Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012356.1 Kokia drynarioides strain JFW-HI SEQ_127358, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3660
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:1893 original size:45 final size:45

Alignment explanation


    Indices: 1829--1965  Score: 193
    Period size: 45  Copynumber: 3.0  Consensus size: 45

       1819 GCATAGCTCA

                                       *                 
       1829 TCAAGCCAAGGATATCAGCCTCAGTTTAACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                    *              *                     
       1874 TCAAGCCATGGATATCAGCCTCAATTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                 **           *  *              *   *    
       1919 TCAAGAGAAGGATATCAGGCTGAGTTTGACGAGCCATCGCGATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

              
       1964 TC
          1 TC

       1966 TATTCCTCCC


Statistics
Matches: 81,  Mismatches: 11, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  45   81  1.00

ACGTcount: A:0.31, C:0.28, G:0.21, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

Found at i:2001 original size:21 final size:21

Alignment explanation


    Indices: 1960--2002  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1950 AGCCATCGCG

                    *      **    
       1960 ATACTCTATTCCTCCCGGGCA
          1 ATACTCTACTCCTCCAAGGCA

                                 
       1981 ATACTCTACTCCTCCAAGGCA
          1 ATACTCTACTCCTCCAAGGCA

             
       2002 A
          1 A

       2003 ATGGATCCTA


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.26, C:0.37, G:0.12, T:0.26


Consensus pattern (21 bp):   
ATACTCTACTCCTCCAAGGCA
Done.