genome.fa.s12360.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012360.1 Kokia drynarioides strain JFW-HI SEQ_127364, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24212

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572--759	97	1.9	96	85	9	258	37	14	17	29	1.90
1024--1362	58	5.8	59	77	7	257	34	3	27	34	1.75
1024--1371	89	3.9	88	75	12	257	34	4	27	34	1.76
1024--1375	118	3.0	117	78	8	349	34	3	27	33	1.76
1141--1375	29	7.9	29	78	8	226	34	2	27	35	1.71
2452--2534	3	27.0	3	89	4	112	36	1	0	62	1.03
3282--3374	17	5.4	17	81	8	107	52	2	3	41	1.29
3282--3374	35	2.7	35	84	3	116	52	2	3	41	1.29
5155--5237	18	4.5	19	69	23	70	46	4	1	46	1.31
6532--6569	21	2.0	20	85	15	53	28	0	2	68	1.03
6608--6667	21	2.8	22	87	2	86	20	8	3	68	1.30
6606--6667	22	2.9	21	85	4	88	20	8	3	67	1.31
6795--6831	3	12.7	3	94	5	67	32	0	0	67	0.91
8483--8529	14	3.4	14	84	0	58	51	10	0	38	1.37
8474--8525	20	2.6	20	87	6	70	50	11	1	36	1.50
8487--8527	2	20.5	2	84	0	55	51	7	0	41	1.30
8487--8527	12	3.4	12	89	0	64	51	7	0	41	1.30
8657--8694	19	2.0	20	89	5	60	65	7	5	21	1.38
21082--21248	85	2.0	85	83	2	210	35	14	23	25	1.93
20943--21734	209	3.8	209	93	0	1325	38	16	20	24	1.92
21500--21827	85	4.0	85	69	12	223	37	16	21	25	1.93
21554--21895	161	2.1	161	95	0	612	38	17	20	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21340--22207	370	2.3	370	92	0	1441	38	17	20	23	1.93
21710--22105	210	1.9	209	91	0	657	37	18	20	22	1.94
22954--22996	14	3.2	14	83	12	63	51	11	0	37	1.39
22945--22994	18	2.6	20	84	12	61	50	14	2	34	1.54
22960--22994	6	5.8	6	96	0	61	51	11	0	37	1.38
23128--23165	19	2.0	20	89	5	60	65	7	5	21	1.38

Tables:   1

The End!