Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012357.1 Kokia drynarioides strain JFW-HI SEQ_127359, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26105
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Warning! 101 characters in sequence are not A, C, G, or T
Found at i:3334 original size:50 final size:50
Alignment explanation
Indices: 3270--3462 Score: 199
Period size: 51 Copynumber: 3.8 Consensus size: 50
3260 TAAAAAAGTC
* * *
3270 ATGCATTATGTAACTTTTATGTTAGTTAAGTATGCATCATAAATACTTAA
1 ATGCATTATGTAACTTTCATGTTAGTTAAGTATGCATCATAAATAATGAA
* * * *
3320 ATGCATTATTTAACTCTCATGATTAGTTAAGTATGTATCATAAATAATGAC
1 ATGCATTATGTAACTTTCATG-TTAGTTAAGTATGCATCATAAATAATGAA
* * * * * **
3371 ATGCATTAAGTAACTTACATGTTAGTTAAATATGCATAATAAATCATGTC
1 ATGCATTATGTAACTTTCATGTTAGTTAAGTATGCATCATAAATAATGAA
* *
3421 ATGCATTTATGTAAC-TCCAATGTTAGTTAAAGTTTGCATCAT
1 ATGCA-TTATGTAACTTTC-ATGTTAGTT-AAGTATGCATCAT
3463 TAAAACAAGT
Statistics
Matches: 118, Mismatches: 21, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
50 49 0.42
51 59 0.50
52 10 0.08
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (50 bp):
ATGCATTATGTAACTTTCATGTTAGTTAAGTATGCATCATAAATAATGAA
Found at i:3425 original size:101 final size:101
Alignment explanation
Indices: 3269--3450 Score: 237
Period size: 101 Copynumber: 1.8 Consensus size: 101
3259 TTAAAAAAGT
* ** * * *
3269 CATGCATTATGTAACTTTTATGTTAGTTAAGTATGCATCATAAATACTTAAATGCA-TTATTTAA
1 CATGCATTAAGTAACTTACATGTTAGTTAAATATGCATAATAAATACTTAAATGCATTTATGTAA
3333 CTCTC-ATGATTAGTTAAGTATGTATCATAAATAATGA
66 CTC-CAATG-TTAGTTAAGTATGTATCATAAATAATGA
*
3370 CATGCATTAAGTAACTTACATGTTAGTTAAATATGCATAATAAAT-CATGT-CATGCATTTATGT
1 CATGCATTAAGTAACTTACATGTTAGTTAAATATGCATAATAAATAC-T-TAAATGCATTTATGT
3433 AACTCCAATGTTAGTTAA
64 AACTCCAATGTTAGTTAA
3451 AGTTTGCATC
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
100 1 0.01
101 55 0.79
102 14 0.20
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (101 bp):
CATGCATTAAGTAACTTACATGTTAGTTAAATATGCATAATAAATACTTAAATGCATTTATGTAA
CTCCAATGTTAGTTAAGTATGTATCATAAATAATGA
Found at i:3798 original size:79 final size:78
Alignment explanation
Indices: 3691--3896 Score: 263
Period size: 79 Copynumber: 2.6 Consensus size: 78
3681 GGTGGCTTTT
* * *
3691 CAAAAACCAAGGGG-AACTCTTCAGATGTTGATCAGTTTTGAGGCACTTAAAGGCCAATTCAAGA
1 CAAAAACAAAGGGGAAACTCTTCAAATGTTGATCAGTTTTGGGGCACTTAAAGGCCAATTCAAGA
3755 CAAGGTGACTCTA
66 CAAGGTGACTCTA
* * *
3768 CAAAACACTAAGGGGAAACTCTTCAAATGTTGATCTA-TTCTGGGGCACTTAAAGGCTAATTCAA
1 CAAAA-ACAAAGGGGAAACTCTTCAAATGTTGATC-AGTTTTGGGGCACTTAAAGGCCAATTCAA
*
3832 GACAAGGTGACTCTT
64 GACAAGGTGACTCTA
* * * **
3847 TAAAAGACAAAAGGGAAACTCTTCAAATGCTGATTGGTTTTGGGGCACTT
1 CAAAA-ACAAAGGGGAAACTCTTCAAATGTTGATCAGTTTTGGGGCACTT
3897 CATGGCACCA
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
77 5 0.05
78 8 0.07
79 97 0.87
80 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAAAACAAAGGGGAAACTCTTCAAATGTTGATCAGTTTTGGGGCACTTAAAGGCCAATTCAAGA
CAAGGTGACTCTA
Found at i:4047 original size:36 final size:35
Alignment explanation
Indices: 4007--4089 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 35
3997 AAGATGGAGA
* *
4007 CCTTTTAGCTA-TCCAAGAACCAATGAAAAGACATG
1 CCTTTTAGCTACTCAAAG-ACAAATGAAAAGACATG
* * *
4042 CCCTTTCATCTACTCAAAGACAAATGAAGAGACATG
1 -CCTTTTAGCTACTCAAAGACAAATGAAAAGACATG
4078 CCTTTTGAGCTA
1 CCTTTT-AGCTA
4090 ACCATCAAAG
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
35 5 0.13
36 28 0.74
37 5 0.13
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.25
Consensus pattern (35 bp):
CCTTTTAGCTACTCAAAGACAAATGAAAAGACATG
Found at i:5210 original size:216 final size:216
Alignment explanation
Indices: 4802--5694 Score: 1090
Period size: 216 Copynumber: 4.2 Consensus size: 216
4792 GACAAGTTCG
* *
4802 GAACCAAGAGAGAAACAATTCTCTCCTAAATAAG-TTTTAATTCAAAGACCAAAAGTTGTTTCCA
1 GAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * *
4866 AAATGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGAAATGTTCGAAAAATTGCTC
66 AAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTT
* *
4931 GAAAGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA
131 GAAAGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGA
* * * *
4996 CAAGTTTAGAAGCTCGGCCAA
196 CAAGTTCAGAAGTTCAGCCGA
* * * * *
5017 GAACCAATAGATAAATAATTGTCACCTAAATAATTTTTTAATTCAAAGACCAAAAGTTGTTTACA
1 GAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * ** *
5082 AAATGGA-TAACTATTTAGAGCAAATGGTGTGATTTCCTAAGCATGGAATGTTCAAAAAATTGTT
66 AAAT-GACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCT
* *
5146 TGAAAGAATGGATTGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTG
130 TGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTG
* **
5211 ACAAGTTCGGAAGTTCAATCGA
195 ACAAGTTCAGAAGTTCAGCCGA
* * *
5233 GAACCAAGACAGAAACAATTCTC-CGGCT-AGTATGTTTTTAATTCAAAGACCAAAAGTTGTTTA
1 GAACCAAGAGAGAAACAATTCTCAC--CTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * **
5296 CAAAATGACAAACTATTTAGACCAACTGATGTAATTTCCCGAGCATGGAATGTTCGGAAAATTGC
64 CAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGC
* * * * * *
5361 TTGAAGGATTGGATCATCATGAATACTTTAAGAAACCAAAGTTATAAAAGAACTCATAAAAGTTT
129 TTGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTT
5426 GACAAGTTCA-AAGTTCAGCCGA
194 GACAAGTTCAGAAGTTCAGCCGA
* * ** *
5448 GAACTAAGAGAAAAACAATTCTCATGTAAATAAG--TTT--TT--AA-ATC--AA-----TTACA
1 GAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
*
5499 AAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTTCTT
66 AAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTT
* * * * * * *
5564 GAAGGAATTGATCGT-TTGAATGCTTTAAGGAATCGAAGTTATAATAGAACTCGTAAAAGTTTAA
131 GAAAGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGA
*
5628 CAAGTTC-GAAAGTTCGGCCGA
196 CAAGTTCAG-AAGTTCAGCCGA
* *
5649 GAACCAAGAGAGAAACAATTCTCACATAAGTAAGTTTTTAATTCAA
1 GAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAA
5695 CAGTCACTAC
Statistics
Matches: 576, Mismatches: 87, Indels: 38
0.82 0.12 0.05
Matches are distributed among these distances:
200 48 0.08
201 117 0.20
203 3 0.01
205 2 0.00
206 2 0.00
207 1 0.00
208 2 0.00
209 2 0.00
211 2 0.00
213 3 0.01
214 1 0.00
215 65 0.11
216 324 0.56
217 4 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
GAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
AAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTT
GAAAGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGA
CAAGTTCAGAAGTTCAGCCGA
Found at i:5642 original size:201 final size:201
Alignment explanation
Indices: 5293--5694 Score: 583
Period size: 201 Copynumber: 2.0 Consensus size: 201
5283 CAAAAGTTGT
* **
5293 TTACAAAATGACAAACTATTTAGACCAACTGATGTAATTTCCCGAGCATGGAATGTTCGGAAAAT
1 TTACAAAATGACAAACTATTTAGACCAAATGATGTAATTTCCCGAGCATGGAATGTTCAAAAAAT
5358 TGCTTGAAGGATTGGATCATCATGAATACTTTAAGAAACCAAAGTTATAAAAGAACTCATAAAAG
66 TGCTTGAAGGATTGGATCATCATGAATACTTTAAGAAACCAAAGTTATAAAAGAACTCATAAAAG
* * **
5423 TTTGACAAGTTCAAAGTTCAGCCGAGAACTAAGAGAAAAACAATTCTCATGTAAATAAGTTTTTA
131 TTTAACAAGTTCAAAGTTCAGCCGAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTA
5488 AATCAA
196 AATCAA
*
5494 TTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAAT
1 TTACAAAATGACAAACTATTTAGACCAAATGATGTAATTTCCCGAGCATGGAATGTTCAAAAAAT
* * * * * * * * *
5559 TTCTTGAAGGAATT-GATCGT-TTGAATGCTTTAAGGAATCGAAGTTATAATAGAACTCGTAAAA
66 TGCTTGAAGG-ATTGGATCATCATGAATACTTTAAGAAACCAAAGTTATAAAAGAACTCATAAAA
* * *
5622 GTTTAACAAGTTCGAAAGTTCGGCCGAGAACCAAGAGAGAAACAATTCTCACATAAGTAAGTTTT
130 GTTTAACAAGTTC-AAAGTTCAGCCGAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTT
*
5687 TAATTCAA
194 TAAATCAA
5695 CAGTCACTAC
Statistics
Matches: 178, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
200 48 0.27
201 127 0.71
202 3 0.02
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (201 bp):
TTACAAAATGACAAACTATTTAGACCAAATGATGTAATTTCCCGAGCATGGAATGTTCAAAAAAT
TGCTTGAAGGATTGGATCATCATGAATACTTTAAGAAACCAAAGTTATAAAAGAACTCATAAAAG
TTTAACAAGTTCAAAGTTCAGCCGAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTA
AATCAA
Found at i:7666 original size:32 final size:32
Alignment explanation
Indices: 7630--7692 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
7620 GCCATCCATA
* * *
7630 CATGTACCTGAAATATATTAATCAGCTAATTG
1 CATGTACCTGAAACACATTAATCAACTAATTG
7662 CATGTACCTGAAACACATTAATCAACTAATT
1 CATGTACCTGAAACACATTAATCAACTAATT
7693 AATTTCAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (32 bp):
CATGTACCTGAAACACATTAATCAACTAATTG
Found at i:8961 original size:216 final size:216
Alignment explanation
Indices: 8329--15141 Score: 6118
Period size: 216 Copynumber: 31.3 Consensus size: 216
8319 ATCGCCTACA
** * * * * *
8329 TCTCTCTTGGTTCTTAAACGAACTTCTGAACTTTTCAAGCTTTTACAAGTTCTTTTATGACATT-
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTC
** * * * *
8393 GGTTCCTTAAAGTATTCAAGGCGATCCA-TTCTTTCAAGCAATATTCCAAACATTCCATGCTCGA
65 GGTTCCTTAAAGTATTCAAGATGATCCATTTC-TACGAGCAATTTTCCGAACATTCCATGCTCGA
* *
8457 GAAATCGCATCATTCGGTCTAAATATTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * *
8522 AACTTATTGACGTGGGATTTGTT
194 AACTTATTTATGTGAGAATTGTT
* * * * *
8545 TCTCTATTGGTTCTTGGATGAAAC-TCCTG-ACTTGTCAAACTTTTACAAGGTCTTTTAAAACTT
1 TCTCTCTTGGTTCTTGGACG-AACTTCC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * *
8608 CAGTTCCTTAAAGTGTATTAAATATAAATGATCCACTTC-ATCGAGCAA-TTTACGAACATTCCA
64 CGGTTCCTTAAA--GTATT---CA-AGATGATCCATTTCTA-CGAGCAATTTTCCGAACATTCCA
* * * *
8671 TTCTTCGA-AAATCGAATCTTTTGGTTTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
122 TGC-TCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
* * *
8735 GAGTTAAAAACTTATTTATGTGAAAATTGTC
186 GAATTAAAAACTTATTTATGTGAGAATTGTT
* * * * *
8766 TCTCCCTTGGTTCTTGGACGAACTACCGAACTTGTAAAACTTTTACGAGTTATTTTATTACTTCG
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* ** * *
8831 ATTCCTTAAAGTATTCAAGACCATCCTTTTCTACGAGCAATTTTCCAAACATTCCATGCTCGAGA
66 GTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGAGA
* * * * ** *
8896 AATTGCATCTTTTGGTCTAAATAG-TTGTCATTTTGAAAACCAAATTTTGGTCTTCAAACTAAAA
131 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAA
8960 ACTTATTTATGTGAGAATTGTT
195 ACTTATTTATGTGAGAATTGTT
* * * * * *
8982 TCTC-CTTTGGTTCTTTGACAAACTTCTGTACTAGTCAAGCTTTTTACGAGTTCTTTTATAACTT
1 TCTCTC-TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTT
* * * * * *
9046 TGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGATCAATATTCCGAACATTCCATGTTCGA
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGA
* * * *
9111 -AAATAGCATCATTCGGTCTAAATAGTTTGTCATTTTGCAAACAACTTTTTGGTCCTTGAATTAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAA
** *
9175 AAA-TATATTTATGAAAGAATTATT
193 AAACT-TATTTATGTGAGAATTGTT
* * * * ** * * *
9199 TCTCTTTTGATTCTTAGACAAACTTCTAAACTTGTCAAGCTTTTACTATTTCTTCTATGATAACT
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT-T-T-ATAACT
* * * * * * **
9264 TCGGTTCCTTAAACTATCCAAGATGATCCAATCCTTCGAGCAATATTCAAAACATTCCATGCTCT
63 TCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTC-
* * * * * **
9329 G-GAAATCGCATCATTCGGTCAAAATAGTTTGCCATTTCGTAAAAAAAACTTTTGGTCACTGAAT
127 GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAAT
* * *
9393 TAAATACTAATTTATTTGTA-AATTGTT
190 TAAAAACTTATTTATGTG-AGAATTGTT
* * * ** * * *
9420 TCTCTTTTGGTTCTTGGACGAACTTTCGAACTAGGAAAACTTTTACTA-TTTTTGTTATAACTAC
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT-TTATAACTTC
* * *
9484 GGTTCCTTAAAGTATTCAATATGATCCATTTCTTCGAGCAATTTTACGAACATTCCATGCTCGAG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGAG
* *
9549 AAATTGCATCACTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
*
9614 ACTTATTTACGTGAGAATTGTT
195 ACTTATTTATGTGAGAATTGTT
* * * * * * *
9636 TCTGTCTTGGTTCATAGG-CGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCCTTTATGACATT
1 TCTCTCTTGGTTC-TTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TT
* ** * * * ** *
9700 -GGTTCCTTAATGTATTCAAGGCGAT-CAATTCTTTCAAGCAACATTCCAAACATTCCATGCTCG
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTTC-TACGAGCAATTTTCCGAACATTCCATGCTCG
* *
9763 AGAAATCGCATCATTAGGTCTAAATATTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
128 AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
**
9828 AAACTTATTTGCGTGAGAATTGTT
193 AAACTTATTTATGTGAGAATTGTT
* * * * *
9852 TCTCTCTTAGTTCTTGGATGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTAG
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * * * * *
9917 GTTCCTTAAAGCATTCTATG-CGATCCATTCCTTCTA-CAAATTTTTCGAACATTCAATGTTCG-
66 GTTCCTTAAAGTATTC-AAGATGATCCATTTCTACGAGC-AATTTTCCGAACATTCCATGCTCGA
* * * *
9979 GAAAATCGCATCATCTGATCTAAATAGTTTGTCATTTTGTGAACAACTTTTGGTCTTTGAATAAA
129 G-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * *
10044 AAACTTATTGACGTGGGATTTGTT
193 AAACTTATTTATGTGAGAATTGTT
* * *
10068 TCTCTCTTGGTTCTTGGACGTACCTCC-AGACTTGTCAAACTTTTA-GAAGTTCTTTTAGAACTT
1 TCTCTCTTGGTTCTTGGACGAACTTCCGA-ACTTGTCAAACTTTTACG-AGTTCTTTTATAACTT
* * * * *
10131 TGGTTCCTTGAAGTGTATTATATATAAATGATCCACTTC-ATCGAGCAATTTT-CGAACATTCCA
64 CGGTTCCTT-AA-AGTA-T-T-CA-AGATGATCCATTTCTA-CGAGCAATTTTCCGAACATTCCA
* * * * * * * *
10194 TTCTTCG-GAAATTGAATCTTTTGGTTTAAATAGTTTGTGATTTTGTGAACAACTGTTGGTCTTT
122 TGC-TCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
* * * *
10258 GAGTTGAAAACTTATGTATGTGAAAATTG--
186 GAATTAAAAACTTATTTATGTGAGAATTGTT
* * * *
10287 TCTCTCTTGGTTCTTGGACGAACTACCGAACTTGTAAAACTTTTACGAGTT-ATTTATTACTTCG
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
** ** * * *
10351 GTTCCTTAAAGTATTCAAGACCATCTGTTTCCAGGAGCAATTTTCC-AGACATTCCGTGCTCGAG
66 GTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGA-ACATTCCATGCTCGAG
* * * * * ** *
10415 AAATTGCAACTTTTGGTCTAAATAGTTTGTCATTTTGAAAACCAAGTTTTGGTCTTCAAACTAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAA
*
10480 AACTTATTT-TCGTGAAAATTGTT
194 AACTTATTTAT-GTGAGAATTGTT
* * * *
10503 TCTC-CTTTGGTTCTTAGACGAACTTCTGAACTAGTCAAGCTTTTTACGAGTTCTTTTATAACTT
1 TCTCTC-TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTT
* * * * * * * *
10567 TGGTTTCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAATATTCC-AACATTCCATGCTCGG
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGA
* * * * *
10631 GAAATAGCATCATTCGGTCTAAATATTTTGTCATTTTGCAAACAACTTTTTGGTCCTTGAATTAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAA
** *
10696 AAA-TATATTTATGAAAGAATTATT
193 AAACT-TATTTATGTGAGAATTGTT
* * * * ** * * * * **
10720 TCTCTTTTGATTCTTAGACAAACTTCTAAACTTGTCAAGCTTTTACTATTTCTTATATAACTTTT
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * *
10785 GTTCCTTACACTATTCAAGATGATCCAATCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGA
66 GTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGAGA
* * * * * * * ***
10850 AATCACATCGTTCGGTCAAAATAGTTTGCCATTTCGTAAAAAAAACTTTTGGTCACCGAATTAAA
131 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAATTAAA
* *
10915 TACTTATTTATTTGTA-AATTGTT
194 AACTTATTTATGTG-AGAATTGTT
* * * * * * * * ** * *
10938 CCTCACTTTGTTCTCGGATGAACTTTCGAGCTAGGAAAACTTTTACTA-TTTTTGTTATAACTTC
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT-TTATAACTTC
* * *
11002 GATTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAGCAATTTTACGAACATTCCATGCTCGAG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGAG
* * *
11067 AAATTGCATCACTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTGAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
*
11132 ACTTATTTACGTGAGAATTGTT
195 ACTTATTTATGTGAGAATTGTT
* * * * * * *
11154 TCTCTCTTGGTTCTTAGATGAACTTCTGAAATTTTCAAGCTTTTACGAGTTCTTTTATGACATT-
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTC
* ** * * * ** *
11218 GGATCCTTAAAGTATTCAAGGCGATCCA-TTCTTTCAAGAAACATTCCAAACATTCCATGCTCGA
65 GGTTCCTTAAAGTATTCAAGATGATCCATTTC-TACGAGCAATTTTCCGAACATTCCATGCTCGA
** *
11282 GAAATCGCATCATTCAGTCTAAATATTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
**
11347 AACTTATTTGCGTGAGAATTGTT
194 AACTTATTTATGTGAGAATTGTT
* * * * * *
11370 TCTCTCTTAGTTCTTGGATGAACTTCCGAACTTTTCAAACTTTTACAAGTTCTTTTACAACTTAG
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * * * *
11435 GTTACTTAAAGCATTCTATG-CGATCCATTCATTCTAC-A--AATTTTACTAACATTCAATGTTC
66 GTTCCTTAAAGTATTC-AAGATGATCCA-T--TTCTACGAGCAATTTTCCGAACATTCCATGCTC
* *
11496 G-GAAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTGAACAACTTTTGGTCTTTGAATT
127 GAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * *
11560 AAAAACTTATTGAAGTGGGATTTGTT
191 AAAAACTTATTTATGTGAGAATTGTT
* * * * * * *
11586 TCTCTCTTAGTTCTTGGATGAACCTCCGGAGTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCG
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * * *
11651 GTTCCCTGAAGTGTATTACATATAAAAGATCCACTTC-ATCGAGCAATTTT-TGAACATTCCATT
66 GTT-CCTTAA-AGTATT-C--A-AGATGATCCATTTCTA-CGAGCAATTTTCCGAACATTCCATG
* * * * * *
11714 CTCCGA-AAATCGAATCTTTTGGTTTAAATAGTTTTTCATTTTGTAAACATCTTTTGTTCTTTGA
124 CT-CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
11778 ATTAAAAACTTATTTATGTGA-AA--GTT
188 ATTAAAAACTTATTTATGTGAGAATTGTT
* * * * *
11804 GTCTCTCTTGGTTCTCGGACGAACTACCAAACTTGTAAAACTTTTACGAGTTATTTTATAACTTC
1 -TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* ** ** * *
11869 GATTCCTTAAAGTATTCAAGACCATCTGTTTCTATGAGCAATTTTCCAAACATTCCATGCTCGAG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGAG
* * * * * ** *
11934 AAATTGCATCTTTTGGTCTAAATAG-TTGTCATTTTGAAAAATAAGTTTTGGTCTTCAAACTAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAA-TTAA
*
11998 AAACTTATTTACGTGAGAATTGTT
193 AAACTTATTTATGTGAGAATTGTT
* ** ** * * *
12022 TATC-CTTTGGTTCTTATACGAACTTCTTAACTAGTCAAGCGTTTTATGAGTTCTTTTATAACTT
1 TCTCTC-TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTT
* * * * * * * * *
12086 TGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCAATCAATATTCC-AACATTCCATGCTCGG
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGA
* * * * *
12150 GAAATAGCATCATTCGGTCTAAATAATTTGTCATTTTGCAAACAACTTTTTGGTCCTTGAATTAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAA
* * *
12215 AAA-TATATTTATATGAGAAATATT
193 AAACT-TATTTATGTGAGAATTGTT
* * * * * * * * *
12239 TCTCTTTTGATTCTTAGACAAACTTCTGAACTTGTCAAGCTTTTACTATTTGTTCTATGATAACT
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA---GTTCTTTTATAACT
* ** * * *
12304 TCGGTTCCTTAAACTATAAAAAGATGATCCAATCCTTCGAGCAATATTT-CGAACATTCCATGCT
63 TCGGTTCCTTAAAGTAT-TCAAGATGATCCATTTCTACGAGCAAT-TTTCCGAACATTCCATGCT
* * * * * **
12368 CGGGAAATCGCATCATTCGGTCAAAATAGTTTGCCATTTTGTAAAAAAACTTTTGGTCACTGAAT
126 CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAAT
*
12433 TAAATACTTATTTATGTGTA-AATTGTT
190 TAAAAACTTATTTATGTG-AGAATTGTT
* * ** * *
12460 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGGAAAACTTTTACTATTTCTTTTATAACTTCG
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * *
12525 GTTCCTTAAAGTATTCAAGATGATCAATTTCTTCGAGCAATTTTGCGAACATTCCATGCTCGAGA
66 GTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGAGA
* * *
12590 AATTGCATCACTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
131 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* *
12655 TTTATTTACGTGAGAATTGTT
196 CTTATTTATGTGAGAATTGTT
* * * * * *
12676 TCTCTTTTGGTTCTTAGACGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATGACATT-
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTC
* * * * * *
12740 GGTTCCTTAAAGTATTCAAGGTGATCCA-TTCTTTCAAGCAATATTCCAAACATTCCAGGCTCGA
65 GGTTCCTTAAAGTATTCAAGATGATCCATTTC-TACGAGCAATTTTCCGAACATTCCATGCTCGA
* * *
12804 GAAATCGCATCATTCGGTCTAAATATTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
**
12869 AACTTATTTGCGTGAGAATTGTT
194 AACTTATTTATGTGAGAATTGTT
* * * * *
12892 TCTCTCTTAGTTCTTGGACGAACTTCGGAACTTGTCAAACTTTTACTAGTTCTTTTACAACTTAG
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * *** * * *
12957 GTTCCTTAAAGGATTCTATG-CGATCCATTCCTTTTA-CAAATTTTTCGAACATTCAATGTTCGA
66 GTTCCTTAAAGTATTC-AAGATGATCCATTTCTACGAGC-AATTTTCCGAACATTCCATGCTCGA
* * * *
13020 AAAATCGCATCATTTGATCTAAATAGTCTGTCATTTTGTGAACAACTTTTGGTCTTTGAATTAAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * *
13085 AACTTATTGACGTGCGATTTGTT
194 AACTTATTTATGTGAGAATTGTT
* * * *
13108 TCTCTCTTGGTTC-TGGACGAACCTCCGGACTTGTCAAACTTTTACAAGTTCTTTTA-ATACTTT
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATA-ACTTC
* * * ** *
13171 GGTTCCTTGAAGTGTATTATATATAAATGATCCCCTTC-ATCGAGCAATTTT-CAAACATTCCAT
65 GGTTCCTT-AA-AGTA-T-T-CA-AGATGATCCATTTCTA-CGAGCAATTTTCCGAACATTCCAT
* * * * *
13234 TCTCCGA-AAATCGAATCTTTTTGGTTTAAATAGTTTGTCATTTTGTTAACAACTTTTGGTCTTT
123 GCT-CGAGAAATCGCATC-ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
* *
13298 GAATTAAAAACTTATTTATGTGAAAATTGTC
186 GAATTAAAAACTTATTTATGTGAGAATTGTT
* * * * *
13329 TCTCTCTTGGTTTGTTGGACGAACTACCGAACTTGTAAAACTTTTACAAGTTATTTTATAACTTC
1 TCTCTCTTGG-TTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* ** * *
13394 GATTCCTTAAAGTATTCAAGACCATCCATTTCTATGAGCAATTTTCCAAACATTCCATGCTCGAG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGAG
* * * * * ** *
13459 AAATTGCATCTTTTGGTCTAAATAGTTTGTCATTCTGAAAACCAAGTTTTGGTCTTCAAACTAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAA
* * * *
13524 ACCATATTTACGAGAGAATTGTT
194 AACTTATTTATGTGAGAATTGTT
* * * * *
13547 TCTC-CTTTGGTTCTTAGACGAACTTCTGAACTAGTCAAGCTTTTACGAGTTCTTTTATAACTTT
1 TCTCTC-TTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * * *
13611 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGATCAATATTCCGAACATTCCATGCTCGGG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGAG
* * * *
13676 AAATAGCATCATTCGGTCTAAATAGTTTGTTATTTTGCAAACAACTTTTTGGTCTTTGAATTAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAA
* * *
13741 AA-TATGTTTAAGTGAGAATTATT
194 AACT-TATTTATGTGAGAATTGTT
* * * * * * * *
13764 TCTCTTTTGATTCTTAGACAAACTTCTGAACTTGTCAAGCTTTTACTATTTCTTTTATAATAACT
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC-TTT-T-ATAACT
* * *
13829 TCGGTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAGCAATATTT-CGAACATTCCATGCTC
63 TCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAAT-TTTCCGAACATTCCATGCTC
* * * * * * * * * * *
13893 GGGAAAGCACATCATTCGATCAAAATAGTTCGCCATTTT-TCACAAAAACTTTTGGTCATTGACT
127 GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-A-AACAACTTTTGGTCTTTGAAT
*
13957 TAAATACTTATTTATGTGTA-AATTGTT
190 TAAAAACTTATTTATGTG-AGAATTGTT
* ** * * * * * *
13984 TCTCTCTTGGTTCTTGGATGAACTTTTGAACTAG-GAAAGCTTCTACTATTTCTGTTATAA-TTA
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA-CTTTTACGAGTTCTTTTATAACTT-
* * * * * * * * * *
14047 TGGTTCCTTAGAGTATTCAAGATGATCAATTTGTTCGTGCAATATTCCGAACATTCAATGCTTGG
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGA
* * * *
14112 GAAATCGCATCATTCGGTCCAAATAGTTTGTCATTTCGTAAAAAAAACTTTTGGTCTTTGAATTA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAATTA
14177 AAAACTTATTTATGTGTA-AATTGTT
192 AAAACTTATTTATGTG-AGAATTGTT
* * * * ** * *
14202 TCACTCTTGATTCTTGGACGTACTTCCGAACTCGGAAAACTTTTACTA-TTTTTGTTATAACTTC
1 TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT-TTATAACTTC
* * *
14266 AGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAGCAATTTTGCGAACATTCCATGCTCGAG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGAG
* * *
14331 AAATTGCATCACTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
** * *
14396 ACTTATTTGCGTGAGAATCGTC
195 ACTTATTTATGTGAGAATTGTT
* *
14418 TCTCTCTTAGTTCTTGGATGAACTTTCGAACTTGTCAAACTTGTCAAACTTTTACGAGTTCTTTT
1 TCTCTCTTGGTTCTTGGACGAAC-TTC---C--G---AACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * * * * *
14483 ACAACTTAGGTTCCTTAAAGCATTCTATACGATCCATTCCTTCTA-CAAATTTTTCGAACA-TCC
57 ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGC-AATTTTCCGAACATTCC
* * * **
14546 AATGTTCGTA-AAATCGCATAATTTGATCTAAATAGTTTGTCATTTTGCGAACAACTTTTGGTCT
121 -ATGCTCG-AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCT
* * * *
14610 TTGAATTAAAAACTTATTGACGTGGGATTTGTT
184 TTGAATTAAAAACTTATTTATGTGAGAATTGTT
* * * * *
14643 TCTCACTTGGTTCTTGGATGAACCTCC-AGACTTGTCAAACTTTTACAAGTTCTTTTAAAACTTC
1 TCTCTCTTGGTTCTTGGACGAACTTCCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * * * *
14707 GGTTCCTTGAAGTGTATTATATATAAATGATCCACTTC-ATCGAGCAATTTT-TGAGCATTCCAT
65 GGTTCCTT-AA-AGTA-T-T-CA-AGATGATCCATTTCTA-CGAGCAATTTTCCGAACATTCCAT
* * * * *
14770 TCTCCG-GAAATCGAATCTTTTGGTTTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTG
123 GCT-CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
* * *
14834 AATTAAAAACTTATTTATGTGAAAATTATC
187 AATTAAAAACTTATTTATGTGAGAATTGTT
* * * *
14864 TCTCTCTTGGTTTTTTGGACGAACTACCGAACTTGTAAAACTTTTACGAGTTATTTTATAACTTC
1 TCTCTCTTGG-TTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
** * * * *
14929 GGTTCCTTAAAGTATTCAAGACCATCCGTTTTTACGAGCAATTTTCCAAACTTTCCATGCTCGAG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGAG
* * * * * ** *
14994 AAATTGCATCTTTTGGTATAAATAGTTTGTCATTTTGAAAACCAAGTTTTGGTCTTCAAACTAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAA
* **
15059 AACATATTTACATGAGAATTGTT
194 AACTTATTTATGTGAGAATTGTT
** ** **
15082 TCTC-CTTTGGTTCTTAAACGAACTTCTTAACTTGTCACTCTTTTACGAGTTCTTTTATAA
1 TCTCTC-TTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
15142 TTTTGTAAAA
Statistics
Matches: 5377, Mismatches: 1013, Indels: 413
0.79 0.15 0.06
Matches are distributed among these distances:
212 22 0.00
213 80 0.01
214 87 0.02
215 139 0.03
216 1730 0.32
217 1018 0.19
218 737 0.14
219 225 0.04
220 267 0.05
221 690 0.13
222 148 0.03
223 55 0.01
224 7 0.00
225 167 0.03
226 5 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
GTTCCTTAAAGTATTCAAGATGATCCATTTCTACGAGCAATTTTCCGAACATTCCATGCTCGAGA
AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
CTTATTTATGTGAGAATTGTT
Found at i:9537 original size:437 final size:430
Alignment explanation
Indices: 8329--19040 Score: 6498
Period size: 437 Copynumber: 24.4 Consensus size: 430
8319 ATCGCCTACA
* * * *
8329 TCTCTCTTGGTTCTTAAACGAACTTCTGAACTTTTCAAGCTTTTACAAGTTCTTTTATGACATT-
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC-TTC
** * *
8393 GGTTCCTTAAAGTATTCAAGGCGATCCATTCTTTCAAGCAATATTCCAAACATTCCATGCTCGAG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTCG-G
*
8458 AAATCGCATCATTCGGTCTAAATATTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
129 AAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * * * *
8523 ACTTATTGACGTGGGATTTGTTTCTCTATTGGTTCTTGGATGAAACTCCTG-ACTTGTCAAACTT
194 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AACTTCTGAACTTGTCAAACTT
* * * * * * * *
8587 TTACAAGGTCTTTTAAAACTTCAGTTCCTTAAAGTGTATTAAATATAAATGATCCACTTCATCGA
258 TTACTAGTTCTTTTATAACTTCGGTTCCTTAAA--GTATT---CA-AGATGATCCATTTCTTCGA
* * * * * *
8652 GCAATTTACGAACATTCCATTCTTCGA-AAATCGAATCTTTTGGTTTAAATAGTTTGTCATTTTG
317 GCAATTTTCGAACATTCCATGC-TCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTG
* * *
8716 TAAACAACTTTTGGTCTTTGAGTTAAAAACTTATTTATGTGAAAATTGTC
381 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
* * * * * * * *
8766 TCTCCCTTGGTTCTTGGACGAACTACCGAACTTGTAAAACTTTTACGAGTTATTTTATTACTTCG
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCG
* ** * * * *
8831 ATTCCTTAAAGTATTCAAGACCATCCTTTTCTACGAGCAATTTTCCAAACATTCCATGCTCGAGA
66 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTCG-GA
* * * * * ** *
8896 AATTGCATCTTTTGGTCTAAATAG-TTGTCATTTTGAAAACCAAATTTTGGTCTTCAAACTAAAA
130 AATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAA
* * * * *
8960 ACTTATTTATGTGAGAATTGTTTCTC-CTTTGGTTCTTTGACAAACTTCTGTACTAGTCAAGCTT
194 ACTTATTTATGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAAC-T
* * * *
9024 TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGATCAAT
257 TTTACTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAGCAAT
* * * *
9089 ATTCCGAACATTCCATGTTCGA-AAATAGCATCATTCGGTCTAAATAGTTTGTCATTTTGCAAAC
322 -TTTCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAAC
* ** *
9153 AACTTTTTGGTCCTTGAATTAAAAA-TATATTTATGAAAGAATTATT
386 AAC-TTTTGGTCTTTGAATTAAAAACT-TATTTATGTGAGAATTGTT
* * * * * *
9199 TCTCTTTTGATTCTTAGACAAACTTCTAAACTTGTCAAGCTTTTACTATTTCTTCTATGATAACT
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTT-T-T-ATAACT
* * * *
9264 TCGGTTCCTTAAACTATCCAAGATGATCCAATCCTTCGAGCAATATTCAAAACATTCCATGCTCT
63 TCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTC-
* * * * **
9329 GGAAATCGCATCATTCGGTCAAAATAGTTTGCCATTTCGTAAAAAAAACTTTTGGTCACTGAATT
127 GGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAATT
* * * * * **
9394 AAATACTAATTTATTTGTA-AATTGTTTCTCTTTTGGTTCTTGGACGAACTT-TCGAACTAGGAA
190 AAAAACTTATTTATGTG-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCA
* * *
9457 AACTTTTACTA-TTTTTGTTATAACTACGGTTCCTTAAAGTATTCAATATGATCCATTTCTTCGA
253 AACTTTTACTAGTTCTT-TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCGA
*
9521 GCAATTTTACGAACATTCCATGCTCGAGAAATTGCATCACTT-GGTCTAAATAGTTTGTCATTTT
317 GCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCA-TTCGGTCTAAATAGTTTGTCATTTT
*
9585 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
380 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
* * * * * *
9636 TCTGTCTTGGTTCATAGGCGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCCTTTATGACATT-
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC-TTC
* ** * * * *
9700 GGTTCCTTAATGTATTCAAGGCGATCAATTCTTTCAAGCAACATTCCAAACATTCCATGCTCGAG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTCG-G
* *
9765 AAATCGCATCATTAGGTCTAAATATTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
129 AAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
** * *
9830 ACTTATTTGCGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTCTGAACTTGTCAAACTTT
194 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTT
* * * * * * * *
9895 TACGAGTTCTTTTACAACTTAGGTTCCTTAAAGCATTCTATG-CGATCCATTCCTTCTA-CAAAT
259 TACTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGATGATCCATTTCTTCGAGC-AA-
* * * *
9958 TTTTCGAACATTCAATGTTCG-GAAAATCGCATCA-TCTGATCTAAATAGTTTGTCATTTTGTGA
321 TTTTCGAACATTCCATGCTCGAG-AAATCGCATCATTC-GGTCTAAATAGTTTGTCATTTTGTAA
* * * * *
10021 ACAACTTTTGGTCTTTGAATAAAAAACTTATTGACGTGGGATTTGTT
384 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
* * * * * *
10068 TCTCTCTTGGTTCTTGGACGTACCTC-CAGACTTGTCAAACTTTTA-GAAGTTCTTTTAGAACTT
1 TCTCTCTTGGTTCTTAGACGAACTTCTGA-ACTTGTCAAGCTTTTACG-AGTTCTTTTATAACTT
* * * * * * *
10131 TGGTTCCTTGAAGTGTATTATATATAAATGATCCACTT-CATCGAGCAAT-TTTCGAACATTCCA
64 CGGTTCCTT-AA-AGTA-T-T-CA-AGATGATCCA-TTCCTTCGAGCAATATTCCAAACATTCCA
* * * * * * * * *
10194 TTCTTCGGAAATTGAATCTTTTGGTTTAAATAGTTTGTGATTTTGTGAACAACTGTTGGTCTTTG
122 TGC-TCGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
* * * * * *
10259 AGTTGAAAACTTATGTATGTGAAAATTG--TCTCTCTTGGTTCTTGGACGAACTACCGAACTTGT
186 AATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGT
* * * * ** ** ***
10322 AAAACTTTTACGAGTT-ATTTATTACTTCGGTTCCTTAAAGTATTCAAGACCATCTGTTTCCAGG
251 CAAACTTTTACTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCG
* * * * * *
10386 AGCAATTTTCCAGACATTCCGTGCTCGAGAAATTGCAACTTTTGGTCTAAATAGTTTGTCATTTT
316 AGCAATTTTCGA-ACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTT
* * ** * *
10451 GAAAACCAAGTTTTGGTCTTCAAACTAAAAACTTATTT-TCGTGAAAATTGTT
380 GTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTAT-GTGAGAATTGTT
*
10503 TCTC-CTTTGGTTCTTAGACGAACTTCTGAACTAGTCAAGCTTTTTACGAGTTCTTTTATAACTT
1 TCTCTC-TTGGTTCTTAGACGAACTTCTGAACTTGTCAAGC-TTTTACGAGTTCTTTTATAACTT
* * * *
10567 TGGTTTCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAATATTCC-AACATTCCATGCTCGG
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTC-G
* * * *
10631 GAAATAGCATCATTCGGTCTAAATATTTTGTCATTTTGCAAACAACTTTTTGGTCCTTGAATTAA
128 GAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAA
** * * * * * * *
10696 AAA-TATATTTATGAAAGAATTATTTCTCTTTTGATTCTTAGACAAACTTCTAAACTTGTCAAGC
192 AAACT-TATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAAC
* * ** * * * *
10760 TTTTACTATTTCTTATATAACTTTTGTTCCTTACACTATTCAAGATGATCCAATCCTTCGAGCAA
256 TTTTACTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAGCAA
* * * * * *
10825 TATTCCGAACATTCCATGCTCGAGAAATCACATCGTTCGGTCAAAATAGTTTGCCATTTCGTAAA
321 T-TTTCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGT--A
* *** * *
10890 AAAAACTTTTGGTCACCGAATTAAATACTTATTTATTTGTA-AATTGTT
383 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAATTGTT
* * * ** * * * ** * * *
10938 CCTCACTTTGTTCTCGGATGAACTT-TCGAGCTAGGAAAACTTTTACTA-TTTTTGTTATAACTT
1 TCTCTCTTGGTTCTTAGACGAACTTCT-GAACTTGTCAAGCTTTTACGAGTTCTT-TTATAACTT
* * * * *
11001 CGATTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAGCAATTTTACGAACATTCCATGCTCGA
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTCG-
* *
11066 GAAATTGCATCACTT-GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTGA
128 GAAATCGCATCA-TTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * * * *
11130 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGATGAACTTCTGAAATTTTCAAGCT
192 AAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACT
* * * ** * *
11195 TTTACGAGTTCTTTTATGACATT-GGATCCTTAAAGTATTCAAGGCGATCCA-TTCTTTCAAGAA
257 TTTACTAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGATGATCCATTTC-TTCGAGCA
* * * * *
11258 ACATTCCAAACATTCCATGCTCGAGAAATCGCATCATTCAGTCTAAATATTTTGTCATTTTGTAA
320 A-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAA
**
11323 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTGCGTGAGAATTGTT
384 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
* * * * * * * * *
11370 TCTCTCTTAGTTCTTGGATGAACTTCCGAACTTTTCAAACTTTTACAAGTTCTTTTACAACTTAG
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCG
* * * * * * * * * * *
11435 GTTACTTAAAGCATTCTATG-CGATCCATTCATTCTA-CAAATTTTACTAACATTCAATGTTCGG
66 GTTCCTTAAAGTATTC-AAGATGATCCATTCCTTCGAGC-AATATTCCAAACATTCCATGCTCGG
* * *
11498 AAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTGAACAACTTTTGGTCTTTGAATTAAA
129 -AAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * * * * * * * *
11563 AACTTATTGAAGTGGGATTTGTTTCTCTCTTAGTTCTTGGATGAACCTCCGGAGTTGTCAAACTT
193 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTT
* * * * * * * *
11628 TTACAAGTTCTTTTAAAACTTCGGTTCCCTGAAGTGTATTACATATAAAAGATCCACTTCATCGA
258 TTACTAGTTCTTTTATAACTTCGGTT-CCTTAA-AGTATT-C--A-AGATGATCCATTTCTTCGA
* * * * * * *
11693 GCAATTTTTGAACATTCCATTCTCCGA-AAATCGAATCTTTTGGTTTAAATAGTTTTTCATTTTG
317 GCAATTTTCGAACATTCCATGCT-CGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTG
* *
11757 TAAACATCTTTTGTTCTTTGAATTAAAAACTTATTTATGTGA-AA--GTT
381 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
** * ** * * *
11804 GTCTCTCTTGGTTCTCGGACGAACTACCAAACTTGTAAAACTTTTACGAGTTATTTTATAACTTC
1 -TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTC
* ** ** * *
11869 GATTCCTTAAAGTATTCAAGACCATCTGTTTCTAT-GAGCAATTTTCCAAACATTCCATGCTCGA
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCCT-TCGAGCAATATTCCAAACATTCCATGCTCG-
* * * * * * ** *
11933 GAAATTGCATCTTTTGGTCTAAATAG-TTGTCATTTTGAAAAATAAGTTTTGGTCTTCAAACTAA
128 GAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAA-TTA
* * ** * * *
11997 AAAACTTATTTACGTGAGAATTGTTTATC-CTTTGGTTCTTATACGAACTTCTTAACTAGTCAAG
191 AAAACTTATTTATGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
* * * * * *
12061 CGTTTTA-TGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCAAT
255 C-TTTTACT-AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAG
* * * * * *
12125 CAATATTCCAACATTCCATGCTCGGGAAATAGCATCATTCGGTCTAAATAATTTGTCATTTTGCA
318 CAATTTTCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTA
* * * *
12190 AACAACTTTTTGGTCCTTGAATTAAAAA-TATATTTATATGAGAAATATT
383 AACAAC-TTTTGGTCTTTGAATTAAAAACT-TATTTATGTGAGAATTGTT
* * * * * *
12239 TCTCTTTTGATTCTTAGACAAACTTCTGAACTTGTCAAGCTTTTACTATTTGTTCTATGATAACT
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGA---GTTCTTTTATAACT
* ** * * *
12304 TCGGTTCCTTAAACTATAAAAAGATGATCCAATCCTTCGAGCAATATTTCGAACATTCCATGCTC
63 TCGGTTCCTTAAAGTAT-TCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTC
* * * **
12369 GGGAAATCGCATCATTCGGTCAAAATAGTTTGCCATTTTGTAAAAAAACTTTTGGTCACTGAATT
127 -GGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATT
* * **
12434 AAATACTTATTTATGTGTA-AATTGTTTCTCTCTTGGTTCTTGGACGAACTT-TCGAACTAGGAA
190 AAAAACTTATTTATGTG-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCA
* *
12497 AACTTTTACTATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCAATTTCTTCGAG
253 AACTTTTACTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAG
* *
12562 CAATTTTGCGAACATTCCATGCTCGAGAAATTGCATCACTT-GGTCTATATAGTTTGTCATTTTG
318 CAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCA-TTCGGTCTAAATAGTTTGTCATTTTG
* *
12626 TAAACAACTTTTGGTCTTTGAATTAAAAATTTATTTACGTGAGAATTGTT
381 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
* * *
12676 TCTCTTTTGGTTCTTAGACGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATGACATT-
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC-TTC
* * * *
12740 GGTTCCTTAAAGTATTCAAGGTGATCCATTCTTTCAAGCAATATTCCAAACATTCCAGGCTCGAG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTCG-G
* *
12805 AAATCGCATCATTCGGTCTAAATATTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAA
129 AAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
** * *
12870 ACTTATTTGCGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCGGAACTTGTCAAACTTT
194 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTT
* * * * * * **
12935 TACTAGTTCTTTTACAACTTAGGTTCCTTAAAGGATTCTATG-CGATCCATTCCTTTTA-CAAAT
259 TACTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGATGATCCATTTCTTCGAGC-AA-
* * * * * * *
12998 TTTTCGAACATTCAATGTTCGAAAAATCGCATCATTTGATCTAAATAGTCTGTCATTTTGTGAAC
321 TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * *
13063 AACTTTTGGTCTTTGAATTAAAAACTTATTGACGTGCGATTTGTT
386 AACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
* * * * * * *
13108 TCTCTCTTGGTTC-TGGACGAACCTCCGGACTTGTCAAACTTTTACAAGTTCTTTTA-ATACTTT
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATA-ACTTC
* * * * * *
13171 GGTTCCTTGAAGTGTATTATATATAAATGATCCCCTT-CATCGAGCAAT-TTTCAAACATTCCAT
65 GGTTCCTT-AA-AGTA-T-T-CA-AGATGAT-CCATTCCTTCGAGCAATATTCCAAACATTCCAT
* * * * * * *
13234 TCTCCGAAAATCGAATCTTTTTGGTTTAAATAGTTTGTCATTTTGTTAACAACTTTTGGTCTTTG
123 GCT-CGGAAATCGCATC-ATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG
* * * * *
13299 AATTAAAAACTTATTTATGTGAAAATTGTCTCTCTCTTGGTTTGTTGGACGAACTACCGAACTTG
186 AATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGG-TTCTTGGACGAACTTCTGAACTTG
* * * * **
13364 TAAAACTTTTACAAGTTATTTTATAACTTCGATTCCTTAAAGTATTCAAGACCATCCATTTCTAT
250 TCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCT-T
* * * *
13429 -GAGCAATTTTCCAAACATTCCATGCTCGAGAAATTGCATCTTTTGGTCTAAATAGTTTGTCATT
314 CGAGCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATT
* * * ** * * * * *
13493 CTGAAAACCAAGTTTTGGTCTTCAAACTAAAACCATATTTACGAGAGAATTGTT
378 TTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
* *
13547 TCTC-CTTTGGTTCTTAGACGAACTTCTGAACTAGTCAAGCTTTTACGAGTTCTTTTATAACTTT
1 TCTCTC-TTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTC
* *
13611 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGATCAATATTCCGAACATTCCATGCTCGGG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTC-GG
* * *
13676 AAATAGCATCATTCGGTCTAAATAGTTTGTTATTTTGCAAACAACTTTTTGGTCTTTGAATTAAA
129 AAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAA
* * * * * * * *
13741 AA-TATGTTTAAGTGAGAATTATTTCTCTTTTGATTCTTAGACAAACTTCTGAACTTGTCAAGCT
193 AACT-TATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACT
* * *
13805 TTTACTATTTCTTTTATAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAGC
257 TTTACTAGTTC-TTT-T-ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAGC
* * * * * * *
13870 AATATTTCGAACATTCCATGCTCGGGAAAGCACATCATTCGATCAAAATAGTTCGCCATTTT-TC
319 AAT-TTTCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGT-
* * * *
13934 ACAAAAACTTTTGGTCATTGACTTAAATACTTATTTATGTGTA-AATTGTT
382 A-AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAATTGTT
* * * * ** * * * * *
13984 TCTCTCTTGGTTCTTGGATGAACTTTTGAACTAGGAAAGCTTCTACTATTTCTGTTATAA-TTAT
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTT-C
* * ** * * * *
14048 GGTTCCTTAGAGTATTCAAGATGATCAATTTGTTCGTGCAATATTCCGAACATTCAATGCTTGGG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGC-TCGG
* * *
14113 AAATCGCATCATTCGGTCCAAATAGTTTGTCATTTCGTAAAAAAAACTTTTGGTCTTTGAATTAA
129 AAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAATTAA
* * * * * **
14178 AAACTTATTTATGTGTA-AATTGTTTCACTCTTGATTCTTGGACGTACTTCCGAACTCGGAAAAC
192 AAACTTATTTATGTG-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAAC
* *
14242 TTTTACTA-TTTTTGTTATAACTTCAGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAGCA
256 TTTTACTAGTTCTT-TTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAGCA
* *
14306 ATTTTGCGAACATTCCATGCTCGAGAAATTGCATCACTT-GGTCTATATAGTTTGTCATTTTGTA
320 ATTTT-CGAACATTCCATGCTCGAGAAATCGCATCA-TTCGGTCTAAATAGTTTGTCATTTTGTA
** * *
14370 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTGCGTGAGAATCGTC
383 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
* * * *
14418 TCTCTCTTAGTTCTTGGATGAACTTTCGAACTTGTCAAACTTGTCAAACTTTTACGAGTTCTTTT
1 TCTCTCTTGGTTCTT--A-G-A----CGAACTTCT-GAACTTGTCAAGCTTTTACGAGTTCTTTT
* * * * * * * * * *
14483 ACAACTTAGGTTCCTTAAAGCATTCTATACGATCCATTCCTTCTA-CAAATTTTTCGAACA-TCC
57 ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGC-AATATTCCAAACATTCC
* * * * * **
14546 AATGTTCGTAAAATCGCATAATTTGATCTAAATAGTTTGTCATTTTGCGAACAACTTTTGGTCTT
121 -ATGCTCG-GAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
* * * * * * * *
14611 TGAATTAAAAACTTATTGACGTGGGATTTGTTTCTCACTTGGTTCTTGGATGAACCTC-CAGACT
184 TGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA-ACT
* * * * *
14675 TGTCAAACTTTTACAAGTTCTTTTAAAACTTCGGTTCCTTGAAGTGTATTATATATAAATGATCC
248 TGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCCTT-AA-AGTA-T-T-CA-AGATGATCC
* * * * * * * * *
14740 ACTTCATCGAGCAATTTTTGAGCATTCCATTCTCCG-GAAATCGAATCTTTTGGTTTAAATAGTT
307 ATTTCTTCGAGCAATTTTCGAACATTCCATGCT-CGAGAAATCGCATCATTCGGTCTAAATAGTT
* * * *
14804 TGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTTATTTATGTGAAAATTATC
371 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
* * * * * * *
14864 TCTCTCTTGGTTTTTTGGACGAACTACCGAACTTGTAAAACTTTTACGAGTTATTTTATAACTTC
1 TCTCTCTTGG-TTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTC
** * * * *
14929 GGTTCCTTAAAGTATTCAAGACCATCCGTT-TTTACGAGCAATTTTCCAAACTTTCCATGCTCGA
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTT-CGAGCAATATTCCAAACATTCCATGCTCG-
* * * * * * ** *
14993 GAAATTGCATCTTTTGGTATAAATAGTTTGTCATTTTGAAAACCAAGTTTTGGTCTTCAAACTAA
128 GAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAA
* ** ** * **
15058 AAACATATTTACATGAGAATTGTTTCTC-CTTTGGTTCTTAAACGAACTTCTTAACTTGTCACTC
192 AAACTTATTTATGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAAC
* ** ***** * * * * *
15122 TTTTACGAGTTCTTTTATAA-TTTTGTAAAAAAACATTTGGTCATTGAA-TTAAATACTTATTTA
256 TTTTACTAGTTCTTTTATAACTTCGGTTCCTTAA-A----GT-ATTCAAGAT-GAT-C-CATTTC
*** ** * * * * *** * *
15185 TGT-GTA--AACTGTTTCTCTC-TT-GGTTCTTG-G--A-CG-AACTTTCAAACTAGGAAAACTT
312 T-TCG-AGCAA-T-TTTCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTA--AATAGTT
* * * * * * * *
15240 T-TACTATTTCTG-ATATAAC-TTCGGTTCCTTAAAGTATTCAAGA-TGGTCCATTTCT-TCGAG
371 TGT-C-ATTT-TGTAAACAACTTTTGG-T-CTT--TGAATTAAAAACT--T--ATTTATGT-GAG
15300 CAATT-TT
424 -AATTGTT
* *** ** * * * *
15307 GCGAACATTCCATGC-TCGA-GAAATTGCAT-CACTTGGTCTAAATAG-TTTGT-C-A-TT-TTG
1 TCTCTC-TT-GGTTCTTAGACGAACTT-C-TGAACTT-GTC---A-AGCTTT-TACGAGTTCTT-
* * * * * * * * * * * * ***
15364 TAAACAACTTTTGG-T-CTT--TGAATTAAAAACTTAT---TTACGT-GAG-AATTGTTTCTGTC
55 T-TATAAC-TTCGGTTCCTTAAAGTATTCAAGA-TGATCCATTCCTTCGAGCAA-TATTCCAAAC
* * ** * * ** ** * *
15420 -TT---GGTTCTTAGA-CG-AAC-TTCAGAACT-TTTCAAGTTTTTACGAGTTCTTTTATAAC-A
116 ATTCCATGCTCGGAAATCGCATCATTC-GGTCTAAAT--AGTTTGT-C-A-TT-TTGTA-AACAA
** * * * * * * * ** * **
15476 ---TTGGTTCCCTAAAGTATTCAAGACGATCCATTCT-T-TCAAGCAA-TATTCCAAATATTCCA
173 CTTTTGG-T--CT-TTGAATTAAAAAC--T-TATT-TATGT-GAG-AATTGTTTC-TCTCTT-GG
* * * * * *
15535 TGC-TAGA-GAA-AT-TGCATCTTTTGGTCTAAA-TAGTT--T-G-TCATTTTGAAAACCAAGTT
226 TTCTTGGACGAACTTCTG-AAC--TT-GTC-AAACT-TTTACTAGTTC-TTTT-ATAA-C----T
* * * * * * * * *
15591 TTGGTCTTCAAATTAAAAACTTATTTATGTGAGAATTGTTTCTCCTTTGGTTCTTAGACGAA-CT
278 TCGG--TTC--CTT--AAA-GTATTCA----AG-A-TG-ATC-CATTT-CTTC-GAG-C-AATTT
* * * ** ** ** * * * *
15655 TCAAAACTAGT-CAAGCTTTTATGAGTTCTTTTATAAATCTGGTTCCTTAA-AGTTTTCAAGACA
324 TC-GAAC-ATTCCATGC-TCGA-GAAATC--GCATCATTC-GG-T-CTAAATAG-TTT---GTC-
* * * ** * ** * * ** *
15718 ATCTATTCCTTCGATCAA-TATTTCGAACATTCCATGCTCGGGAAATAGCATCA-TTCGGTCTA-
375 AT-T-TT--GT-AAACAACT-TTT-GGTCTTTGAAT--T----AAA-AAC-TTATTTATGT-GAG
*
15780 AATAGTT
424 AATTGTT
* * * * ** * ** * *
15787 TGTCGT-TT--TGC--AAAC-AACTTTTTGGTCTT-TGAA----TTAAAAATATATTTATATGAG
1 TCTC-TCTTGGTTCTTAGACGAAC-TTCTGAACTTGTCAAGCTTTTACGAGT-TCTTT-TAT-A-
* * ** * * ** * ** *
15841 AATT-AGTTCTCTT-TTG-ATTCTTAGA-CAAAC-TT--TT-GA--ACT-TGT-CAGGCTTTTAC
60 ACTTCGGTTC-CTTAAAGTATTC-AAGATGATCCATTCCTTCGAGCAATAT-TCCAAAC-ATT-C
* * *** * * *
15894 TATTTCTTTTATAAT---AAC-TTCGGTTCCTTAAAGTA-TTCAAGATGATCAATTCCTT-CAAG
120 CA-TGCTCGGA-AATCGCATCATTCGG-T-C-TAAA-TAGTT-----TG-TC-ATT--TTGTAAA
* ** * ** * ** ** * * *
15953 CAA-TATTCCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCAAAATAGTTTGC-CAT-TT
170 CAACT-TT-TGGTCTTTGAAT--T--A-AAAACTTAT--TTATGTGAGAATTGTTT-CTC-TCTT
* * * * ** * * * *
16015 TGTAAAAAAACTTTTGGTCACTGAATTAAATACTTATTTATGTGTAAATTGTTTCGCTCTTGGTT
224 GGT--------TCTTGG--AC-GAACT---T-CTGAACT-TGT-CAAACT-TTT---AC-TAGTT
** * ** **** * * ** * **
16080 CTTGGACGAACTTTCGAACTAGGAAAACT-TTTACTAT-TTCTGTTATAACTTCG-GTTCCTTAA
267 CTTTTA-TAAC-TTCG-GTTCCTTAAAGTATTCAAGATGATCCATT-T--CTTCGAG---C---A
* *
16142 ATTATTC-AAGATGATCCATTTCTTCGAGCAAATTTGCGAGCATTCCATGCTCGAGAAATTGCAT
320 ATT-TTCGAACAT--TCCA-TGC-TCGAG-AAA--T-C--G-----CA---TC-----A-T---T
16206 CACTTGGTCTAAATAGTTTGTCATTTTGTAAACAGA-TTTTGGTCTTTGAATTAAAAACTTATTT
357 --C--GGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTGGTCTTTGAATTAAAAACTTATTT
*
16270 ACGTGAGAATTGTT
417 ATGTGAGAATTGTT
* *
16284 TCTCTCTTGGTTCTTAGACGAACTTCAGAACTTTTCAAGCTTTTACGAGTTCTTTTATAACATT-
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC-TTC
* * * *
16348 GGTTCCTTAAAGTATTCAATATGATCCATTCTTTCAAGCAATATTCCAGACATTCCATGCTCGAG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTCG-G
* * ** *
16413 AAATCGCATCATTCGGTTTAAATA-TTTAGTTATTTTGTAAACAACTTTCAGTCTTTTAATTAAA
129 AAATCGCATCATTCGGTCTAAATAGTTT-GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* ** * ** *
16477 AACTTATTTACGT--G---TGTTTCTCTCTTAATTCTTTGATAAACTTCCGAACTTGTCAAACTT
193 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTT
* * * * * * *
16537 TTA-TGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCTATG-CGATCCATTCCATCTA-CAA
258 TTACT-AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGATGATCCATTTCTTCGAGCAA
* * * * * * *
16599 TTTTTTCGAACATTCAATGTTCGAAAAATCGCATCATTTGATTTAAATAGTTTGTTATTTTGTAA
321 --TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAA
* * * * *
16664 ACAACTTTTGGTCCTTGAATTAAAAACTTATTGACGTGGGATTTGTT
384 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
* * * * * *
16711 TCTCTCTTGGTTCTTGGACGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCG
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCG
* * * *** *
16776 GTTCCTTGAAGTGTATT-ATAAATGATCCACTT-CATCGAGCAAT-TTTTGAACATTCCATTCTT
66 GTTCCTT-AA-AGTATTCA-AGATGATCCA-TTCCTTCGAGCAATATTCCAAACATTCCATGC-T
* ** * * *
16838 CGAAAATCAAATCGTTTGGGT-TAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATT
126 CGGAAATCGCATC-ATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
16902 AAAAAACTTATTTATGTGAAAATTATCTCTCTCTTGGTTCTTGGACGAACTACGGAACTTGTAAA
190 -AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
* * * ** * *
16967 ACTTTTACGAGTTATTTTATAACTTCGGCTCCTTAAAGTATTCAAGACCATCCATTTCTACGACC
254 ACTTTTACTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAGC
* * * * * * *
17032 AATTTTCCAAGCATTCCATGCTCCAGAAATTGCATCTTTTGGTCTAAATAGTTTGTCATTCTGAA
319 AATTTTCGAA-CATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTA
* ** * * *
17097 AACCAAGTTTTGGTCTTCAAACTAAAAACATATTTACGTGAGAATTGTT
383 AA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
* * * *
17146 TCTC-CTTTGGTTTTTAAACGAACTTCTGAACTAGTCAAGCTTTTACGAGTTCTTTTATAACTTT
1 TCTCTC-TTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTC
* * * * *
17210 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAATATTTCGAATATTCCATGCTCGGG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTC-GG
* * *
17275 AAATAGCATCATTCGGTCTAAATAG-TTGTTATTTTGCAAACAACTTTTTGGTCTTTGAATTAAA
129 AAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAA
* * * * * * *
17339 AA-TATGTTTAAGTGAGAATTATTTCTCTTTTGATTCTTGGACAAACTTCTGAACTTGTCAAGCT
193 AACT-TATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACT
* * *
17403 TTTACTATTTCTTTTATAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAGC
257 TTTACTAGTTC-TTT-T-ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAGC
* * * *
17468 AATATTTCGAACATTCCATGCTCGGGAAATCACATCATTCGGTCAAAATAGTTTGCCATTTTGTA
319 AAT-TTTCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTA
* * * *
17533 CAAAAACTTTTGGTCATTGACTTAAATACTTATTTATGTGTA-AATTGTT
383 -AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAATTGTT
* * * * ** * * * *
17582 TCTCTCTTGGTTCTTGGATGAACTTCCGAACTAGGAAAGCTTCTACTATTTCTGTTATAACTAT-
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACT-TC
* * * * * *
17646 GGTTCCTTAGAGTATTCAAGATGATCAATTTCTTCGAGCAATTTTGCGAACATTCCATGCTCGAG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTCG-G
*
17711 AAATTGCATCACTT-GGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTT-GTCTTTGAATTAAA
129 AAATCGCATCA-TTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * *
17773 AACTTATTTATGTGAGAATTGATTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTTTCAAGCTT
193 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTT
** * * *
17838 TTAAGAGTTCTTTTATAACATT-GGTTCCTTAACGTATTCAAGACGATCCA-TTCTTTCAAGCAA
258 TTACTAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGATGATCCATTTC-TTCGAGCAA
* * * *
17901 TATTCCAAACATTCCATGCTCGAGAAATCGCATCATTCAGTCTAAATATTTTGTCATTTTGTAAA
321 T-TTTCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
17966 CAACTTTTGGTCATTGAATTAAAAACTTATTTACGTGAGAATTGAT
385 CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
* * * * * * * *
18012 TCTCTCTTAGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTATGAGTT-ATTTATAACTTAG
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCG
* * * * * * ** *
18076 GTTCCTTAAAGCATTC--TATGCCATCCATTCCATCTA-CAAATTTTTCGGACA-TCCAATGTTC
66 GTTCCTTAAAGTATTCAAGATG--ATCCATTCCTTCGAGC-AATATTCCAAACATTCC-ATGCTC
* * * * *
18137 GAAAAATCGCATCATTTGATCTAAATAGTTTGACATTTTGTGAACAACTTTTGGTCTTTGAATTA
127 G-GAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * * * *
18202 AAAACTTATTGACGTGGGATTTGTTTCTCTCTTGGTTCTTGGACGAACCTCCGAACTTGTCAAAC
191 AAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAAC
* * * * * *
18267 TTTTACAAGTTCTTTTAAAACTTCGGTTCCTTGAAGTGTATT-ATAAATGATCCACTTCATCGAG
256 TTTTACTAGTTCTTTTATAACTTCGGTTCCTT-AA-AGTATTCA-AGATGATCCATTTCTTCGAG
* ** * * * *
18331 CAATTTTCGAACATTCCATTCTTCG-GAAATCAAATCTTTTGGTTTAAATAGCTTGTCATTTTGT
318 CAATTTTCGAACATTCCATGC-TCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGT
* * * *
18395 AAACAACATTTGGTCTTTGAATTAAAAAACTTATTTATGTGAAAATTATC
382 AAACAACTTTTGGTCTTTGAATT-AAAAACTTATTTATGTGAGAATTGTT
* * * * * *
18445 TCTCTCTTGGTTCTTGGACGAACTACGGAACTTGTAAAACTTTTACGAGTTATTTTATAACTTCG
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCG
** * * * * * * *
18510 GTTCCTTAAAGTATTCAAGACCATTCATTTCTACGAGCAAATTTTCCAAGCATTCCTTGCTCCAG
66 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGC-AATATTCCAAACATTCCATGCT-CGG
* * * * * ** **
18575 AAATTGCATCTTTTGGTCTAAATAGTTTGTCATTTTGAAAACCAAGTTTTGGTCTTCAAACAAAA
129 AAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAA
* ** * * *
18640 AACATATTTACATGAGAATTGTTTCTC-CTTTGGTTCTTAGACGAACTTCTGAACTAGTCAAGCT
193 AACTTATTTATGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACT
* * * * * *
18704 TTTACAAGTTCTTTTATAAATTTGGTTCCTTAAATTATTCAAGATGATCCATTCCTTCGATCAAT
257 TTTACTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAGCAAT
* * * * *
18769 ATTCCGAACATTCCATTCTCGGGAAATAGCATCATTCGGTCTAAATAGTTTGTCATTTTGCAAAC
322 -TTTCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAAC
* *
18834 AACTTTTTGGTGTTTGAATTAAAAA-TATATTTATGTGAAAATTAG-T
386 AAC-TTTTGGTCTTTGAATTAAAAACT-TATTTATGTGAGAATT-GTT
* * * * * * *
18880 TCTCTTTTGATTCTTAGACAAACTTCTGAACTTGTCAAGATTTTACTATTTATTTTATAATAACT
1 TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTT-CTTT-T-ATAACT
* * * *
18945 TCGGTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAACAATATTACAAACATTCCATGCTTG
63 TCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGC-TC
* * *
19010 GGAAATCACATCATTCGGACAAAATAGTTTG
127 GGAAATCGCATCATTCGGTCTAAATAGTTTG
19041 CCTCTGATGG
Statistics
Matches: 7921, Mismatches: 1759, Indels: 1190
0.73 0.16 0.11
Matches are distributed among these distances:
426 3 0.00
427 129 0.02
428 64 0.01
429 142 0.02
430 164 0.02
431 352 0.04
432 922 0.12
433 472 0.06
434 1032 0.13
435 832 0.11
436 630 0.08
437 1159 0.15
438 720 0.09
439 210 0.03
440 82 0.01
441 123 0.02
442 38 0.00
443 133 0.02
444 20 0.00
445 9 0.00
446 102 0.01
447 39 0.00
448 7 0.00
449 4 0.00
450 3 0.00
451 1 0.00
452 1 0.00
453 5 0.00
454 6 0.00
455 7 0.00
456 9 0.00
457 6 0.00
458 7 0.00
459 1 0.00
460 4 0.00
461 2 0.00
462 3 0.00
463 5 0.00
464 5 0.00
465 10 0.00
466 9 0.00
467 1 0.00
468 5 0.00
469 12 0.00
470 18 0.00
471 9 0.00
472 11 0.00
473 13 0.00
474 5 0.00
475 17 0.00
476 11 0.00
477 5 0.00
478 6 0.00
479 10 0.00
480 16 0.00
481 11 0.00
482 8 0.00
483 6 0.00
484 6 0.00
485 6 0.00
486 3 0.00
487 6 0.00
488 12 0.00
489 2 0.00
490 5 0.00
491 3 0.00
492 6 0.00
493 10 0.00
495 14 0.00
496 7 0.00
497 20 0.00
498 10 0.00
499 7 0.00
500 10 0.00
501 19 0.00
502 19 0.00
503 12 0.00
504 17 0.00
505 15 0.00
506 13 0.00
507 4 0.00
508 13 0.00
509 9 0.00
510 7 0.00
511 10 0.00
512 5 0.00
513 1 0.00
514 7 0.00
515 4 0.00
516 3 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (430 bp):
TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCG
GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTCGGAA
ATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
CTAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAGCAATTTTC
GAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
TTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
Found at i:10230 original size:653 final size:645
Alignment explanation
Indices: 8329--19040 Score: 7825
Period size: 653 Copynumber: 16.2 Consensus size: 645
8319 ATCGCCTACA
** * * * *
8329 TCTCTCTTGGTTCTTAAACGAACTTCTGAACTTTTCAAGCTTTTACAAGTTCTTTTATGACATT-
1 TCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTC
** * *
8393 GGTTCCTTAAAGTATTCAAGGCGATCCATTCTTTCAAGCAATATTCCAAACATTCCATGCTCGAG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAATATTCCGAACATTCCATGCTCGAG
* *
8458 AAATCGCATCATTCGGTCTAAATATTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * * * * * *
8523 ACTTATTGACGTGGGATTTGTTTCTCTATTGGTTCTTGGATGAAACTCCTG-ACTTGTCAAACTT
195 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACG-AACTTCTGAACTTGTCAAACTT
* * * * * * * *
8587 TTACAAGGTCTTTTAAAACTTCAGTTCCTTAAAGTGTATTAAATATAAATGATCCACTT-CATCG
259 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAA--GTATT---CA-AGACGATCCA-TTCCTTCG
* * * * *
8651 AGCAA-TTTACGAACATTCCATTCTTC-GAAAATCGAATCTTTTGGTTTAAATAGTTTGTCATTT
317 AGCAATTTTTCGAACATTCCATGC-TCGGAAAATCGCATC-ATTGGTCTAAATAGTTTGTCATTT
* * * * *
8714 TGTAAACAACTTTTGGTCTTTGAGTTAAAAACTTATTTATGTGAAAATTGTCTCTCCCTTGGTTC
380 TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* * * * *
8779 TTGGACGAA-CTACCGAACTTGTAAAACTTTTACGAGTTATTTTATTACTTCGATTCCTTAAAGT
445 TTGGACGAACCT-CCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGT
* ** * * * *
8843 ATTCAAGACCATCCTTTTCTACGAGCAATTTTCCAAACATTCCATGCTCGAGAAATTGCATCTTT
509 ATTTAAGATGATCC-ATTCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATTGCATCATT
* * ** *
8908 TGGTCTAAATAG-TTGTCATTTTGAAAACCAAATTTTGGTCTTCAAACTAAAAACTTATTTATGT
572 TGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGT
8972 GAGAATTGTT
636 GAGAATTGTT
* * * * *
8982 TCTC-CTTTGGTTCTTTGACAAACTTCTGTACTAGTCAAGCTTTTTACGAGTTCTTTTATAACTT
1 TCTCTC-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTT
* * * *
9046 TGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGATCAATATTCCGAACATTCCATGTTCGA
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAATATTCCGAACATTCCATGCTCGA
* * * *
9111 -AAATAGCATCATTCGGTCTAAATAGTTTGTCATTTTGCAAACAACTTTTTGGTCCTTGAATTAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAA
* ** * * * * * *
9175 AAA-TATATTTATGAAAGAATTATTTCTCTTTTGATTCTTAGACAAACTTCTAAACTTGTCAAGC
193 AAACT-TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAAC
* * * * * *
9239 TTTTACTATTTCTTCTATGATAACTTCGGTTCCTTAAACTATCCAAGATGATCCAATCCTTCGAG
257 TTTTACGAGTTCTT-T-T-ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * *
9304 CAA-TATTCAAAACATTCCATGCTCTGG-AAATCGCATCATTCGGTCAAAATAGTTTGCCATTTC
319 CAATTTTTC-GAACATTCCATGCTC-GGAAAATCGCATCATT-GGTCTAAATAGTTTGTCATTTT
* ** * * ** *
9367 GTAAAAAAAACTTTTGGTCACTGAATTAAATACTAATTTATTTGTA-AATTGTTTCTCTTTTGGT
381 GT--AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AGAATTGTTTCTCTCTTGGT
* * * ** * * *
9431 TCTTGGACGAACTTTCGAACTAGGAAAACTTTTACTA-TTTTTGTTATAACTACGGTTCCTTAAA
443 TCTTGGACGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTT-TTATAACTTCGGTTCCTTAAA
* *
9495 GTATTCAATATGATCCATTTCTTCGAGCAATTTTACGAACATTCCATGCTCGAGAAATTGCATCA
507 GTATTTAAGATGATCCA-TTCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATTGCATCA
* *
9560 CTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
570 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATG
9625 TGAGAATTGTT
635 TGAGAATTGTT
* * * * * *
9636 TCTGTCTTGGTTCATAGG-CGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCCTTTATGACATT
1 TCTCTCTTGGTTC-TTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TT
* ** * * * *
9700 -GGTTCCTTAATGTATTCAAGGCGATCAATTCTTTCAAGCAACATTCCAAACATTCCATGCTCGA
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAATATTCCGAACATTCCATGCTCGA
* *
9764 GAAATCGCATCATTAGGTCTAAATATTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * *
9829 AACTTATTTGCGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTCTGAACTTGTCAAACTT
194 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTT
* * * * *
9894 TTACGAGTTCTTTTACAACTTAGGTTCCTTAAAGCATTCTATG-CGATCCATTCCTTCTA-CAAA
259 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTCGAGC-AA
* * * *
9957 TTTTTCGAACATTCAATGTTCGGAAAATCGCATCATCTGATCTAAATAGTTTGTCATTTTGTGAA
322 TTTTTCGAACATTCCATGCTCGGAAAATCGCATCAT-TGGTCTAAATAGTTTGTCATTTTGTAAA
* * * *
10022 CAACTTTTGGTCTTTGAATAAAAAACTTATTGACGTGGGATTTGTTTCTCTCTTGGTTCTTGGAC
386 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * * * *
10087 GTACCTCC-AGACTTGTCAAACTTTTAGAAGTTCTTTTAGAACTTTGGTTCCTTGAAGTGTATTA
451 GAACCTCCGA-ACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTT-AA-AGTA-T-
* * * * *
10151 TATATAAATGATCCACTTCATCGAGCAATTTTCGAACATTCCATTCTTCG-GAAATTGAATCTTT
511 T-TA-AGATGATCCA-TTCTTCGAGCAATTTTCGAACATTCCATGC-TCGAGAAATTGCATCATT
* * * * * * *
10215 TGGTTTAAATAGTTTGTGATTTTGTGAACAACTGTTGGTCTTTGAGTTGAAAACTTATGTATGTG
572 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG
*
10280 AAAATTG--
637 AGAATTGTT
* * * * *
10287 TCTCTCTTGGTTCTTGGACGAACTACCGAACTTGTAAAACTTTTACGAGTT-ATTTATTACTTCG
1 TCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * *
10351 GTTCCTTAAAGTATTC-A-A-GA-CCATCTGTTTCCAGGAGCAATTTTCC-AGACATTCCGTGCT
66 GTTCCTTAAAGTATTCAAGATGATCCAT-TCTTT-C--GAGCAATATTCCGA-ACATTCCATGCT
* * * * * ** *
10411 CGAGAAATTGCAACTTTTGGTCTAAATAGTTTGTCATTTTGAAAACCAAGTTTTGGTCTTCAAAC
126 CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAAT
* * *
10476 TAAAAACTTATTTTCGTGAAAATTGTTTCTC-CTTTGGTTCTTAGACGAACTTCTGAACTAGTCA
190 TAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTAGACGAACTTCTGAACTTGTCA
* * *
10540 AGCTTTTTACGAGTTCTTTTATAACTTTGGTTTCTTAAAGTATTCAAGACGATCCATTCCTTCGA
254 AAC-TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * *
10605 TCAA-TATTCCAACATTCCATGCTCGGGAAATAGCATCATTCGGTCTAAATATTTTGTCATTTTG
318 GCAATTTTTCGAACATTCCATGCTCGGAAAATCGCATCATT-GGTCTAAATAGTTTGTCATTTTG
* * * ** * * *
10669 CAAACAACTTTTTGGTCCTTGAATTAAAAA-TATATTTATGAAAGAATTATTTCTCTTTTGATTC
382 TAAACAAC-TTTTGGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* * * ** * * * * ** * *
10733 TTAGACAAACTTCTAAACTTGTCAAGCTTTTACTATTTCTTATATAACTTTTGTTCCTTACACTA
445 TTGGACGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * ** * *
10798 TTCAAGATGATCCAATCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCACATCGTTC
510 TTTAAGATGATCC-ATTCTTCGAGCAAT-TTTCGAACATTCCATGCTCGAGAAATTGCATCATTT
* * * * *** * *
10863 GGTCAAAATAGTTTGCCATTTCGTAAAAAAAACTTTTGGTCACCGAATTAAATACTTATTTATTT
573 GGTCTAAATAGTTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGT
10928 GTA-AATTGTT
636 G-AGAATTGTT
* * * * * * * ** * *
10938 CCTCACTTTGTTCTCGGATGAACTT-TCGAGCTAGGAAAACTTTTACTA-TTTTTGTTATAACTT
1 TCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTT-TTATAACTT
* * *
11001 CGATTCCTTAAAGTATTCAAGATGATCCATT-TCTTCGAGCAATTTTACGAACATTCCATGCTCG
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTCT-TTCGAGCAATATTCCGAACATTCCATGCTCG
* * *
11065 AGAAATTGCATCACTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTGA
128 AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * *
11130 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGATGAACTTCTGAAATTTTCAAGCT
193 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACT
* * * * * *
11195 TTTACGAGTTCTTTTATGACATT-GGATCCTTAAAGTATTCAAGGCGATCCATTCTTTCAAGAAA
258 TTTACGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
** * * * *
11259 CATTCCAAACATTCCATGCTC-GAGAAATCGCATCATTCAGTCTAAATATTTTGTCATTTTGTAA
322 TTTTTCGAACATTCCATGCTCGGA-AAATCGCATCATT-GGTCTAAATAGTTTGTCATTTTGTAA
* *
11323 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTGCGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
385 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * * * * *
11388 TGAACTTCCGAACTTTTCAAACTTTTACAAGTTCTTTTACAACTTAGGTTACTTAAAGCATTCTA
450 CGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-TA
* * * * * * * *
11453 TG-CGATCCATTCATTCTA-CAAATTTTACTAACATTCAATGTTCG-GAAAATCGCATCATTTGA
514 AGATGATCCATTC-TTCGAGC-AATTTT-CGAACATTCCATGCTCGAG-AAATTGCATCATTTGG
* * * *
11515 TCTAAATAGTTTGTCATTTTGTGAACAACTTTTGGTCTTTGAATTAAAAACTTATTGAAGTGGGA
575 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGA
*
11580 TTTGTT
640 ATTGTT
* * * * * * * *
11586 TCTCTCTTAGTTCTTGGATGAACCTCCGGAGTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCG
1 TCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * ** *
11651 GTTCCCTGAAGTGTATTACATATAAAAGATCCACTTC-ATCGAGCAAT-TTTTGAACATTCCATT
66 GTT-CCTTAA-AGTATT-C--A-AGATGATCCA-TTCTTTCGAGCAATATTCCGAACATTCCATG
* * * * * *
11714 CTCCGA-AAATCGAATCTTTTGGTTTAAATAGTTTTTCATTTTGTAAACATCTTTTGTTCTTTGA
124 CT-CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
* ** * **
11778 ATTAAAAACTTATTTATGTGA-AA--GTTGTCTCTCTTGGTTCTCGGACGAACTACCAAACTTGT
188 ATTAAAAACTTATTTACGTGAGAATTGTT-TCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGT
* * * * ** *
11840 AAAACTTTTACGAGTTATTTTATAACTTCGATTCCTTAAAGTATTCAAGACCATCTGTTTCTAT-
252 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT-TC
* * * *
11904 GAGCAATTTTCCAAACATTCCATGCTC-GAGAAATTGCATCTTTTGGTCTAAATAG-TTGTCATT
316 GAGCAATTTTTCGAACATTCCATGCTCGGA-AAATCGCATC-ATTGGTCTAAATAGTTTGTCATT
* * * ** * *
11967 TTGAAAAATAAGTTTTGGTCTTCAAACTAAAAAACTTATTTACGTGAGAATTGTTTATC-CTTTG
379 TTG-TAAACAACTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTG
** * ** * * ** *
12031 GTTCTTATACGAACTTCTTAACTAGTCAAGCGTTTTATGAGTTCTTTTATAACTTTGGTTCCTTA
441 GTTCTTGGACGAACCTCCGAACTTGTCAAAC-TTTTACAAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * * * * *
12096 AAGTATTCAAGACGATTCATTCCTTCAATCAATATTCCAACATTCCATGCTCGGGAAATAGCATC
505 AAGTATTTAAGATGATCCATT-CTTCGAGCAATTTTCGAACATTCCATGCTCGAGAAATTGCATC
* * * *
12161 ATTCGGTCTAAATAATTTGTCATTTTGCAAACAACTTTTTGGTCCTTGAATTAAAAA-TATATTT
569 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACT-TATTT
* * *
12225 ATATGAGAAATATT
632 ATGTGAGAATTGTT
* * * * * * * *
12239 TCTCTTTTGATTCTTAGACAAACTTCTGAACTTGTCAAGCTTTTACTATTTGTTCTATGATAACT
1 TCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGA---GTTCTTTTATAACT
* ** * * *
12304 TCGGTTCCTTAAACTATAAAAAGATGATCCAATCCTTCGAGCAATATTTCGAACATTCCATGCTC
63 TCGGTTCCTTAAAGTAT-TCAAGATGATCCATTCTTTCGAGCAATATTCCGAACATTCCATGCTC
* * * * * **
12369 GGGAAATCGCATCATTCGGTCAAAATAGTTTGCCATTTTGTAAAAAAACTTTTGGTCACTGAATT
127 GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATT
* * * * **
12434 AAATACTTATTTATGTGTA-AATTGTTTCTCTCTTGGTTCTTGGACGAACTT-TCGAACTAGGAA
191 AAAAACTTATTTACGTG-AGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCT-GAACTTGTCA
* * * * *
12497 AACTTTTACTATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCAATTTCTTCGAG
254 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * *
12562 CAATTTTGCGAACATTCCATGCTC-GAGAAATTGCATCACTTGGTCTATATAGTTTGTCATTTTG
319 CAATTTTTCGAACATTCCATGCTCGGA-AAATCGCATCA-TTGGTCTAAATAGTTTGTCATTTTG
* *
12626 TAAACAACTTTTGGTCTTTGAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTT
382 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * * * *
12691 AGACGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATGACATT-GGTTCCTTAAAGTAT
447 GGACGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTAT
* * * * * * * *
12755 TCAAGGTGATCCATTCTTTCAAGCAATATTCCAAACATTCCAGGCTCGAGAAATCGCATCATTCG
511 TTAAGATGATCCATTC-TTCGAGCAAT-TTTCGAACATTCCATGCTCGAGAAATTGCATCATTTG
* * **
12820 GTCTAAATATTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTGCGTGAG
574 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAG
12885 AATTGTT
639 AATTGTT
* * * * *
12892 TCTCTCTTAGTTCTTGGACGAACTTCGGAACTTGTCAAACTTTTACTAGTTCTTTTACAACTTAG
1 TCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * * * *
12957 GTTCCTTAAAGGATTCTATG-CGATCCATTCCTTT-TA-CAAATTTTTCGAACATTCAATGTTCG
66 GTTCCTTAAAGTATTC-AAGATGATCCATT-CTTTCGAGC-AATATTCCGAACATTCCATGCTCG
* * * *
13019 AAAAATCGCATCATTTGATCTAAATAGTCTGTCATTTTGTGAACAACTTTTGGTCTTTGAATTAA
128 AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * * * * *
13084 AAACTTATTGACGTGCGATTTGTTTCTCTCTTGGTTC-TGGACGAACCTCCGGACTTGTCAAACT
193 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACT
* * * * * * * *
13148 TTTACAAGTTCTTTTA-ATACTTTGGTTCCTTGAAGTGTATTATATATAAATGATCCCCTT-CAT
258 TTTACGAGTTCTTTTATA-ACTTCGGTTCCTT-AA-AGTA-T-T-CA-AGACGAT-CCATTCCTT
* * * * * *
13211 CGAGCAA-TTTTCAAACATTCCATTCTCCGAAAATCGAATCTTTTTGGTTTAAATAGTTTGTCAT
315 CGAGCAATTTTTCGAACATTCCATGCTCGGAAAATCGCATC--ATTGGTCTAAATAGTTTGTCAT
* * * *
13275 TTTGTTAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAAAATTGTCTCTCTCTTGGT
378 TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-
* * * *
13340 TTGTTGGACGAA-CTACCGAACTTGTAAAACTTTTACAAGTTATTTTATAACTTCGATTCCTTAA
442 TTCTTGGACGAACCT-CCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAA
* ** *
13404 AGTATTCAAGACCATCCATTTCTAT-GAGCAATTTTCCAAACATTCCATGCTCGAGAAATTGCAT
506 AGTATTTAAGATGATCCA-TTCT-TCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATTGCAT
* * * * ** * * *
13468 CTTTTGGTCTAAATAGTTTGTCATTCTGAAAACCAAGTTTTGGTCTTCAAACTAAAACCATATTT
568 CATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTT
* *
13533 ACGAGAGAATTGTT
632 ATGTGAGAATTGTT
* * * *
13547 TCTC-CTTTGGTTCTTAGACGAACTTCTGAACTAGTCAAGCTTTTACGAGTTCTTTTATAACTTT
1 TCTCTC-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * *
13611 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGATCAATATTCCGAACATTCCATGCTCGGG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAATATTCCGAACATTCCATGCTCGAG
* * * *
13676 AAATAGCATCATTCGGTCTAAATAGTTTGTTATTTTGCAAACAACTTTTTGGTCTTTGAATTAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAA
* * * * * * *
13741 AA-TATGTTTAAGTGAGAATTATTTCTCTTTTGATTCTTAGACAAACTTCTGAACTTGTCAAGCT
194 AACT-TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACT
* * * *
13805 TTTACTATTTCTTTTATAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAGC
258 TTTACGAGTTC-TTT-T-ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * * *
13870 AATATTTCGAACATTCCATGCTCGGGAAAGCACATCATTCGATCAAAATAGTTCGCCATTTT-TC
320 AATTTTTCGAACATTCCATGCTCGGAAAATCGCATCATT-GGTCTAAATAGTTTGTCATTTTGT-
* * * * *
13934 ACAAAAACTTTTGGTCATTGACTTAAATACTTATTTATGTGTA-AATTGTTTCTCTCTTGGTTCT
383 A-AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AGAATTGTTTCTCTCTTGGTTCT
* * ** * * * * * * * *
13998 TGGATGAACTTTTGAACTAG-GAAAGCTTCTACTATTTCTGTTATAA-TTATGGTTCCTTAGAGT
446 TGGACGAACCTCCGAACTTGTCAAA-CTTTTACAAGTTCTTTTATAACTT-CGGTTCCTTAAAGT
* * * * * * * * *
14061 ATTCAAGATGATCAATTTGTTCGTGCAATATTCCGAACATTCAATGCTTGGGAAATCGCATCATT
509 ATTTAAGATGATCCA-TTCTTCGAGCAAT-TTTCGAACATTCCATGCTCGAGAAATTGCATCATT
* * * *
14126 CGGTCCAAATAGTTTGTCATTTCGTAAAAAAAACTTTTGGTCTTTGAATTAAAAACTTATTTATG
572 TGGTCTAAATAGTTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATG
14191 TGTA-AATTGTT
635 TG-AGAATTGTT
* * * * * ** * *
14202 TCACTCTTGATTCTTGGACGTACTTCCGAACTCGGAAAACTTTTACTA-TTTTTGTTATAACTTC
1 TCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT-TTATAACTTC
* * *
14266 AGTTCCTTAAAGTATTCAAGATGATCCATT-TCTTCGAGCAATTTTGCGAACATTCCATGCTCGA
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCT-TTCGAGCAATATTCCGAACATTCCATGCTCGA
* * *
14330 GAAATTGCATCACTTGGTCTATATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
* * * * * *
14395 AACTTATTTGCGTGAGAATCGTCTCTCTCTTAGTTCTTGGATGAACTTTCGAACTTGTCAAACTT
194 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT--A-G-A----CGAACTTCT-GAACTT
* * * * *
14460 GTCAAACTTTTACGAGTTCTTTTACAACTTAGGTTCCTTAAAGCATTCTATACGATCCATTCCTT
250 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * * * *
14525 CTA-CAAATTTTTCGAACA-TCCAATGTTCGTAAAATCGCATAATTTGATCTAAATAGTTTGTCA
315 CGAGC-AATTTTTCGAACATTCC-ATGCTCGGAAAATCGCATCA-TTGGTCTAAATAGTTTGTCA
** * * * *
14588 TTTTGCGAACAACTTTTGGTCTTTGAATTAAAAACTTATTGACGTGGGATTTGTTTCTCACTTGG
377 TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
* *
14653 TTCTTGGATGAACCTCC-AGACTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCGGTTCCTTGA
442 TTCTTGGACGAACCTCCGA-ACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTT-A
* * * * * *
14717 AGTGTATTATATATAAATGATCCACTTCATCGAGCAATTTTTGAGCATTCCATTCTCCG-GAAAT
505 A-AGTA-T-T-TA-AGATGATCCA-TTCTTCGAGCAATTTTCGAACATTCCATGCT-CGAGAAAT
* * * * *
14781 CGAATCTTTTGGTTTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTT
563 TGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * *
14846 ATTTATGTGAAAATTATC
628 ATTTATGTGAGAATTGTT
* * * * *
14864 TCTCTCTTGGTTTTTTGGACGAACTACCGAACTTGTAAAACTTTTACGAGTTATTTTATAACTTC
1 TCTCTCTTGG-TTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
** * * * *
14929 GGTTCCTTAAAGTATTCAAGACCATCCGTT-TTTACGAGCAATTTTCCAAACTTTCCATGCTCGA
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCTTT-CGAGCAATATTCCGAACATTCCATGCTCGA
* * * * * ** *
14993 GAAATTGCATCTTTTGGTATAAATAGTTTGTCATTTTGAAAACCAAGTTTTGGTCTTCAAACTAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAA
* * * * **
15058 AAACATATTTACATGAGAATTGTTTCTC-CTTTGGTTCTTAAACGAACTTCTTAACTTGTCACTC
193 AAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTAGACGAACTTCTGAACTTGTCAAAC
** ***** * * * * **
15122 TTTTACGAGTTCTTTTATAA-TTTTGTAAAAAAACATTTGGTCATTGAATTA-AATAC-TTATTT
257 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-A----GT-ATTCAA-GACGATCCATTCCTT
* * * * *** ** * * * ** * * *
15184 ATGTGTAAACTGTTTCTCTC-TT-GGTTCTTGGACGAACTTTCA-AACTAGG---AAA-ACTTT-
315 -CGAG-CAA-TTTTTCGAACATTCCATGCTCGGA--AAATCGCATCA-TTGGTCTAAATAGTTTG
* * * * * * * *
15241 TACTATTTCTG-ATATAAC-TTCGGTTCCTTAAAGTATTCAAGA-TGGTCCATTT-CTTCGAGCA
374 T-C-ATTT-TGTAAACAACTTTTGG-T-CTT--TGAATTAAAAACT--T--ATTTACGT-GAG-A
* *** ** * * ** * *
15302 ATT-TTGCGAACATTCCATGC-TCGA-GAAATTGC-ATCACTTGGTCTAAA-TAGTTTGTC-A-T
426 ATTGTTTCTCTC-TT-GGTTCTTGGACGAACCTCCGA--ACTT-GTC-AAACT--TTT-ACAAGT
* * * ** * *
15360 T-TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTGTC-TTG
482 TCTT-T-TATAAC-TTCGG---TT-CCTT--AAA-GTATTTA----AG-A-TG-ATC---CATT-
* * * * * ** *** **
15423 GTTCTTAGACGAA-CTTCAGAACTTTTCAAGTTTTTACGAGTTCTTTTATAACA-TTGGTTCCCT
526 CTTC-GAG-C-AATTTTC-GAAC-ATTCCA--TGCT-CGAGAAATTGCAT--CATTTGG-T--CT
* * ***** **
15486 AAAGTA-TTCAAGACGATCCATTCTT-TCAAGCAA-TATTCCAAATATTCCATGCTAGAGAAA-T
578 AAA-TAGTT-----TG-T-CATT-TTGT-AAACAACT-TTTGGTCT-TTGAAT--TA-A-AAACT
* * *
15547 TGCATCTTTTGGTCTA-AATAGTT
627 T--AT-TTAT-GT-GAGAATTGTT
* * * * * *** * ** * *
15570 TGTCATTTTGAAAACCAAGTT-TTGGTCTTCAAATTAAAAACTTAT-TTA-TGTGA-GAATTGTT
1 TCTC-TCTTG--------GTTCTTGGAC--GAACTTCTGAACTTGTCAAACTTTTACG-A--G-T
* * * ** * * *
15631 TCTCCTTTGGT-TCTTAGACG-AACTTCAAAACTAGTCAAGCTTTTATGAGTTCTTTTATAAATC
51 TCT--TTT-ATAACTTCG--GTTCCTT--AAAGTATTCAAG-----ATGA--TC---CAT---TC
**** * * * * * * * *
15694 TGGTTCCTTAAAGT-TTTCAAGACAATCTATTCCTTCGATCAATATTTCG-AACATTCCATGCTC
96 T--TTCGAGCAA-TATTCCGA-ACATTCCA-TGC-TCGA-GAA-A--TCGCATCATT---TGGTC
*
15757 GGGAAATAGCATCATTCGGTCTAAATAGTTTGTCGTTTTGCAAACAACTTTTTGGTCTTTGAATT
148 --TAAATAG--T--TT--GTC-----A-TTT-T-G---T--AAACAAC-TTTTGGTCTTTGAATT
** * * * *
15822 AAAAA-TATATTTATATGAGAATTAG-TTCTCTTTTGATTCTTAGACAAACTTTTGAACTTGTCA
191 AAAAACT-TATTTACGTGAGAATT-GTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCA
** * * * *
15885 GGCTTTTACTATTTCTTTTATAATAACTTCGGTTCCTTAAAGTATTCAAGATGATCAATTCCTTC
254 AACTTTTACGAGTTC-TTT-T-ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * *
15950 AAGCAATATTCCGAACATTCCATGCTC-GAGAAATCGCATCATTCGGTCAAAATAGTTTGCCATT
316 GAGCAATTTTTCGAACATTCCATGCTCGGA-AAATCGCATCATT-GGTCTAAATAGTTTGTCATT
* ** * * *
16014 TTGTAAAAAAACTTTTGGTCACTGAATTAAATACTTATTTATGTGTA-AATTGTTTCGCTCTTGG
379 TTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AGAATTGTTTCTCTCTTGG
* * * ** * * *
16078 TTCTTGGACGAACTTTCGAACTAGGAAAACTTTTACTATTTCTGTTATAACTTCGGTTCCTTAAA
442 TTCTTGGACGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * *
16143 TTATTCAAGATGATCCATTTCTTCGAGCAAATTTGCGAGCATTCCATGCTCGAGAAATTGCATCA
507 GTATTTAAGATGATCCA-TTCTTCGAGC-AATTTTCGAACATTCCATGCTCGAGAAATTGCATCA
* *
16208 CTTGGTCTAAATAGTTTGTCATTTTGTAAACAGA-TTTTGGTCTTTGAATTAAAAACTTATTTAC
570 TTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTGGTCTTTGAATTAAAAACTTATTTAT
16272 GTGAGAATTGTT
634 GTGAGAATTGTT
* * * *
16284 TCTCTCTTGGTTCTTAGACGAACTTCAGAACTTTTCAAGCTTTTACGAGTTCTTTTATAACATT-
1 TCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTC
* *
16348 GGTTCCTTAAAGTATTCAATATGATCCATTCTTTCAAGCAATATTCC-AGACATTCCATGCTCGA
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAATATTCCGA-ACATTCCATGCTCGA
* * * ** *
16412 GAAATCGCATCATTCGGTTTAAATA-TTTAGTTATTTTGTAAACAACTTTCAGTCTTTTAATTAA
129 GAAATCGCATCATTTGGTCTAAATAGTTT-GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
** * ** *
16476 AAACTTATTTACGT--G---TGTTTCTCTCTTAATTCTTTGATAAACTTCCGAACTTGTCAAACT
193 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACT
* * * * * *
16536 TTTATGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCTATG-CGATCCATTCCATCTA-CAA
258 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTCGAGCAA
* * * * * *
16599 TTTTTTCGAACATTCAATGTTCGAAAAATCGCATCATTTGATTTAAATAGTTTGTTATTTTGTAA
322 -TTTTTCGAACATTCCATGCTCGGAAAATCGCATCA-TTGGTCTAAATAGTTTGTCATTTTGTAA
* * * *
16664 ACAACTTTTGGTCCTTGAATTAAAAACTTATTGACGTGGGATTTGTTTCTCTCTTGGTTCTTGGA
385 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
16729 CGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCGGTTCCTTGAAGTGTATTA
450 CGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTT-AA-AGTATT-
* * * *** *
16794 TAA-ATGATCCACTTCATCGAGCAATTTTTGAACATTCCATTCTTCGA-AAATCAAATCGTTTGG
512 TAAGATGATCCA-TTCTTCGAGCAATTTTCGAACATTCCATGC-TCGAGAAATTGCATCATTT-G
*
16857 GT-TAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAAAACTTATTTATGTGA
574 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAAACTTATTTATGTGA
* * *
16921 AAATTATC
638 GAATTGTT
* * * *
16929 TCTCTCTTGGTTCTTGGACGAACTACGGAACTTGTAAAACTTTTACGAGTTATTTTATAACTTCG
1 TCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* ** * * * *
16994 GCTCCTTAAAGTATTCAAGACCATCCATT-TCTACGACCAATTTTCC-AAGCATTCCATGCTCCA
66 GTTCCTTAAAGTATTCAAGATGATCCATTCT-TTCGAGCAATATTCCGAA-CATTCCATGCTCGA
* * * * * ** *
17057 GAAATTGCATCTTTTGGTCTAAATAGTTTGTCATTCTGAAAACCAAGTTTTGGTCTTCAAACTAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAA
* * * * *
17122 AAACATATTTACGTGAGAATTGTTTCTC-CTTTGGTTTTTAAACGAACTTCTGAACTAGTCAAGC
193 AAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTAGACGAACTTCTGAACTTGTCAAAC
* *
17186 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAA
257 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * *
17251 TATTTCGAATATTCCATGCTCGGGAAATAGCATCATTCGGTCTAAATAG-TTGTTATTTTGCAAA
322 TTTTTCGAACATTCCATGCTCGGAAAATCGCATCATT-GGTCTAAATAGTTTGTCATTTTGTAAA
* * * * *
17315 CAACTTTTTGGTCTTTGAATTAAAAA-TATGTTTAAGTGAGAATTATTTCTCTTTTGATTCTTGG
386 CAAC-TTTTGGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * *
17379 ACAAACTTCTGAACTTGTCAAGCTTTTACTATTTCTTTTATAATAACTTCGGTTCCTTAAAGTAT
449 ACGAACCTCCGAACTTGTCAAACTTTTACAAGTTC-TTT-T-ATAACTTCGGTTCCTTAAAGTAT
* * * ** *
17444 TCAAGATGATCCAATCCTTCGAGCAATATTTCGAACATTCCATGCTCGGGAAATCACATCATTCG
511 TTAAGATGATCC-ATTCTTCGAGCAAT-TTTCGAACATTCCATGCTCGAGAAATTGCATCATTTG
* * * * * *
17509 GTCAAAATAGTTTGCCATTTTGTACAAAAACTTTTGGTCATTGACTTAAATACTTATTTATGTGT
574 GTCTAAATAGTTTGTCATTTTGTA-AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-
17574 A-AATTGTT
637 AGAATTGTT
* * * * * * * *
17582 TCTCTCTTGGTTCTTGGATGAACTTCCGAACTAG-GAAAGCTTCTACTATTTCTGTTATAACTAT
1 TCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA-CTTTTACGAGTTCTTTTATAACT-T
* * * *
17646 -GGTTCCTTAGAGTATTCAAGATGATCAATT-TCTTCGAGCAATTTTGCGAACATTCCATGCTCG
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTCT-TTCGAGCAATATTCCGAACATTCCATGCTCG
* *
17709 AGAAATTGCATCACTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTT-GTCTTTGAATTAA
128 AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * *
17772 AAACTTATTTATGTGAGAATTGATTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTTTCAAGCT
193 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACT
* * * *
17837 TTTAAGAGTTCTTTTATAACATT-GGTTCCTTAACGTATTCAAGACGATCCATTCTTTCAAGCAA
258 TTTACGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * *
17901 TATTCCAAACATTCCATGCTC-GAGAAATCGCATCATTCAGTCTAAATATTTTGTCATTTTGTAA
322 TTTTTCGAACATTCCATGCTCGGA-AAATCGCATCATT-GGTCTAAATAGTTTGTCATTTTGTAA
* * *
17965 ACAACTTTTGGTCATTGAATTAAAAACTTATTTACGTGAGAATTGATTCTCTCTTAGTTCTTGGA
385 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * ** * * *
18030 TGAACTTCCGAACTTGTCAAACTTTTATGAGTT-ATTTATAACTTAGGTTCCTTAAAGCATTCTA
450 CGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT-TA
* ** * * * * * * *
18094 TG-CCATCCATTCCATCTA-CAAATTTTTCGGACA-TCCAATGTTCGAAAAATCGCATCATTTGA
514 AGATGATCCATT-CTTCGAGC-AA-TTTTCGAACATTCC-ATGCTCGAGAAATTGCATCATTTGG
* * * * *
18156 TCTAAATAGTTTGACATTTTGTGAACAACTTTTGGTCTTTGAATTAAAAACTTATTGACGTGGGA
575 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGA
*
18221 TTTGTT
640 ATTGTT
* * * *
18227 TCTCTCTTGGTTCTTGGACGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCG
1 TCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * *
18292 GTTCCTTGAAGTGTATT-ATAAATGATCCACTTC-ATCGAGCAAT-TTTCGAACATTCCATTCTT
66 GTTCCTT-AA-AGTATTCA-AGATGATCCA-TTCTTTCGAGCAATATTCCGAACATTCCATGC-T
** * * * *
18354 CG-GAAATCAAATCTTTTGGTTTAAATAGCTTGTCATTTTGTAAACAACATTTGGTCTTTGAATT
126 CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * * *
18418 AAAAAACTTATTTATGTGAAAATTATCTCTCTCTTGGTTCTTGGACGAACTACGGAACTTGTAAA
191 -AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAA
* * * * *
18483 ACTTTTACGAGTTATTTTATAACTTCGGTTCCTTAAAGTATTCAAGACCATTCATTTCTACGAGC
255 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * *
18548 AAATTTTCCAAGCATTCCTTGCTC-CAGAAATTGCATCTTTTGGTCTAAATAGTTTGTCATTTTG
320 AATTTTTCGAA-CATTCCATGCTCGGA-AAATCGCATC-ATTGGTCTAAATAGTTTGTCATTTTG
* * ** ** * *
18612 AAAACCAAGTTTTGGTCTTCAAACAAAAAACATATTTACATGAGAATTGTTTCTC-CTTTGGTTC
382 TAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTC
* * * * * * * *
18676 TTAGACGAACTTCTGAACTAGTCAAGCTTTTACAAGTTCTTTTATAAATTTGGTTCCTTAAATTA
445 TTGGACGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * * * *
18741 TTCAAGATGATCCATTCCTTCGATCAATATTCCGAACATTCCATTCTCGGGAAATAGCATCATTC
510 TTTAAGATGATCCATT-CTTCGAGCAAT-TTTCGAACATTCCATGCTCGAGAAATTGCATCATTT
* *
18806 GGTCTAAATAGTTTGTCATTTTGCAAACAACTTTTTGGTGTTTGAATTAAAAA-TATATTTATGT
573 GGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACT-TATTTATGT
*
18870 GAAAATTAG-T
636 GAGAATT-GTT
* * * * * * *
18880 TCTCTTTTGATTCTTAGACAAACTTCTGAACTTGTCAAGA-TTTTACTATTTATTTTATAATAAC
1 TCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA-ACTTTTACGAGTT-CTTT-T-ATAAC
* * * * * *
18944 TTCGGTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAACAATATTACAAACATTCCATGCTT
62 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAATATTCCGAACATTCCATGCTC
* * * * *
19009 GGGAAATCACATCATTCGGACAAAATAGTTTG
127 GAGAAATCGCATCATTTGGTCTAAATAGTTTG
19041 CCTCTGATGG
Statistics
Matches: 7940, Mismatches: 1612, Indels: 1012
0.75 0.15 0.10
Matches are distributed among these distances:
643 106 0.01
644 154 0.02
645 294 0.04
646 202 0.03
647 174 0.02
648 246 0.03
649 244 0.03
650 745 0.09
651 844 0.11
652 619 0.08
653 1105 0.14
654 999 0.13
655 693 0.09
656 114 0.01
657 58 0.01
658 21 0.00
659 108 0.01
660 117 0.01
661 24 0.00
662 78 0.01
663 158 0.02
664 116 0.01
665 31 0.00
666 10 0.00
667 8 0.00
668 8 0.00
669 6 0.00
671 2 0.00
672 8 0.00
673 3 0.00
674 7 0.00
675 1 0.00
676 5 0.00
677 7 0.00
678 3 0.00
679 4 0.00
680 7 0.00
681 5 0.00
682 14 0.00
683 12 0.00
685 8 0.00
686 4 0.00
687 4 0.00
688 4 0.00
690 6 0.00
691 4 0.00
693 4 0.00
695 1 0.00
696 1 0.00
697 5 0.00
698 19 0.00
699 5 0.00
700 4 0.00
701 7 0.00
702 5 0.00
703 7 0.00
704 14 0.00
705 6 0.00
706 17 0.00
707 6 0.00
712 1 0.00
713 14 0.00
714 14 0.00
715 13 0.00
716 5 0.00
717 3 0.00
718 10 0.00
719 6 0.00
720 1 0.00
721 14 0.00
722 9 0.00
723 7 0.00
724 1 0.00
725 1 0.00
726 2 0.00
728 2 0.00
729 2 0.00
730 7 0.00
731 1 0.00
732 3 0.00
733 4 0.00
734 9 0.00
735 3 0.00
736 8 0.00
737 12 0.00
738 8 0.00
739 9 0.00
740 5 0.00
741 3 0.00
742 6 0.00
743 4 0.00
744 1 0.00
745 5 0.00
747 6 0.00
749 7 0.00
750 3 0.00
751 2 0.00
752 2 0.00
753 5 0.00
756 5 0.00
757 8 0.00
758 7 0.00
759 8 0.00
760 13 0.00
761 17 0.00
762 15 0.00
763 11 0.00
764 18 0.00
765 12 0.00
766 86 0.01
767 15 0.00
768 5 0.00
769 5 0.00
770 6 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (645 bp):
TCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
GTTCCTTAAAGTATTCAAGATGATCCATTCTTTCGAGCAATATTCCGAACATTCCATGCTCGAGA
AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTT
ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
TCGAACATTCCATGCTCGGAAAATCGCATCATTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACC
TCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGATGAT
CCATTCTTCGAGCAATTTTCGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTT
TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTT
Found at i:15656 original size:217 final size:216
Alignment explanation
Indices: 15141--19040 Score: 3918
Period size: 217 Copynumber: 18.0 Consensus size: 216
15131 TTCTTTTATA
* * * * *
15141 ATTTTGTAAAAAAACATTTGGTCATTGAATTAAATACTTATTTATGTGTA-AACTGTTTCTCTCT
1 ATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAATTGTTTCTCTCT
* * ** * * * **
15205 TGGTTCTTGGACGAACTT-TCAAACTAGGAAAACTTTTACTATTTCTGATATAACTTCGGTTCCT
64 TGGTTCTTGGACGAACTTCT-GAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * *
15269 TAAAGTATTCAAGATGGTCCATTTCTTCGAGCAATTTTGCGAACATTCCATGCTCGAGAAATTGC
128 TAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCGC
*
15334 ATCACTTGGTCTAAATAGTTTGTC
193 ATCATTTGGTCTAAATAGTTTGTC
* *
15358 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTGTCTTG
1 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTG
* * * * *
15423 GTTCTTAGACGAACTTCAGAACTTTTCAAGTTTTTACGAGTTCTTTTATAACATT-GGTTCCCTA
66 GTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTTA
* * * * * * *
15487 AAGTATTCAAGACGATCCATTCTTTCAAGCAATATTCCAAATATTCCATGCTAGAGAAATTGCAT
130 AAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCGCAT
*
15552 CTTTTGGTCTAAATAGTTTGTC
195 CATTTGGTCTAAATAGTTTGTC
* * **
15574 ATTTTGAAAACCAAGTTTTGGTCTTCAAATTAAAAACTTATTTATGTGAGAATTGTTTCTC-CTT
1 ATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTC-T
* ** * * *
15638 TGGTTCTTAGACGAACTTCAAAACTAGTCAAGCTTTTATGAGTTCTTTTATAA-ATCTGGTTCCT
64 TGGTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTC-GGTTCCT
* ** * * * * *
15702 TAAAGTTTTCAAGACAATCTATTCCTTCGATCAATATTTCGAACATTCCATGCTCGGGAAATAGC
128 TAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCGC
*
15767 ATCATTCGGTCTAAATAGTTTGTC
193 ATCATTTGGTCTAAATAGTTTGTC
* * * *
15791 GTTTTGCAAACAACTTTTTGGTCTTTGAATTAAAAA-TATATTTATATGAGAATTAG-TTCTCTT
1 ATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACT-TATTTATGTGAGAATT-GTTTCTCTC
* * * * * * *
15854 TTGATTCTTAGACAAACTTTTGAACTTGTCAGGCTTTTACTATTTCTTTTATAATAACTTCGGTT
63 TTGGTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTC-TTT-T-ATAACTTCGGTT
* *
15919 CCTTAAAGTATTCAAGATGATCAATTCCTTCAAGCAATATTCCGAACATTCCATGCTCGAGAAAT
125 CCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAAT
* * *
15984 CGCATCATTCGGTCAAAATAGTTTGCC
190 CGCATCATTTGGTCTAAATAGTTTGTC
* ** * *
16011 ATTTTGTAAAAAAACTTTTGGTCACTGAATTAAATACTTATTTATGTGTA-AATTGTTTCGCTCT
1 ATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAATTGTTTCTCTCT
* ** * * * *
16075 TGGTTCTTGGACGAACTT-TCGAACTAGGAAAACTTTTACTATTTCTGTTATAACTTCGGTTCCT
64 TGGTTCTTGGACGAACTTCT-GAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * *
16139 TAAATTATTCAAGATGATCCATTTCTTCGAGCAA-ATTTGCGAGCATTCCATGCTCGAGAAATTG
128 TAAAGTATTCAAGATGATCCATTCCTTCGAGCAATA-TTCCGAACATTCCATGCTCGAGAAATCG
*
16203 CATCACTTGGTCTAAATAGTTTGTC
192 CATCATTTGGTCTAAATAGTTTGTC
*
16228 ATTTTGTAAACAGA-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
1 ATTTTGTAAACA-ACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTT
* * *
16292 GGTTCTTAGACGAACTTCAGAACTTTTCAAGCTTTTACGAGTTCTTTTATAACATT-GGTTCCTT
65 GGTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTT
* * *
16356 AAAGTATTCAATATGATCCATTCTTTCAAGCAATATTCC-AGACATTCCATGCTCGAGAAATCGC
129 AAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGA-ACATTCCATGCTCGAGAAATCGC
* * *
16420 ATCATTCGGTTTAAATA-TTTAGTT
193 ATCATTTGGTCTAAATAGTTT-GTC
** * * *
16444 ATTTTGTAAACAACTTTCAGTCTTTTAATTAAAAACTTATTTACGT--G---TGTTTCTCTCTTA
1 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTG
* * ** * * * *
16504 ATTCTTTGATAAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTAGGTTCCTTAA
66 GTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * * * * * *
16569 AGCATTCTATG-CGATCCATTCCATCTA-CAATTTTTTCGAACATTCAATGTTCGAAAAATCGCA
131 AGTATTC-AAGATGATCCATTCCTTCGAGCAA-TATTCCGAACATTCCATGCTCGAGAAATCGCA
* * *
16632 TCATTTGATTTAAATAGTTTGTT
194 TCATTTGGTCTAAATAGTTTGTC
* * * * *
16655 ATTTTGTAAACAACTTTTGGTCCTTGAATTAAAAACTTATTGACGTGGGATTTGTTTCTCTCTTG
1 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTG
* * * * *
16720 GTTCTTGGACGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCGGTTCCTTGA
66 GTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-A
* * * ** *
16785 AGTGTATT-ATAAATGATCCACTT-CATCGAGCAAT-TTTTGAACATTCCATTCTTCGA-AAATC
130 A-AGTATTCA-AGATGATCCA-TTCCTTCGAGCAATATTCCGAACATTCCATGC-TCGAGAAATC
** *
16846 AAATCGTTTGGGT-TAAATAGTTTGTC
191 GCATCATTT-GGTCTAAATAGTTTGTC
* * * *
16872 ATTTTGTAAACAACATTTGGTCTTTGAATTAAAAAACTTATTTATGTGAAAATTATCTCTCTCTT
1 ATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAAACTTATTTATGTGAGAATTGTTTCTCTCTT
* * * * * *
16937 GGTTCTTGGACGAACTACGGAACTTGTAAAACTTTTACGAGTTATTTTATAACTTCGGCTCCTTA
65 GGTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
** * * * * * *
17002 AAGTATTCAAGACCATCCATTTCTACGACCAATTTTCC-AAGCATTCCATGCTCCAGAAATTGCA
130 AAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGAA-CATTCCATGCTCGAGAAATCGCA
*
17066 TCTTTTGGTCTAAATAGTTTGTC
194 TCATTTGGTCTAAATAGTTTGTC
* * * ** * * *
17089 ATTCTGAAAACCAAGTTTTGGTCTTCAAACTAAAAACATATTTACGTGAGAATTGTTTCTC-CTT
1 ATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTC-T
* ** * *
17153 TGGTTTTTAAACGAACTTCTGAACTAGTCAAGCTTTTACGAGTTCTTTTATAACTTTGGTTCCTT
64 TGGTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * * *
17218 AAAGTATTCAAGACGATCCATTCCTTCGATCAATATTTCGAATATTCCATGCTCGGGAAATAGCA
129 AAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCGCA
* *
17283 TCATTCGGTCTAAATAG-TTGTT
194 TCATTTGGTCTAAATAGTTTGTC
* * * * *
17305 ATTTTGCAAACAACTTTTTGGTCTTTGAATTAAAAA-TATGTTTAAGTGAGAATTATTTCTCTTT
1 ATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACT-TATTTATGTGAGAATTGTTTCTCTCT
* * * *
17369 TGATTCTTGGACAAACTTCTGAACTTGTCAAGCTTTTACTATTTCTTTTATAATAACTTCGGTTC
64 TGGTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTC-TTT-T-ATAACTTCGGTTC
* * *
17434 CTTAAAGTATTCAAGATGATCCAATCCTTCGAGCAATATTTCGAACATTCCATGCTCGGGAAATC
126 CTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATC
* * * *
17499 ACATCATTCGGTCAAAATAGTTTGCC
191 GCATCATTTGGTCTAAATAGTTTGTC
* * * *
17525 ATTTTGTACAAAAACTTTTGGTCATTGACTTAAATACTTATTTATGTGTA-AATTGTTTCTCTCT
1 ATTTTGTA-AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAATTGTTTCTCTCT
* * * ** * * * *
17589 TGGTTCTTGGATGAACTTCCGAACTAGGAAAGCTTCTACTATTTCTGTTATAACTAT-GGTTCCT
64 TGGTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACT-TCGGTTCCT
* * * * * *
17653 TAGAGTATTCAAGATGATCAATTTCTTCGAGCAATTTTGCGAACATTCCATGCTCGAGAAATTGC
128 TAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCGC
*
17718 ATCACTTGGTCTAAATAGTTTGTC
193 ATCATTTGGTCTAAATAGTTTGTC
*
17742 ATTTTGTAAACAAC-TTT-GTCTTTGAATTAAAAACTTATTTATGTGAGAATTGATTCTCTCTTG
1 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTG
* * *
17805 GTTCTTAGACGAACTTCTGAACTTTTCAAGCTTTTAAGAGTTCTTTTATAACATT-GGTTCCTTA
66 GTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTTA
* * * * *
17869 ACGTATTCAAGACGATCCATTCTTTCAAGCAATATTCCAAACATTCCATGCTCGAGAAATCGCAT
130 AAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCGCAT
** *
17934 CATTCAGTCTAAATATTTTGTC
195 CATTTGGTCTAAATAGTTTGTC
* * * *
17956 ATTTTGTAAACAACTTTTGGTCATTGAATTAAAAACTTATTTACGTGAGAATTGATTCTCTCTTA
1 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTG
* * * * * *
18021 GTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTATGAGTT-ATTTATAACTTAGGTTCCTTAA
66 GTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * * * * *
18085 AGCATTC--TATGCCATCCATTCCATCTA-CAAATTTTTCGGACA-TCCAATGTTCGAAAAATCG
131 AGTATTCAAGATG--ATCCATTCCTTCGAGC-AATATTCCGAACATTCC-ATGCTCGAGAAATCG
* *
18146 CATCATTTGATCTAAATAGTTTGAC
192 CATCATTTGGTCTAAATAGTTTGTC
* * * * *
18171 ATTTTGTGAACAACTTTTGGTCTTTGAATTAAAAACTTATTGACGTGGGATTTGTTTCTCTCTTG
1 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTG
* * * * *
18236 GTTCTTGGACGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCGGTTCCTTGA
66 GTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-A
* * * * *
18301 AGTGTATT-ATAAATGATCCACTT-CATCGAGCAAT-TTTCGAACATTCCATTCTTCG-GAAATC
130 A-AGTATTCA-AGATGATCCA-TTCCTTCGAGCAATATTCCGAACATTCCATGC-TCGAGAAATC
** * * *
18362 AAATCTTTTGGTTTAAATAGCTTGTC
191 GCATCATTTGGTCTAAATAGTTTGTC
* * * *
18388 ATTTTGTAAACAACATTTGGTCTTTGAATTAAAAAACTTATTTATGTGAAAATTATCTCTCTCTT
1 ATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAAACTTATTTATGTGAGAATTGTTTCTCTCTT
* * * * *
18453 GGTTCTTGGACGAACTACGGAACTTGTAAAACTTTTACGAGTTATTTTATAACTTCGGTTCCTTA
65 GGTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
** * * * * * * *
18518 AAGTATTCAAGACCATTCATTTCTACGAGCAAATTTTCC-AAGCATTCCTTGCTCCAGAAATTGC
130 AAGTATTCAAGATGATCCATTCCTTCGAGC-AATATTCCGAA-CATTCCATGCTCGAGAAATCGC
*
18582 ATCTTTTGGTCTAAATAGTTTGTC
193 ATCATTTGGTCTAAATAGTTTGTC
* * ** ** * **
18606 ATTTTGAAAACCAAGTTTTGGTCTTCAAACAAAAAACATATTTACATGAGAATTGTTTCTC-CTT
1 ATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTC-T
* * * * *
18670 TGGTTCTTAGACGAACTTCTGAACTAGTCAAGCTTTTACAAGTTCTTTTATAAATTTGGTTCCTT
64 TGGTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * *
18735 AAATTATTCAAGATGATCCATTCCTTCGATCAATATTCCGAACATTCCATTCTCGGGAAATAGCA
129 AAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCGCA
*
18800 TCATTCGGTCTAAATAGTTTGTC
194 TCATTTGGTCTAAATAGTTTGTC
* * * *
18823 ATTTTGCAAACAACTTTTTGGTGTTTGAATTAAAAA-TATATTTATGTGAAAATTAG-TTCTCTT
1 ATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACT-TATTTATGTGAGAATT-GTTTCTCTC
* * * * * * *
18886 TTGATTCTTAGACAAACTTCTGAACTTGTCAAGATTTTACTATTTATTTTATAATAACTTCGGTT
63 TTGGTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTT-CTTT-T-ATAACTTCGGTT
* * * * * *
18951 CCTTAAAGTATTCAAGATGATCCAATCCTTCGAACAATATTACAAACATTCCATGCTTGGGAAAT
125 CCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAAT
* * * *
19016 CACATCATTCGGACAAAATAGTTTG
190 CGCATCATTTGGTCTAAATAGTTTG
19041 CCTCTGATGG
Statistics
Matches: 3058, Mismatches: 521, Indels: 205
0.81 0.14 0.05
Matches are distributed among these distances:
210 5 0.00
211 167 0.05
212 5 0.00
213 4 0.00
214 183 0.06
215 194 0.06
216 696 0.23
217 930 0.30
218 394 0.13
219 120 0.04
220 343 0.11
221 17 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTG
GTTCTTGGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
AGTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCGCATC
ATTTGGTCTAAATAGTTTGTC
Found at i:20427 original size:38 final size:38
Alignment explanation
Indices: 20385--20466 Score: 94
Period size: 39 Copynumber: 2.1 Consensus size: 38
20375 ATTAAATAGG
*
20385 GTTTTAATGCGTCTTAAGTTTGACACATA-TTAATAGTT
1 GTTTTAATGCGACTT-AGTTTGACACATATTTAATAGTT
* * **
20423 GTTTTTAATGTGACTTATTTTGTTACATATTTAATAGTT
1 G-TTTTAATGCGACTTAGTTTGACACATATTTAATAGTT
20462 GTTTT
1 GTTTT
20467 TAAGGTGTCT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
38 15 0.41
39 22 0.59
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52
Consensus pattern (38 bp):
GTTTTAATGCGACTTAGTTTGACACATATTTAATAGTT
Found at i:20573 original size:32 final size:32
Alignment explanation
Indices: 20530--20592 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
20520 AGCCGAAATT
* *
20530 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATATATTTCAGGTACATGC
* *
20562 AATTAGTTGATTAATATATTTTAGGTACATG
1 AATTAGCTGATTAATATATTTCAGGTACATG
20593 TATGGATGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (32 bp):
AATTAGCTGATTAATATATTTCAGGTACATGC
Done.