Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012351.1 Kokia drynarioides strain JFW-HI SEQ_127353, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5783
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:1918 original size:29 final size:28
Alignment explanation
Indices: 1872--2201 Score: 249
Period size: 30 Copynumber: 11.2 Consensus size: 28
1862 ATGCACGGGG
* *
1872 GGTAAAAATGGTAGTTTTGGAAGGTTCGA
1 GGTAAAAATGGGATTTTTGGAA-GTTCGA
*
1901 AGTCAAAAATGGGATTTTTGGAAGTTCGA
1 GGT-AAAAATGGGATTTTTGGAAGTTCGA
* * *
1930 GGGT-AAAATGGTAATTTTCGAAAGGTTCGA
1 -GGTAAAAATGG-GATTTTTGGAA-GTTCGA
1960 GGTCAAAAATGGGATTTTTGGAAGTTCGA
1 GGT-AAAAATGGGATTTTTGGAAGTTCGA
* * * *
1989 GGGT-AAAATGGAAATTTTTTGAACGTTTGG
1 -GGTAAAAATGG-GATTTTTGGAA-GTTCGA
2019 GGTTAAAAATGGGATTTTTGGAAGTTCG-
1 GG-TAAAAATGGGATTTTTGGAAGTTCGA
* *
2047 GGTAAAAATTGAGATTTTTGGAAGTTCGGG
1 GGTAAAAA-TGGGATTTTTGGAAGTTC-GA
*
2077 GGT-AAAATGGTAATTTTTGGAAGGTTCGA
1 GGTAAAAATGG-GATTTTTGGAA-GTTCGA
* *
2106 GGTCAAAAATGGGATTTTTGGGAGTTCGGG
1 GGT-AAAAATGGGATTTTTGGAAGTTC-GA
* *
2136 GGT-AAAATGGTAATTTTTAGAAGGTTCG-
1 GGTAAAAATGG-GATTTTTGGAA-GTTCGA
** *
2164 GGATCAAAAATAAGATTTTTGGAAGTTCGG
1 GG-T-AAAAATGGGATTTTTGGAAGTTCGA
2194 GGATAAAA
1 GG-TAAAA
2202 TGGTAATTTT
Statistics
Matches: 245, Mismatches: 31, Indels: 50
0.75 0.10 0.15
Matches are distributed among these distances:
27 6 0.02
28 44 0.18
29 82 0.33
30 87 0.36
31 26 0.11
ACGTcount: A:0.32, C:0.05, G:0.31, T:0.32
Consensus pattern (28 bp):
GGTAAAAATGGGATTTTTGGAAGTTCGA
Found at i:1936 original size:59 final size:58
Alignment explanation
Indices: 1871--2053 Score: 244
Period size: 59 Copynumber: 3.1 Consensus size: 58
1861 GATGCACGGG
* *
1871 GGGTAAAAATGGTAGTTTTGGAAGGTTCGAAGTCAAAAATGGGATTTTTGGAAGTTCGA
1 GGGT-AAAATGGTAATTTTGGAAGGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCGA
*
1930 GGGTAAAATGGTAATTTTCGAAAGGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCGA
1 GGGTAAAATGGTAATTTT-GGAAGGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCGA
* * * * * *
1989 GGGTAAAATGGAAATTTTTTGAACGTTTGGGGTTAAAAATGGGATTTTTGGAAGTTC--
1 GGGTAAAATGGTAA-TTTTGGAAGGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCGA
2046 GGGTAAAA
1 GGGTAAAA
2054 ATTGAGATTT
Statistics
Matches: 112, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
57 8 0.07
58 13 0.12
59 87 0.78
60 4 0.04
ACGTcount: A:0.32, C:0.05, G:0.31, T:0.32
Consensus pattern (58 bp):
GGGTAAAATGGTAATTTTGGAAGGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCGA
Found at i:2072 original size:87 final size:87
Alignment explanation
Indices: 1906--2135 Score: 263
Period size: 87 Copynumber: 2.6 Consensus size: 87
1896 TTCGAAGTCA
* * * *
1906 AAAATGG-GATTTTTGGAA-GTTCGAGGGT--AAAATGGTAATTTTCGAAAGGTTCGAGGTCAAA
1 AAAATGGAAATTTTTGGAACGTTCGA-GGTCAAAAATGG-GATTTTTGGAA-GTTCG-GGTCAAA
*
1967 AATGGGATTTTTGGAAGTTCGAGGGT
62 AATGAGATTTTTGGAAGTTCGAGGGT
* * * *
1993 AAAATGGAAATTTTTTGAACGTTTGGGGTTAAAAATGGGATTTTTGGAAGTTCGGGT-AAAAATT
1 AAAATGGAAATTTTTGGAACGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCGGGTCAAAAA-T
*
2057 GAGATTTTTGGAAGTTCGGGGGT
65 GAGATTTTTGGAAGTTCGAGGGT
* * *
2080 AAAATGGTAATTTTTGGAAGGTTCGAGGTCAAAAATGGGATTTTTGGGAGTTCGGG
1 AAAATGGAAATTTTTGGAACGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCGGG
2136 GGTAAAATGG
Statistics
Matches: 122, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
86 5 0.04
87 81 0.66
88 17 0.14
89 12 0.10
90 7 0.06
ACGTcount: A:0.30, C:0.05, G:0.32, T:0.33
Consensus pattern (87 bp):
AAAATGGAAATTTTTGGAACGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCGGGTCAAAAATG
AGATTTTTGGAAGTTCGAGGGT
Found at i:2080 original size:146 final size:146
Alignment explanation
Indices: 1869--2225 Score: 457
Period size: 146 Copynumber: 2.4 Consensus size: 146
1859 CGGATGCACG
* * * * * *
1869 GGGGGTAAAAATGGTAGTTTTGGAAGGTTCGAAGTCAAAAA-TGGGATTTTTGGAAGTTCGAGGG
1 GGGGTTAAAAATGGGATTTTTGGAA-GTTCG-GGT-AAAAATTGAGATTTTTGGAAGTTCGGGGG
1933 TAAAATGGTAATTTTCGAAAGGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAAT
63 TAAAATGGTAATTTTCGAAAGGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAAT
* *
1998 GGAAATTTTTTGAACGTTT
128 GGAAATTTTTAGAACGTTC
2017 GGGGTTAAAAATGGGATTTTTGGAAGTTCGGGTAAAAATTGAGATTTTTGGAAGTTCGGGGGTAA
1 GGGGTTAAAAATGGGATTTTTGGAAGTTCGGGTAAAAATTGAGATTTTTGGAAGTTCGGGGGTAA
* * * * *
2082 AATGGTAATTTTTGGAAGGTTCGAGGTCAAAAATGGGATTTTTGGGAGTTCGGGGGTAAAATGGT
66 AATGGTAATTTTCGAAAGGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGA
*
2147 AATTTTTAGAAGGTTC
131 AATTTTTAGAACGTTC
* * ** * * *
2163 GGGATCAAAAATAAGATTTTTGGAAGTTCGGGGATAAAATGGTA-ATTTTTAGAAGGTTCGGGG
1 GGGGTTAAAAATGGGATTTTTGGAAGTTCGGGTA-AAAATTG-AGATTTTTGGAA-GTTCGGGG
2226 ACCTCTAGGG
Statistics
Matches: 184, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
145 5 0.03
146 128 0.70
147 20 0.11
148 31 0.17
ACGTcount: A:0.31, C:0.05, G:0.32, T:0.32
Consensus pattern (146 bp):
GGGGTTAAAAATGGGATTTTTGGAAGTTCGGGTAAAAATTGAGATTTTTGGAAGTTCGGGGGTAA
AATGGTAATTTTCGAAAGGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAATGGA
AATTTTTAGAACGTTC
Found at i:2134 original size:59 final size:57
Alignment explanation
Indices: 1965--2224 Score: 287
Period size: 59 Copynumber: 4.5 Consensus size: 57
1955 TTCGAGGTCA
* * * * *
1965 AAAATGG-GATTTTTGGAA-GTTCGAGGGT-AAAATGGAAATTTTTTGAACGTTTGGGGTT
1 AAAATGGTAATTTTTGGAAGGTTC--GGGTAAAAAT-GAGATTTTTGGAA-GTTCGGGGGT
*
2023 AAAAATGG-GATTTTTGGAA-GTTCGGGTAAAAATTGAGATTTTTGGAAGTTCGGGGGT
1 -AAAATGGTAATTTTTGGAAGGTTCGGGTAAAAA-TGAGATTTTTGGAAGTTCGGGGGT
* *
2080 AAAATGGTAATTTTTGGAAGGTTCGAGGTCAAAAATGGGATTTTTGGGAGTTCGGGGGT
1 AAAATGGTAATTTTTGGAAGGTTCG-GGT-AAAAATGAGATTTTTGGAAGTTCGGGGGT
* * *
2139 AAAATGGTAATTTTTAGAAGGTTCGGGATCAAAAATAAGATTTTTGGAAGTTCGGGGAT
1 AAAATGGTAATTTTTGGAAGGTTCGGG-T-AAAAATGAGATTTTTGGAAGTTCGGGGGT
*
2198 AAAATGGTAATTTTTAGAAGGTTCGGG
1 AAAATGGTAATTTTTGGAAGGTTCGGG
2225 GACCTCTAGG
Statistics
Matches: 182, Mismatches: 12, Indels: 14
0.88 0.06 0.07
Matches are distributed among these distances:
56 7 0.04
57 22 0.12
58 22 0.12
59 126 0.69
60 5 0.03
ACGTcount: A:0.31, C:0.04, G:0.32, T:0.33
Consensus pattern (57 bp):
AAAATGGTAATTTTTGGAAGGTTCGGGTAAAAATGAGATTTTTGGAAGTTCGGGGGT
Found at i:4023 original size:18 final size:17
Alignment explanation
Indices: 4000--4073 Score: 80
Period size: 18 Copynumber: 4.4 Consensus size: 17
3990 ATTTTGCAAT
4000 TTTAAATTTGAAAATAAA
1 TTTAAATTT-AAAATAAA
*
4018 TTTAAACTTAAAATAAA
1 TTTAAATTTAAAATAAA
* *
4035 TTTAAATTTTTAAACAAA
1 TTTAAA-TTTAAAATAAA
*
4053 TTTAAA--AAAAATAAA
1 TTTAAATTTAAAATAAA
4068 TTTAAA
1 TTTAAA
4074 GGGAGTTCGA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
15 12 0.25
17 14 0.29
18 22 0.46
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:4054 original size:35 final size:33
Alignment explanation
Indices: 4000--4073 Score: 94
Period size: 35 Copynumber: 2.2 Consensus size: 33
3990 ATTTTGCAAT
* *
4000 TTTAAATTTGAAAATAAATTTAAACTTAAAATAAA
1 TTTAAATTTGAAAACAAATTTAAA--AAAAATAAA
**
4035 TTTAAATTTTTAAACAAATTTAAAAAAAATAAA
1 TTTAAATTTGAAAACAAATTTAAAAAAAATAAA
4068 TTTAAA
1 TTTAAA
4074 GGGAGTTCGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 14 0.40
35 21 0.60
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (33 bp):
TTTAAATTTGAAAACAAATTTAAAAAAAATAAA
Found at i:4610 original size:99 final size:99
Alignment explanation
Indices: 4230--5782 Score: 1679
Period size: 99 Copynumber: 15.7 Consensus size: 99
4220 CAGTGCCACG
**
4230 AAGCATG-AAGGGAAAGATTTAAGCCGCAACGGCGAAT-TCAGTACCACGAAGATATGGAGGGAA
1 AAGCATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCT-AGTACCACGAAGATATAAAGGGAA
* * *
4293 AGGTTTAAGTCGCAATGGCGAACCTTGTACCTTAG
65 AGGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
* * *
4328 AAGCATGAAAGGGAAAGATTTAAGCTGCAACGGCGAATCTAGTACCACAAAGATATGAAGGGAAA
1 AAGCATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAAAGGGAAA
* * *
4393 GGTTTAAGT-ACAATGGCGAACCTTATGCCTCCGA
66 GGTTTAAGTCGCAATGGCGAACCTTATACCT-CAA
* * * * * *
4427 GAG-TTG-AAGGGAAAGATTTAAGCCACAACGGCGAATCTCGTACCACGAAGACACAAGAGGGAA
1 AAGCATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAA-AGGGAA
* *
4490 ATGTTTAAGTCGCAACGGCGAACCTTATACCTCAA
65 AGGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
* *
4525 AAGCATGAAAGGGAAAGATTTAAGTCGCAACGGTGAATCTAGTACCACGAAGATATAAAGGGAAA
1 AAGCATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAAAGGGAAA
*
4590 GGTTTAAGTCGCAATGGCGAACCTTATACCT-TA
66 GGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
* * * * * * *
4623 GAGACATG-TAGGGAAAGATTTAAACCACAACGGCGAATCCAGTACCACGAAGACACAAGAGGGA
1 AAG-CATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAA-AGGGA
* * *
4687 AAGGTTTAAGTCGCAA-GAGCGAACATTGTACCTCAG
64 AAGGTTTAAGTCGCAATG-GCGAACCTTATACCTCAA
** * * * * *
4723 AAGCATGAAAGGGAAAGATTTAAGTTGTAACGGCGATTCTAGTACCCCAAAGATATGAAGGGAAA
1 AAGCATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAAAGGGAAA
* * *
4788 TGTTTAAATTGCAATGGCGAACCTTATACCTC-A
66 GGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
* * * * * * * *
4821 GAGACATG-AAGGGAAAGATTTAAGCCACAACGGCAAATCCAGTACCACAAAGACACAAGAGAGA
1 AAG-CATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAA-AGGGA
* * * *
4885 AAGGTTTAAGTCGCAACGGTGAACCTTGTACCTCAG
64 AAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
* * * *
4921 AAGCATGAAAGGGAAAGATTTAAGCCGCAGCGACGAATCTAGTACTACGAAGATATGAAGGGAAA
1 AAGCATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAAAGGGAAA
4986 GGTTTAAGTCGCAATGGCGAACCTTATACCTC-A
66 GGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
* ** * * * * * *
5019 AAGACATGAAA-GGAAAGATTTAAGCCACAATAGTGAATCCAGTACCAAGAAGACACAAGAGGAA
1 AAG-CATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAA-AGGGA
* * * * * * *
5083 AAGATTTAAATCGCAACGACGAACCTTGTACCACAG
64 AAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
* * * *
5119 AAGCATGAAAGGGAAAGATTTAAGTCGTAACGCCGAATCTAGTACCACGAAGATATGAAGGGAAA
1 AAGCATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAAAGGGAAA
** *
5184 GGTTTAAGTCATAATGGCGAACCTTATACCT-TA
66 GGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
* * * * * * **
5217 GAGACATG-AAGGGATAGATTTAAGCCACAATGGCGAATCCAGTACCACAAAGATATGGAGGGAA
1 AAG-CATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAAAGGGAA
* * *
5281 AGGTTTAAGTCGCAATGACGAACCTTGTACCTCAG
65 AGGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
* * *
5316 AAGCATGAAAGGGAAAGATTTAAGCTGCAACGGCGAATCTAGTACCACAAAGATATGAAGGGAAA
1 AAGCATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAAAGGGAAA
* * * *
5381 TGTTTAAGT-ACAATGGCGAACCTTATGCCTC-T
66 GGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
* * * * *
5413 GAGACTTG-AAGGGAAAGATTTAAGCCACAACGGCGAATCTAGTACCACGAAGACACAAGAGGGA
1 AAG-CATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAA-AGGGA
* * * *
5477 AAGGTTTAAGTCGCAACGGCAAACCTTGTACCTGAA
64 AAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
* * *
5513 AAGCATGAAAGGGAAAGATTTAAGTCGCAACGGTGAATCTAGTACCACGAAGATATAAAGCGAAA
1 AAGCATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAAAGGGAAA
5578 GGTTTAAGTCGCAATGGCGAACCTTATACCTC-A
66 GGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
* * * * * *
5611 GAGACATG-AAGGGAAAGATTTAAACCACAACGGCGAATCCAGTACCACGAAGACACAAGAGGGA
1 AAG-CATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAA-AGGGA
* *
5675 AAGGTTTAAGTCGCAA-GAGCGAACCTTGTACCTCAG
64 AAGGTTTAAGTCGCAATG-GCGAACCTTATACCTCAA
** * * * * *
5711 AAGCATGAAAGGGAAAGATTTAAGTTGTAACGGCGATTCTAGTACCCCAAAGATATGAAGGGAAA
1 AAGCATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAAAGGGAAA
*
5776 TGTTTAA
66 GGTTTAA
5783 A
Statistics
Matches: 1193, Mismatches: 228, Indels: 67
0.80 0.15 0.05
Matches are distributed among these distances:
97 89 0.07
98 335 0.28
99 517 0.43
100 252 0.21
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.19
Consensus pattern (99 bp):
AAGCATGAAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACGAAGATATAAAGGGAAA
GGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
Found at i:4701 original size:198 final size:198
Alignment explanation
Indices: 4233--5782 Score: 2254
Period size: 198 Copynumber: 7.8 Consensus size: 198
4223 TGCCACGAAG
* * * **
4233 CATGAAGGGAAAGATTTAAGCCGCAACGGCGAATTCAGTACCACGAAGATA-TGGAGGGAAAGGT
1 CATGAAGGGAAAGATTTAAGCCACAACGGCGAATCCAGTACCACGAAGACACAAGAGGGAAAGGT
* *
4297 TTAAGTCGCAATGGCGAACCTTGTACCTTAGAAGCATGAAAGGGAAAGATTTAAG-CTGCAACGG
66 TTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGAAAGGGAAAGATTTAAGTC-GCAACGG
* * *
4361 CGAATCTAGTACCACAAAGATATGAAGGGAAAGGTTTAAGT-ACAATGGCGAACCTTATGCCTCC
130 CGAATCTAGTACCACAAAGATATGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCA
4425 GAGA
195 GAGA
** *
4429 GTTGAAGGGAAAGATTTAAGCCACAACGGCGAATCTC-GTACCACGAAGACACAAGAGGGAAATG
1 CATGAAGGGAAAGATTTAAGCCACAACGGCGAATC-CAGTACCACGAAGACACAAGAGGGAAAGG
* *
4493 TTTAAGTCGCAACGGCGAACCTTATACCTCAAAAGCATGAAAGGGAAAGATTTAAGTCGCAACGG
65 TTTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGAAAGGGAAAGATTTAAGTCGCAACGG
* * * *
4558 TGAATCTAGTACCACGAAGATATAAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTTA
130 CGAATCTAGTACCACAAAGATATGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCA
4623 GAGA
195 GAGA
* *
4627 CATGTAGGGAAAGATTTAAACCACAACGGCGAATCCAGTACCACGAAGACACAAGAGGGAAAGGT
1 CATGAAGGGAAAGATTTAAGCCACAACGGCGAATCCAGTACCACGAAGACACAAGAGGGAAAGGT
* * *
4692 TTAAGTCGCAA-GAGCGAACATTGTACCTCAGAAGCATGAAAGGGAAAGATTTAAGTTGTAACGG
66 TTAAGTCGCAACG-GCGAACCTTGTACCTCAGAAGCATGAAAGGGAAAGATTTAAGTCGCAACGG
* * * * *
4756 CGATTCTAGTACCCCAAAGATATGAAGGGAAATGTTTAAATTGCAATGGCGAACCTTATACCTCA
130 CGAATCTAGTACCACAAAGATATGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCA
4821 GAGA
195 GAGA
* * *
4825 CATGAAGGGAAAGATTTAAGCCACAACGGCAAATCCAGTACCACAAAGACACAAGAGAGAAAGGT
1 CATGAAGGGAAAGATTTAAGCCACAACGGCGAATCCAGTACCACGAAGACACAAGAGGGAAAGGT
* * * *
4890 TTAAGTCGCAACGGTGAACCTTGTACCTCAGAAGCATGAAAGGGAAAGATTTAAGCCGCAGCGAC
66 TTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGAAAGGGAAAGATTTAAGTCGCAACGGC
* * *
4955 GAATCTAGTACTACGAAGATATGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAA
131 GAATCTAGTACCACAAAGATATGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAG
5020 AGA
196 AGA
* ** * * * *
5023 CATGAAAGGAAAGATTTAAGCCACAATAGTGAATCCAGTACCAAGAAGACACAAGAGGAAAAGAT
1 CATGAAGGGAAAGATTTAAGCCACAACGGCGAATCCAGTACCACGAAGACACAAGAGGGAAAGGT
* * * * *
5088 TTAAATCGCAACGACGAACCTTGTACCACAGAAGCATGAAAGGGAAAGATTTAAGTCGTAACGCC
66 TTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGAAAGGGAAAGATTTAAGTCGCAACGGC
* ** *
5153 GAATCTAGTACCACGAAGATATGAAGGGAAAGGTTTAAGTCATAATGGCGAACCTTATACCTTAG
131 GAATCTAGTACCACAAAGATATGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAG
5218 AGA
196 AGA
* * * * **
5221 CATGAAGGGATAGATTTAAGCCACAATGGCGAATCCAGTACCACAAAGATA-TGGAGGGAAAGGT
1 CATGAAGGGAAAGATTTAAGCCACAACGGCGAATCCAGTACCACGAAGACACAAGAGGGAAAGGT
* *
5285 TTAAGTCGCAATGACGAACCTTGTACCTCAGAAGCATGAAAGGGAAAGATTTAAG-CTGCAACGG
66 TTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGAAAGGGAAAGATTTAAGTC-GCAACGG
* * * *
5349 CGAATCTAGTACCACAAAGATATGAAGGGAAATGTTTAAGT-ACAATGGCGAACCTTATGCCTCT
130 CGAATCTAGTACCACAAAGATATGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCA
5413 GAGA
195 GAGA
* *
5417 CTTGAAGGGAAAGATTTAAGCCACAACGGCGAATCTAGTACCACGAAGACACAAGAGGGAAAGGT
1 CATGAAGGGAAAGATTTAAGCCACAACGGCGAATCCAGTACCACGAAGACACAAGAGGGAAAGGT
* * * *
5482 TTAAGTCGCAACGGCAAACCTTGTACCTGAAAAGCATGAAAGGGAAAGATTTAAGTCGCAACGGT
66 TTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGAAAGGGAAAGATTTAAGTCGCAACGGC
* * *
5547 GAATCTAGTACCACGAAGATATAAAGCGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAG
131 GAATCTAGTACCACAAAGATATGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAG
5612 AGA
196 AGA
*
5615 CATGAAGGGAAAGATTTAAACCACAACGGCGAATCCAGTACCACGAAGACACAAGAGGGAAAGGT
1 CATGAAGGGAAAGATTTAAGCCACAACGGCGAATCCAGTACCACGAAGACACAAGAGGGAAAGGT
* *
5680 TTAAGTCGCAA-GAGCGAACCTTGTACCTCAGAAGCATGAAAGGGAAAGATTTAAGTTGTAACGG
66 TTAAGTCGCAACG-GCGAACCTTGTACCTCAGAAGCATGAAAGGGAAAGATTTAAGTCGCAACGG
* * *
5744 CGATTCTAGTACCCCAAAGATATGAAGGGAAATGTTTAA
130 CGAATCTAGTACCACAAAGATATGAAGGGAAAGGTTTAA
5783 A
Statistics
Matches: 1203, Mismatches: 139, Indels: 22
0.88 0.10 0.02
Matches are distributed among these distances:
196 113 0.09
197 319 0.27
198 770 0.64
199 1 0.00
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.19
Consensus pattern (198 bp):
CATGAAGGGAAAGATTTAAGCCACAACGGCGAATCCAGTACCACGAAGACACAAGAGGGAAAGGT
TTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGAAAGGGAAAGATTTAAGTCGCAACGGC
GAATCTAGTACCACAAAGATATGAAGGGAAAGGTTTAAGTCGCAATGGCGAACCTTATACCTCAG
AGA
Done.