genome.fa.s12378.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012378.1 Kokia drynarioides strain JFW-HI SEQ_127382, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74879

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4321--4381	30	2.0	30	84	6	79	24	8	4	62	1.43
5240--5421	70	2.8	61	75	15	184	37	16	18	26	1.92
5434--5480	24	2.0	24	91	0	76	38	21	4	36	1.73
5662--5854	60	3.3	57	81	7	208	35	16	15	33	1.90
8537--8603	16	4.4	15	74	17	50	35	0	1	62	1.04
9559--9594	17	2.2	17	90	5	56	22	13	2	61	1.46
10135--10181	25	1.9	24	95	4	85	78	0	21	0	0.75
14460--14523	31	2.1	31	90	0	101	21	25	25	28	1.99
17626--17821	58	3.4	56	78	8	137	37	4	25	33	1.75
17720--17905	29	6.4	29	76	14	134	39	2	24	33	1.69
17720--17905	56	3.2	56	81	7	180	39	2	24	33	1.69
17713--17921	59	3.6	56	80	8	206	39	3	22	33	1.71
17713--17943	30	7.9	30	78	10	194	38	3	23	35	1.70
19084--19188	3	34.0	3	84	5	138	34	0	1	62	1.12
20013--20897	209	4.2	209	90	0	1200	22	22	18	36	1.95
21694--21785	47	2.0	47	89	4	141	15	18	17	48	1.81
32121--32441	29	11.0	29	78	10	273	37	3	25	34	1.73
32158--32446	116	2.5	117	82	7	306	38	3	24	34	1.71
33622--33674	3	17.0	3	76	7	52	33	1	3	60	1.26
33623--33674	22	2.4	22	83	6	70	34	1	3	59	1.27
33622--33673	13	3.8	13	80	9	59	32	1	3	61	1.25
34329--34357	12	2.3	13	94	5	51	27	3	20	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34394--34509	6	20.7	6	72	19	90	55	4	0	40	1.20
34402--34509	17	6.4	17	81	5	121	54	4	0	40	1.21
36974--37009	12	2.8	14	80	20	51	22	0	5	72	1.05
58820--58862	3	14.7	3	81	13	54	4	27	0	67	1.10
58820--58861	14	2.9	14	89	3	57	4	28	0	66	1.12
65832--65864	17	1.9	17	93	0	57	36	15	18	30	1.91
66029--66135	40	2.7	40	79	5	117	26	16	20	36	1.94
66662--66932	55	5.0	52	81	10	196	28	35	16	19	1.93
66719--66932	55	3.9	55	82	10	215	27	35	17	20	1.95
68128--68412	24	11.9	24	76	4	254	34	17	25	21	1.95
71339--71372	17	2.0	17	100	0	68	29	29	11	29	1.92
72408--72451	18	2.5	18	85	3	54	50	0	9	40	1.34

Tables:   1

The End!