGATACACTCCATTTTCAAACTTTTTAAATGGA
TCAACCTCAATTTTGTCTTCACATTTTTTTATTTATTTCCACCCCTCAATATTGCAATATGTTAA
AGTGCAATTACTCTCTAATTATTTATATGGATATTCTGGAAACATATAGAAACTTGGCACATTTA
CCATGAGCCCTTACTTTATTCTTGAGATTTTTTAAACAA
Found at i:121685 original size:380 final size:378
Alignment explanation
Indices: 120847--121947 Score: 1231
Period size: 380 Copynumber: 2.9 Consensus size: 378
120837 TTAACACCAG
* * * * *
120847 AGAAGATCAAAGAAAATGGTTCATATCAAAAGTGAGGATGAAAACAGGGAGTGAAGCGTTTAAGG
1 AGAAGATCAAAGAAAATAGTT-ATATCGAAAGTGAGGTTGAAAACAGGGAGCGAAGCCTTTAAGG
* * * * * *
120912 GAAATATACGTGATTGTTTAAGCACCCCAAACTCTTTTTATGTTTCGTTTCCCCTCTTTTTTTAC
65 GAAATACACATGATTGTATAAGCACCCCAAACTCTTTTTATGTTTTGTTTCCCCCCTTTTTTCAC
* * * * *
120977 TC-G-ATGCGTATCTGAAACTTGAATTACGTTGAAATTTGACAATGCATAACAAGTAATAAATAA
130 TCAGCAT-CGTATTTGAAAGTTGAATTACGGTGAAATTTGACAATGCAAAACAAGTGATAAATAA
* * * * *
121040 TGTTTAAAAATAAAAGAGAAACATATGCTTTTGGAT-ATATTTAAGCGAACTTTTCGTTGAAAGA
194 TGTTAAAAAATAAAAGAAAAACACATGTTTTTGG-TGATATTTAAGCGAACTTTTCATTGAAAGA
* *
121104 TTAGAGTCATAATTACAATGGAAACAACAGACAAATATGGTACGAAACAGTTATCTTGGTTGGCC
258 TTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCTACGAAACAGGTATCTTGGTTGGCC
* * *
121169 TCTAACCAATTGGATATTCTTCATTTTTAGAAAATACACAAAATACTTGAAACAAA
323 TCTAACCAATTGGATACTCTGCATTTTCAGAAAATACACAAAATACTTGAAACAAA
* * * * * * *
121225 AGAAGATCAAAGAAAACAATTTATATCGAAAGTGAAGTTGAAAATAGAGAGCGAAGCTTTTTAGG
1 AGAAGATCAAAGAAAA-TAGTTATATCGAAAGTGAGGTTGAAAACAGGGAGCGAAGCCTTTAAGG
*
121290 GAAATAGACATGATTGTATAAGCATCCCCAAACTCTTTTTATGTTTTGTTTCCCCCGCTTTTTTC
65 GAAATACACATGATTGTATAAGCA-CCCCAAACTCTTTTTATGTTTTGTTTCCCCC-CTTTTTTC
**
121355 ACTCAGCAT-GTATTTGAAAGTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGTGATAAATA
128 ACTCAGCATCGTATTTGAAAGTTGAATTACGGTGAAATTTGACAATGCAAAACAAGTGATAAAT-
* * * *
121419 AAT-TTCAAAAATAAATGAAAAACACATGTTTTTGGTGATATTTAAGAGAACTTTTCATTGAAAT
192 AATGTTAAAAAATAAAAGAAAAACACATGTTTTTGGTGATATTTAAGCGAACTTTTCATTGAAAG
* * *
121483 ATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCTAGGAAGCAGGTATCTTGGTTTGC
257 ATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCTACGAAACAGGTATCTTGGTTGGC
* *** *
121548 CTTTAACCAATTGGATACTCTGCATTTTCAGACTTTACATAAAATACTTGAAACAAA
322 CTCTAACCAATTGGATACTCTGCATTTTCAGAAAATACACAAAATACTTGAAACAAA
* * * * *
121605 AGAAAATCAAAGAAAATAGTGTATATCGAATGTGAGGTTGAAAACAGGGAGCAAAGCCTATAAGA
1 AGAAGATCAAAGAAAATAGT-TATATCGAAAGTGAGGTTGAAAACAGGGAGCGAAGCCTTTAAGG
* * * *
121670 GAAATACAAATGATTGTATAAACACCCCCAAAAC-CATTTTATGTTTT-TTTCCCACCCCTTTTT
65 GAAATACACATGATTGTATAAGCA-CCCC-AAACTCTTTTTATGTTTTGTTTCCC-CCCTTTTTT
* * * * * *
121733 GACTCTA-C-TCGTA-TAGGAAGCTTCAATTCCGGTGAAAGTTT-ACAATGCAAAACAAGTGGTA
127 CACTC-AGCATCGTATTTGAAAG-TTGAATTACGGTGAAA-TTTGACAATGCAAAACAAGTGATA
* * *** *
121794 TATAATGTTAAAAAATAAAAGAAAAAAAAACTACTGTTTTTTAAGATATTTAAGCGAAATTTTCG
189 AATAATGTTAAAAAATAAAAG--AAAAACAC-A-TGTTTTTGGTGATATTTAAGCGAACTTTTC-
* * *
121859 A-TGAAAGATTAGAGTCATAATTACAATGG-AACAATAGACAAATATGGTA-GTAAACATGTATC
249 ATTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCTACG-AAACAGGTATC
* * * **
121921 ATGGTTCGCATCTAAGAAATTGGATAC
313 TTGGTTGGCCTCTAACCAATTGGATAC
121948 ACTTTATTTC
Statistics
Matches: 612, Mismatches: 90, Indels: 38
0.83 0.12 0.05
Matches are distributed among these distances:
378 81 0.13
379 100 0.16
380 311 0.51
381 16 0.03
382 51 0.08
383 52 0.08
384 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (378 bp):
AGAAGATCAAAGAAAATAGTTATATCGAAAGTGAGGTTGAAAACAGGGAGCGAAGCCTTTAAGGG
AAATACACATGATTGTATAAGCACCCCAAACTCTTTTTATGTTTTGTTTCCCCCCTTTTTTCACT
CAGCATCGTATTTGAAAGTTGAATTACGGTGAAATTTGACAATGCAAAACAAGTGATAAATAATG
TTAAAAAATAAAAGAAAAACACATGTTTTTGGTGATATTTAAGCGAACTTTTCATTGAAAGATTA
GAGTCATAATTACAATGGAAACAACAGACAAATATGCTACGAAACAGGTATCTTGGTTGGCCTCT
AACCAATTGGATACTCTGCATTTTCAGAAAATACACAAAATACTTGAAACAAA
Found at i:122857 original size:378 final size:378
Alignment explanation
Indices: 122153--122859 Score: 833
Period size: 378 Copynumber: 1.9 Consensus size: 378
122143 TAAACTTGGC
* *
122153 ACAAAAGAAGATCAAAGAATAGGGTTTATATCAAAAAGGAGGATGAAAACAAGGAATGAAGCTTT
1 ACAAAAGAAGATCAAAGAAAAGAGTTTATATCAAAAAGGAGGATGAAAACAAGGAATGAAGCTTT
* * * * *
122218 TAAGGAAAATAAACACGATTGTATAAGTATCCCTAAACACTTTTTATGTTTTGTTTCCCCACCAT
66 GAAGGAAAACAAACACGATTGTATAAGTAACCCGAAACACTTTTTATGTTTTGTTTCCACACCAT
* * * * *
122283 TATTCACTCGATGCGTATTTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGTGATA
131 TATTCACTCGATGCATATTAGAAACTTGAATTATGGTGAAAGTTGACAATGCAAAACAAGAGATA
* * * **
122348 AATAATGTTAAAAAAATAGCAAAGAAATACATTTTTTGTGATATTTAAGCGAACATTCCAATGAA
196 AATAATGGTAAAAAAATA-CAAACAAAAACATTTTTTGAAATATTTAAGCGAACATTCCAATGAA
* * ** * **
122413 AGATTAGAGTCGTAATTACGATGGAAACAACCGACAAAGATGGTAGGAAGCAGTTATCTTGGTTG
260 AGATTAGAGTCATAATTACAATGGAAACAACAAACAAAGATGGAAGGAAGCAGTTATCACGGTTG
122478 GCCTCTAACCAATTGGATTCTCTGCAATTTTAGACGTGACACAAAATACTTGAA
325 GCCTCTAACCAATTGGATTCTCTGCAATTTTAGACGTGACACAAAATACTTGAA
* * *
122532 ACAAAAGAAGATCAAAGAAAATAGTTTATAT-AAAAAGTGAGGATGAGAACAGGGAGA-GAAGCC
1 ACAAAAGAAGATCAAAGAAAAGAGTTTATATCAAAAAG-GAGGATGAAAACAAGGA-ATGAAG-C
* * ** *
122595 TTTGAAGG-AAACAGACATGATTGTATAAG-AACCCGAAATTCTTTTTAT-TTTTTTCTTCCAC-
63 TTTGAAGGAAAACAAACACGATTGTATAAGTAACCCGAAACACTTTTTATGTTTTGT-TTCCACA
* * * **
122656 CCTTTATTCACTCGTTGCATA-TAGCAATCTTGAATTATGGTGAAAGTTGACAATGTTAAACAAG
127 CCATTATTCACTCGATGCATATTAG-AAACTTGAATTATGGTGAAAGTTGACAATGCAAAACAAG
* * * *
122720 AGGTATATAATGGT-AAAAAATA-AAACAAAAACCAATGTTTTTGAAAATATTTAATCGAACTTT
191 AGATAAATAATGGTAAAAAAATACAAACAAAAA-C-AT-TTTTTG-AAATATTTAAGCGAACATT
* * *
122783 CCAATGAAAGATTAGAGTCATTATTACAATGGAAACAACAAACATATATGGCAAGG-AGCAAG-T
252 CCAATGAAAGATTAGAGTCATAATTACAATGGAAACAACAAACAAAGATGG-AAGGAAGC-AGTT
122846 ATCACGGTTGGCCT
315 ATCACGGTTGGCCT
122860 TTGACTAATT
Statistics
Matches: 273, Mismatches: 44, Indels: 23
0.80 0.13 0.07
Matches are distributed among these distances:
374 7 0.03
375 1 0.00
376 12 0.04
377 73 0.27
378 101 0.37
379 70 0.26
380 9 0.03
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.28
Consensus pattern (378 bp):
ACAAAAGAAGATCAAAGAAAAGAGTTTATATCAAAAAGGAGGATGAAAACAAGGAATGAAGCTTT
GAAGGAAAACAAACACGATTGTATAAGTAACCCGAAACACTTTTTATGTTTTGTTTCCACACCAT
TATTCACTCGATGCATATTAGAAACTTGAATTATGGTGAAAGTTGACAATGCAAAACAAGAGATA
AATAATGGTAAAAAAATACAAACAAAAACATTTTTTGAAATATTTAAGCGAACATTCCAATGAAA
GATTAGAGTCATAATTACAATGGAAACAACAAACAAAGATGGAAGGAAGCAGTTATCACGGTTGG
CCTCTAACCAATTGGATTCTCTGCAATTTTAGACGTGACACAAAATACTTGAA
Found at i:124204 original size:60 final size:60
Alignment explanation
Indices: 124131--124250 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
124121 ATTGTATTGG
124131 TTAGCCTCTAACCAATTGGATATTCTGCATTTTCAGACATGACACAAAATACTTGAAACA
1 TTAGCCTCTAACCAATTGGATATTCTGCATTTTCAGACATGACACAAAATACTTGAAACA
124191 TTAGCCTCTAACCAATTGGATATTCTGCATTTTCAGACATGACACAAAATACTTGAAACA
1 TTAGCCTCTAACCAATTGGATATTCTGCATTTTCAGACATGACACAAAATACTTGAAACA
124251 AAAGAATATC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.30
Consensus pattern (60 bp):
TTAGCCTCTAACCAATTGGATATTCTGCATTTTCAGACATGACACAAAATACTTGAAACA
Done.