Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012374.1 Kokia drynarioides strain JFW-HI SEQ_127378, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 750

Length: 1251
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38


Found at i:496 original size:31 final size:31

Alignment explanation


    Indices: 461--520  Score: 111
    Period size: 31  Copynumber: 1.9  Consensus size: 31

        451 AAGTATCTCA

                                           
        461 ATTTGATTTGATTCCAATCAAATTGATTTTG
          1 ATTTGATTTGATTCCAATCAAATTGATTTTG

                          *              
        492 ATTTGATTTGATTCTAATCAAATTGATTT
          1 ATTTGATTTGATTCCAATCAAATTGATTT

        521 AAATGTCATT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   28  1.00

ACGTcount: A:0.30, C:0.08, G:0.12, T:0.50


Consensus pattern (31 bp):   
ATTTGATTTGATTCCAATCAAATTGATTTTG
Done.