Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012346.1 Kokia drynarioides strain JFW-HI SEQ_127348, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2745
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29


Found at i:2174 original size:13 final size:13

Alignment explanation


    Indices: 2156--2185  Score: 60
    Period size: 13  Copynumber: 2.3  Consensus size: 13

       2146 GCTCATAATG

                         
       2156 GAGTTAAGCTTAA
          1 GAGTTAAGCTTAA

                         
       2169 GAGTTAAGCTTAA
          1 GAGTTAAGCTTAA

                
       2182 GAGT
          1 GAGT

       2186 CTCTTCTTCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30


Consensus pattern (13 bp):   
GAGTTAAGCTTAA
Done.