genome.fa.s12354.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012354.1 Kokia drynarioides strain JFW-HI SEQ_127356, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155757

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3082--3151	35	2.0	35	94	0	122	52	10	10	27	1.66
3165--3208	18	2.4	18	81	7	54	68	11	6	13	1.39
4917--4951	12	2.9	12	86	0	52	31	8	2	57	1.44
5375--5742	149	2.4	151	86	7	505	41	3	13	42	1.61
5375--5778	150	2.7	146	81	11	414	42	3	12	41	1.60
6113--6148	17	2.1	17	89	0	54	52	0	27	19	1.46
13333--13371	19	2.2	18	86	9	53	41	5	5	48	1.47
40706--40730	13	1.9	13	100	0	50	24	12	8	56	1.62
46571--46614	17	2.6	17	78	10	54	68	0	31	0	0.90
54649--54689	5	7.8	5	84	10	55	19	0	2	78	0.87
54647--54689	11	4.0	11	87	6	61	20	0	2	76	0.89
55029--55053	12	2.1	12	100	0	50	24	24	8	44	1.80
60814--61022	100	2.1	101	94	2	368	41	13	9	35	1.77
64879--64968	28	3.2	27	77	12	83	52	25	0	22	1.47
64862--64956	35	2.7	35	86	6	120	51	27	0	21	1.48
64896--64968	21	3.5	21	78	17	71	53	24	0	21	1.46
64909--64989	21	3.9	20	79	7	81	51	19	2	25	1.59
64903--65021	14	8.5	14	66	7	71	49	22	1	26	1.59
65437--65476	18	2.2	18	90	0	62	0	37	17	45	1.49
65437--65467	6	5.2	6	100	0	62	0	35	16	48	1.46
65943--66038	43	2.2	43	88	3	140	47	14	8	29	1.73
67261--67306	21	2.2	21	96	0	83	54	13	0	32	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70975--71350	185	2.0	185	98	0	734	30	13	22	34	1.92
73375--73427	27	1.9	28	84	3	72	69	5	0	24	1.09
73661--73725	27	2.5	26	81	15	82	0	29	1	69	0.98
73673--73725	20	2.7	20	78	0	61	0	26	1	71	0.96
73776--73821	23	2.0	23	100	0	92	26	26	8	39	1.85
81126--81254	40	3.2	40	84	1	170	31	20	32	15	1.94
81107--81254	20	7.4	20	80	3	147	31	19	32	16	1.94
82096--82174	39	2.0	39	100	0	158	30	26	0	43	1.55
83606--83653	21	2.3	20	75	10	51	22	14	22	39	1.91
86122--86197	41	1.9	38	84	10	100	65	2	1	30	1.14
86148--86206	32	1.9	30	83	13	75	67	1	0	30	1.00
86509--86550	9	4.9	9	77	11	52	59	0	0	40	0.97
86510--86560	25	2.0	25	100	0	102	64	0	0	35	0.94
87629--87680	26	2.0	26	85	7	70	73	1	13	11	1.19
91947--92041	45	2.1	46	90	2	147	27	14	25	32	1.95
101186--101235	24	2.0	25	88	3	75	54	14	6	26	1.63
105074--105104	15	2.0	16	93	6	55	70	0	0	29	0.87
105464--105521	23	2.6	22	76	12	57	51	1	8	37	1.43
105480--105525	23	2.0	23	91	0	74	47	0	10	41	1.38
110505--110534	6	4.8	6	95	4	51	0	16	0	83	0.65
118687--118794	56	1.9	56	84	0	144	37	22	16	24	1.94
142090--142276	52	3.6	52	86	4	245	26	14	26	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142090--142276	102	1.8	104	83	4	254	26	14	26	31	1.95
148439--149105	162	4.2	158	77	7	561	35	18	14	31	1.91
148439--149105	320	2.1	312	80	6	720	35	18	14	31	1.91
148685--149105	161	2.6	160	76	8	410	34	18	15	31	1.92
150764--150846	37	2.2	38	78	20	95	59	4	1	34	1.27
151160--151250	10	9.4	9	74	20	69	38	3	1	57	1.23
151900--151945	14	3.3	14	90	0	74	45	4	15	34	1.66

Tables:   1

The End!