Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012383.1 Kokia drynarioides strain JFW-HI SEQ_127387, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67693
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 65 characters in sequence are not A, C, G, or T
Found at i:3373 original size:48 final size:48
Alignment explanation
Indices: 3321--3457 Score: 129
Period size: 48 Copynumber: 3.1 Consensus size: 48
3311 ATAAAAAATT
*
3321 ATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGATAATAC
1 ATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGAAAATAC
* * *
3369 ATTATT-TACTA-AA---TT-T-AAAT-AT-T-TTGA--TAAAAAT-T
1 ATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGAAAATAC
* *
3404 ATTATTATATTACATTTTTTATCAAATAATGTGTTGATTTGACAATAC
1 ATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGAAAATAC
3452 ATTATT
1 ATTATT
3458 TACTAAATTT
Statistics
Matches: 67, Mismatches: 9, Indels: 26
0.66 0.09 0.25
Matches are distributed among these distances:
35 6 0.09
36 9 0.13
37 1 0.01
38 4 0.06
39 1 0.01
40 4 0.06
41 5 0.07
42 5 0.07
43 4 0.06
44 1 0.01
45 4 0.06
46 2 0.03
47 9 0.13
48 12 0.18
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.49
Consensus pattern (48 bp):
ATTATTATATTACAATTTTTATCAAATAATGTGTTGATTTGAAAATAC
Found at i:3444 original size:83 final size:83
Alignment explanation
Indices: 3268--3680 Score: 675
Period size: 83 Copynumber: 5.0 Consensus size: 83
3258 TATTACAATA
* * **
3268 TGTTGATTTGATAATAGATTATTTACTAAATTTAAATATTTAAATAAAAAATTATTATTATATTA
1 TGTTGATTTGACAATACATTATTTACTAAATTTAAATATTTTGAT-AAAAATTATTATTATATTA
3333 CAATTTTTATCAAATAATG
65 CAATTTTTATCAAATAATG
*
3352 TGTTGATTTGATAATACATTATTTACTAAATTTAAATATTTTGATAAAAATTATTATTATATTAC
1 TGTTGATTTGACAATACATTATTTACTAAATTTAAATATTTTGATAAAAATTATTATTATATTAC
*
3417 ATTTTTTATCAAATAATG
66 AATTTTTATCAAATAATG
**
3435 TGTTGATTTGACAATACATTATTTACTAAATTTAAATATTTAAATAAAAATTTATTATTATATTA
1 TGTTGATTTGACAATACATTATTTACTAAATTTAAATATTTTGATAAAAA-TTATTATTATATTA
*
3500 CAATTTTTATCAAATATTG
65 CAATTTTTATCAAATAATG
* *
3519 TGTTGATTTGACAATATATTATTTACTAAATTTAAATATTTTGATAAAAATTATTAATATATTAC
1 TGTTGATTTGACAATACATTATTTACTAAATTTAAATATTTTGATAAAAATTATTATTATATTAC
*
3584 AATTTTT-TTAAATAATG
66 AATTTTTATCAAATAATG
*
3601 TGTTGATTTGAAAATACATTATTTACTAAATTTAAATATTTTGATAAAAATTTATTATTATATTA
1 TGTTGATTTGACAATACATTATTTACTAAATTTAAATATTTTGATAAAAA-TTATTATTATATTA
3666 CAATTTTTATCAAAT
65 CAATTTTTATCAAAT
3681 TTTAAATTTA
Statistics
Matches: 307, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
82 56 0.18
83 126 0.41
84 125 0.41
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.48
Consensus pattern (83 bp):
TGTTGATTTGACAATACATTATTTACTAAATTTAAATATTTTGATAAAAATTATTATTATATTAC
AATTTTTATCAAATAATG
Found at i:3460 original size:167 final size:166
Alignment explanation
Indices: 3268--3680 Score: 711
Period size: 167 Copynumber: 2.5 Consensus size: 166
3258 TATTACAATA
* * *
3268 TGTTGATTTGATAATAGATTATTTACTAAATTTAAATATTTAAATAAAAAATTATTATTATATTA
1 TGTTGATTTGAAAATACATTATTTACTAAATTTAAATATTTAAATAAAAATTTATTATTATATTA
*
3333 CAATTTTTATCAAATAATGTGTTGATTTGATAATACATTATTTACTAAATTTAAATATTTTGATA
66 CAATTTTTATCAAATAATGTGTTGATTTGACAATACATTATTTACTAAATTTAAATATTTTGATA
*
3398 AAAATTATTATTATATTAC-ATTTTTTATCAAATAATG
131 AAAATTATTAATATATTACAATTTTTT-T-AAATAATG
*
3435 TGTTGATTTGACAATACATTATTTACTAAATTTAAATATTTAAATAAAAATTTATTATTATATTA
1 TGTTGATTTGAAAATACATTATTTACTAAATTTAAATATTTAAATAAAAATTTATTATTATATTA
* *
3500 CAATTTTTATCAAATATTGTGTTGATTTGACAATATATTATTTACTAAATTTAAATATTTTGATA
66 CAATTTTTATCAAATAATGTGTTGATTTGACAATACATTATTTACTAAATTTAAATATTTTGATA
3565 AAAATTATTAATATATTACAATTTTTTTAAATAATG
131 AAAATTATTAATATATTACAATTTTTTTAAATAATG
**
3601 TGTTGATTTGAAAATACATTATTTACTAAATTTAAATATTTTGATAAAAATTTATTATTATATTA
1 TGTTGATTTGAAAATACATTATTTACTAAATTTAAATATTTAAATAAAAATTTATTATTATATTA
3666 CAATTTTTATCAAAT
66 CAATTTTTATCAAAT
3681 TTTAAATTTA
Statistics
Matches: 235, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
166 85 0.36
167 143 0.61
168 7 0.03
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.48
Consensus pattern (166 bp):
TGTTGATTTGAAAATACATTATTTACTAAATTTAAATATTTAAATAAAAATTTATTATTATATTA
CAATTTTTATCAAATAATGTGTTGATTTGACAATACATTATTTACTAAATTTAAATATTTTGATA
AAAATTATTAATATATTACAATTTTTTTAAATAATG
Found at i:3804 original size:22 final size:21
Alignment explanation
Indices: 3773--3830 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
3763 TGGACCACCC
3773 AAATTTCAGCTCACATAAACCG
1 AAATTTCAGCTCACA-AAACCG
* *
3795 AAATTCCAGCTCAGCAAAATCG
1 AAATTTCAGCTCA-CAAAACCG
3817 AAATTTCAGCTCAC
1 AAATTTCAGCTCAC
3831 CCACACCCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.03
22 29 0.91
23 2 0.06
ACGTcount: A:0.40, C:0.28, G:0.10, T:0.22
Consensus pattern (21 bp):
AAATTTCAGCTCACAAAACCG
Found at i:4942 original size:18 final size:18
Alignment explanation
Indices: 4900--4943 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
4890 TTTTTATAAT
* *
4900 ATTTTTTTCTATTTTGAA
1 ATTTTTTTATATTTTCAA
4918 ATGTTTTTTATATTTTCAA
1 AT-TTTTTTATATTTTCAA
4937 ATTTTTT
1 ATTTTTT
4944 AAAAATATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (18 bp):
ATTTTTTTATATTTTCAA
Found at i:6139 original size:30 final size:29
Alignment explanation
Indices: 6077--6187 Score: 114
Period size: 30 Copynumber: 3.7 Consensus size: 29
6067 TCCGTTTACT
* * *
6077 TTTTAAATTCAATTTATAATTTCGATTTTA
1 TTTTAAATTTAATTTCTAATTTC-ATTATA
*
6107 TTTTAAATTTAATTTCTAATTTCCTGTATA
1 TTTTAAATTTAATTTCTAATTTCAT-TATA
* * * *
6137 TTTTTATTTTAATTTCTAATTTCGTTTATC
1 TTTTAAATTTAATTTCTAATTTC-ATTATA
*
6167 TTTTAAATTTTATTTCTAATT
1 TTTTAAATTTAATTTCTAATT
6188 ATTATTTTTT
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 1 0.01
30 66 0.97
31 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (29 bp):
TTTTAAATTTAATTTCTAATTTCATTATA
Found at i:7158 original size:43 final size:43
Alignment explanation
Indices: 7074--7158 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
7064 TGATCAATAC
* * * * *
7074 CAAAAAAATTTTGAATTTTTTATTTGATAAAAAGGGGGTGTCA
1 CAAAAAAATATTGAATTTTTTACTAGATAAAAAGAGAGTGTCA
*
7117 CAAAAAAA-ATTGATTTTTTTACTAGATAAAAAAGAGAGTGTC
1 CAAAAAAATATTGAATTTTTTACTAGAT-AAAAAGAGAGTGTC
7159 GGCCATTACA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
42 15 0.43
43 20 0.57
ACGTcount: A:0.44, C:0.06, G:0.16, T:0.34
Consensus pattern (43 bp):
CAAAAAAATATTGAATTTTTTACTAGATAAAAAGAGAGTGTCA
Found at i:7194 original size:105 final size:104
Alignment explanation
Indices: 7013--7212 Score: 276
Period size: 105 Copynumber: 1.9 Consensus size: 104
7003 TGGCCTACAC
* * * * *
7013 CAAAAAAAATTAATTTTTTACCAAATAAAAAAGGGGGTGTCGGCCATAGCATGATCAATACCAAA
1 CAAAAAAAATTAATTTTTTACCAAATAAAAAAGAGAGTGTCGGCCATAGCATGAACAACACAAAA
* *
7078 AAAATTTTGAATTTTTTATTTGATAAAAAGGGGGTGTCA
66 AAAATTTTGAATTTTTTATCTGACAAAAAGGGGGTGTCA
* * * *
7117 CAAAAAAAATTGATTTTTTTACTAGATAAAAAAGAGAGTGTCGGCCATTA-CATTAACAACACAA
1 CAAAAAAAATT-AATTTTTTACCAAATAAAAAAGAGAGTGTCGGCCA-TAGCATGAACAACACAA
7181 AAAAAATTTTGAATTTTTTATCTGACAAAAAG
64 AAAAAATTTTGAATTTTTTATCTGACAAAAAG
7213 AGAGTGTCGG
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
104 11 0.13
105 70 0.84
106 2 0.02
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (104 bp):
CAAAAAAAATTAATTTTTTACCAAATAAAAAAGAGAGTGTCGGCCATAGCATGAACAACACAAAA
AAAATTTTGAATTTTTTATCTGACAAAAAGGGGGTGTCA
Found at i:7239 original size:62 final size:59
Alignment explanation
Indices: 7119--7538 Score: 236
Period size: 58 Copynumber: 7.0 Consensus size: 59
7109 GGGTGTCACA
* * ***
7119 AAAAAAATTGATTTTTTTA-CTAGATAAAAAAGAGAGTGTCGGCCAT-TACATTAACAACAC
1 AAAAAAATTGAATTTTTTATCT-GA-CAAAAAGAGAGTGTCGGCCATGT-CATGGCCAACAC
* * *
7179 AAAAAAAATTTTGAATTTTTTATCTGACAAAAAGAGAGTGTCGGCCATGTTATAGTCAACACC
1 -AAAAAAA--TTGAATTTTTTATCTGACAAAAAGAGAGTGTCGGCCATGTCATGGCCAACA-C
* ** * *
7242 CAAAATTTTG-ATTTTTTATTTAGATAAAAA-AG-GATGTCGGCCATG-CAATGGCCAACAC
1 AAAAAAATTGAATTTTTTATCT-GACAAAAAGAGAG-TGTCGGCCATGTC-ATGGCCAACAC
* * * * *
7300 AAAAAAAATTTGAAATTCTTTTATCTGA-AAAAATGGGA-TGTAGGTCATGACATGGCCAATAC
1 -AAAAAAA-TTG-AATT-TTTTATCTGACAAAAA-GAGAGTGTCGGCCATGTCATGGCCAACAC
* ** * * *
7362 CAAAAAATTGAATTTTTTATCAAATAAATAGAG-GTGTCGGCCAT-TGCATGGTCAACAC
1 AAAAAAATTGAATTTTTTATCTGACAAAAAGAGAGTGTCGGCCATGT-CATGGCCAACAC
* * * *
7420 CAAAAAATTGAATTTTTTATCTGACAAAATG-GGGTGTCAGCCAT-TGCATGGCCAACACC
1 AAAAAAATTGAATTTTTTATCTGACAAAAAGAGAGTGTCGGCCATGT-CATGGCCAACA-C
* * * * ** * * *
7479 CAAAAATTTGATTTTTTTAATCAGATTAAAAGGGGGTGTCGACCATG-CAATGGCCAACAC
1 AAAAAAATTGAATTTTTT-ATCTGACAAAAAGAGAGTGTCGGCCATGTC-ATGGCCAACAC
7539 CAAATTTTTT
Statistics
Matches: 286, Mismatches: 47, Indels: 53
0.74 0.12 0.14
Matches are distributed among these distances:
57 1 0.00
58 78 0.27
59 60 0.21
60 27 0.09
61 39 0.14
62 55 0.19
63 24 0.08
64 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (59 bp):
AAAAAAATTGAATTTTTTATCTGACAAAAAGAGAGTGTCGGCCATGTCATGGCCAACAC
Found at i:7298 original size:59 final size:58
Alignment explanation
Indices: 7182--7542 Score: 259
Period size: 58 Copynumber: 6.1 Consensus size: 58
7172 ACAACACAAA
* ** * *
7182 AAAAATTTTGAATTTTTTATCTGA-CAAAAAGAGAGTGTCGGCCATGTTATAGTCAACACCC
1 AAAAA-TTTGAATTTTTTATCTGATAAAAAAG-GA-TGTCGGCCATGCAATGGCCAACA-CC
* * *
7243 AAAATTTTG-ATTTTTTATTTAGATAAAAAAGGATGTCGGCCATGCAATGGCCAACACAAA
1 AAAAATTTGAATTTTTTATCT-GATAAAAAAGGATGTCGGCCATGCAATGGCCAACAC--C
* * * *
7303 AAAAATTTGAAATTCTTTTATCTGA-AAAAATGGGATGTAGGTCATG-ACATGGCCAATACC
1 AAAAATTTG-AATT-TTTTATCTGATAAAAA-AGGATGTCGGCCATGCA-ATGGCCAACACC
* ** * *
7363 AAAAAATTGAATTTTTTATCAAATAAATAGAGG-TGTCGGCCATTGC-ATGGTCAACACC
1 AAAAATTTGAATTTTTTATCTGATAAA-AAAGGATGTCGGCCA-TGCAATGGCCAACACC
* * ** * *
7421 AAAAAATTGAATTTTTTATCTGACAAAATGGGGTGTCAGCCATTGC-ATGGCCAACACCC
1 AAAAATTTGAATTTTTTATCTGATAAAAAAGGATGTCGGCCA-TGCAATGGCCAACA-CC
* * ** * *
7480 AAAAATTTGATTTTTTTAATCAGATTAAAAGGGGGTGTCGACCATGCAATGGCCAACACC
1 AAAAATTTGAATTTTTT-ATCTGA-TAAAAAAGGATGTCGGCCATGCAATGGCCAACACC
7540 AAA
1 AAA
7543 TTTTTTTTTT
Statistics
Matches: 244, Mismatches: 38, Indels: 37
0.76 0.12 0.12
Matches are distributed among these distances:
57 3 0.01
58 71 0.29
59 57 0.23
60 38 0.16
61 41 0.17
62 27 0.11
63 7 0.03
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (58 bp):
AAAAATTTGAATTTTTTATCTGATAAAAAAGGATGTCGGCCATGCAATGGCCAACACC
Found at i:7377 original size:121 final size:118
Alignment explanation
Indices: 7120--7538 Score: 363
Period size: 121 Copynumber: 3.5 Consensus size: 118
7110 GGTGTCACAA
* * ***
7120 AAAAAATTGATTTTTTTA-CTAGATAAAAAAGAGAGTGTCGGCCAT-TACATTAACAACACAAAA
1 AAAAAATTGAATTTTTTATC-AGATAAAAAAG-GA-TGTCGGCCATGCA-ATGGCCAACACAAAA
* * * * *
7183 AAAATTTTGAATTTTTTATCTGACAAAAA-GAGAGTGTCGGCCATGTTATAGTCAACACCC
62 AAAA-TTTGAATTTTTTATCTGA-AAAAATGGGA-TGTAGGCCATG-CATGGCCAACACCC
** *
7243 AAAATTTTG-ATTTTTTATTTAGATAAAAAAGGATGTCGGCCATGCAATGGCCAACACAAAAAAA
1 AAAAAATTGAATTTTTTA-TCAGATAAAAAAGGATGTCGGCCATGCAATGGCCAACACAAAAAAA
* *
7307 ATTTGAAATTCTTTTATCTGAAAAAATGGGATGTAGGTCATGACATGGCCAATA-CC
65 ATTTG-AATT-TTTTATCTGAAAAAATGGGATGTAGGCCATG-CATGGCCAACACCC
* * * *
7363 AAAAAATTGAATTTTTTATCAAATAAATAGAGG-TGTCGGCCATTGC-ATGGTCAACAC-CAAAA
1 AAAAAATTGAATTTTTTATCAGATAAA-AAAGGATGTCGGCCA-TGCAATGGCCAACACAAAAAA
* *
7425 AA-TTGAATTTTTTATCTGACAAAATGGGGTGTCA-GCCATTGCATGGCCAACACCC
64 AATTTGAATTTTTTATCTGAAAAAATGGGATGT-AGGCCA-TGCATGGCCAACACCC
* * ** * *
7480 AAAAATTTGATTTTTTTAATCAGATTAAAAGGGGGTGTCGACCATGCAATGGCCAACAC
1 AAAAAATTGAATTTTTT-ATCAGA-TAAAAAAGGATGTCGGCCATGCAATGGCCAACAC
7539 CAAATTTTTT
Statistics
Matches: 247, Mismatches: 33, Indels: 36
0.78 0.10 0.11
Matches are distributed among these distances:
116 34 0.14
117 24 0.10
118 15 0.06
119 28 0.11
120 39 0.16
121 66 0.27
122 23 0.09
123 18 0.07
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (118 bp):
AAAAAATTGAATTTTTTATCAGATAAAAAAGGATGTCGGCCATGCAATGGCCAACACAAAAAAAA
TTTGAATTTTTTATCTGAAAAAATGGGATGTAGGCCATGCATGGCCAACACCC
Found at i:8922 original size:21 final size:22
Alignment explanation
Indices: 8878--8922 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
8868 CTTTCTATCC
*
8878 AAAATGATAAAAATAGTTTAGA
1 AAAATGATAAAAATAGTATAGA
*
8900 AAAATGATAAAAGTAGTAT-GA
1 AAAATGATAAAAATAGTATAGA
8921 AA
1 AA
8923 GAAAAATCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (22 bp):
AAAATGATAAAAATAGTATAGA
Found at i:14488 original size:55 final size:55
Alignment explanation
Indices: 14393--14537 Score: 184
Period size: 55 Copynumber: 2.6 Consensus size: 55
14383 AATCGTGCTA
* * *
14393 CATAACAATCGATTTAAACATATAAACAATCGATTTAAAAGAAATAATATTCCAAT
1 CATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAACAATATT-CAAC
** * *
14449 C-TAACAATCGATTTAAACATATAAACAATTTATTCAAAAGAAACAGTATTCTAC
1 CATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAACAATATTCAAC
* * *
14503 CATAACAATCAATTTAAATATATAAATAATCGATT
1 CATAACAATCGATTTAAACATATAAACAATCGATT
14538 TTTAATAGGG
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
54 3 0.04
55 72 0.95
56 1 0.01
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.30
Consensus pattern (55 bp):
CATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAACAATATTCAAC
Found at i:28153 original size:59 final size:58
Alignment explanation
Indices: 28055--28171 Score: 139
Period size: 59 Copynumber: 2.0 Consensus size: 58
28045 CTTTTCAAGA
* *
28055 CATGAACTTGGCAATTAATCCCACATTGATCTTTGAACTTTTCTTTGTT-CAAGCTAGTC
1 CATGAACTTGGCAATTAATCCCACATTGAACTTTAAACTTTT-TTT-TTCCAAGCTAGTC
** * *
28114 CATGAACTTGGCAATTGTTCTCACATTGAGAC-TTAAACTTTTTTTTTCCAAGTTAGTC
1 CATGAACTTGGCAATTAATCCCACATTGA-ACTTTAAACTTTTTTTTTCCAAGCTAGTC
28172 ATTGATATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
57 2 0.04
58 12 0.24
59 35 0.70
60 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.40
Consensus pattern (58 bp):
CATGAACTTGGCAATTAATCCCACATTGAACTTTAAACTTTTTTTTTCCAAGCTAGTC
Found at i:28231 original size:31 final size:31
Alignment explanation
Indices: 28216--28297 Score: 155
Period size: 31 Copynumber: 2.6 Consensus size: 31
28206 CTCAATGTTG
28216 GAACAATTGCCAAGTTCAAGCCCTAATATGA
1 GAACAATTGCCAAGTTCAAGCCCTAATATGA
28247 GAACAATTGCCAAGTTCAAGCCCTAATATGA
1 GAACAATTGCCAAGTTCAAGCCCTAATATGA
*
28278 GAACAATTGTCAAGTTCAAG
1 GAACAATTGCCAAGTTCAAG
28298 GACTAACTTA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (31 bp):
GAACAATTGCCAAGTTCAAGCCCTAATATGA
Found at i:30919 original size:26 final size:26
Alignment explanation
Indices: 30882--30935 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
30872 GCACATTTAC
30882 TGGTGTAGAGGGAATGATTTAGACCA
1 TGGTGTAGAGGGAATGATTTAGACCA
*
30908 TGGTGTATAGGGAATGATTTAGACCA
1 TGGTGTAGAGGGAATGATTTAGACCA
30934 TG
1 TG
30936 TAACAAGCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.07, G:0.33, T:0.30
Consensus pattern (26 bp):
TGGTGTAGAGGGAATGATTTAGACCA
Found at i:31405 original size:24 final size:24
Alignment explanation
Indices: 31325--31396 Score: 135
Period size: 24 Copynumber: 3.0 Consensus size: 24
31315 ATTTGGCTCC
31325 TAAGTTTGTATTTAACACAGCCAG
1 TAAGTTTGTATTTAACACAGCCAG
*
31349 TAAGTTTGTATTTAACTCAGCCAG
1 TAAGTTTGTATTTAACACAGCCAG
31373 TAAGTTTGTATTTAACACAGCCAG
1 TAAGTTTGTATTTAACACAGCCAG
31397 CAATCTTGTG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (24 bp):
TAAGTTTGTATTTAACACAGCCAG
Found at i:33264 original size:84 final size:84
Alignment explanation
Indices: 33123--33290 Score: 336
Period size: 84 Copynumber: 2.0 Consensus size: 84
33113 ATTACTGTAC
33123 TGTTTGTATAAATGTAATTCTCAACTCTTCACATCATTGTCTAGCTGAAGCTAGCTAAATATGAT
1 TGTTTGTATAAATGTAATTCTCAACTCTTCACATCATTGTCTAGCTGAAGCTAGCTAAATATGAT
33188 ACGCAAACAATTTTGTTTA
66 ACGCAAACAATTTTGTTTA
33207 TGTTTGTATAAATGTAATTCTCAACTCTTCACATCATTGTCTAGCTGAAGCTAGCTAAATATGAT
1 TGTTTGTATAAATGTAATTCTCAACTCTTCACATCATTGTCTAGCTGAAGCTAGCTAAATATGAT
33272 ACGCAAACAATTTTGTTTA
66 ACGCAAACAATTTTGTTTA
33291 GTGCTGCTTA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 84 1.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (84 bp):
TGTTTGTATAAATGTAATTCTCAACTCTTCACATCATTGTCTAGCTGAAGCTAGCTAAATATGAT
ACGCAAACAATTTTGTTTA
Found at i:34494 original size:9 final size:9
Alignment explanation
Indices: 34480--34522 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
34470 ATATTTAAAG
34480 TTTATTTTT
1 TTTATTTTT
*
34489 TTTA-TTTC
1 TTTATTTTT
*
34497 TTTGTTTTT
1 TTTATTTTT
*
34506 TTTATATTT
1 TTTATTTTT
34515 TTTATTTT
1 TTTATTTT
34523 ATAAATTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
8 6 0.22
9 21 0.78
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.84
Consensus pattern (9 bp):
TTTATTTTT
Found at i:34522 original size:17 final size:17
Alignment explanation
Indices: 34480--34522 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
34470 ATATTTAAAG
34480 TTTATTTTTTTTATTTC
1 TTTATTTTTTTTATTTC
* *
34497 TTTGTTTTTTTTATATTT
1 TTTATTTTTTTTAT-TTC
34515 TTTATTTT
1 TTTATTTT
34523 ATAAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.84
Consensus pattern (17 bp):
TTTATTTTTTTTATTTC
Found at i:39475 original size:19 final size:18
Alignment explanation
Indices: 39451--39486 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
39441 ACTAGCAACT
39451 ACTAACTGTATAATAACAA
1 ACTAACTG-ATAATAACAA
*
39470 ACTAACTGATATTAACA
1 ACTAACTGATAATAACA
39487 GCTTGTGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (18 bp):
ACTAACTGATAATAACAA
Found at i:42633 original size:25 final size:23
Alignment explanation
Indices: 42590--42636 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 23
42580 ACAATTAAAT
42590 AATAATCCAAACAAATTAAACAC
1 AATAATCCAAACAAATTAAACAC
*
42613 AATAATCTCACAACAATTTAAACA
1 AATAATC-CA-AACAAATTAAACA
42637 TATGTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 2 0.10
25 12 0.57
ACGTcount: A:0.57, C:0.21, G:0.00, T:0.21
Consensus pattern (23 bp):
AATAATCCAAACAAATTAAACAC
Found at i:42752 original size:16 final size:16
Alignment explanation
Indices: 42731--42764 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
42721 AATCTTTCAC
42731 AAAATAATATAAAATA
1 AAAATAATATAAAATA
* *
42747 AAAATAATTTTAAATA
1 AAAATAATATAAAATA
42763 AA
1 AA
42765 TTTTATTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAATAATATAAAATA
Found at i:45745 original size:6 final size:6
Alignment explanation
Indices: 45734--45760 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
45724 CCATCGAGTT
45734 CCGCTG CCGCTG CCGCTG CCGCTG CCG
1 CCGCTG CCGCTG CCGCTG CCGCTG CCG
45761 TTGGATTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.52, G:0.33, T:0.15
Consensus pattern (6 bp):
CCGCTG
Found at i:58438 original size:6 final size:6
Alignment explanation
Indices: 58427--58473 Score: 85
Period size: 6 Copynumber: 7.7 Consensus size: 6
58417 TTTTATTTAA
58427 AGATTG AGATTG AGATTG AGATTG AGATTG AGATTG AGATTTG AGAT
1 AGATTG AGATTG AGATTG AGATTG AGATTG AGATTG AGA-TTG AGAT
58474 AGAATTGAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 34 0.85
7 6 0.15
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (6 bp):
AGATTG
Found at i:58480 original size:18 final size:19
Alignment explanation
Indices: 58430--58485 Score: 82
Period size: 18 Copynumber: 3.1 Consensus size: 19
58420 TATTTAAAGA
58430 TTGAGATTGAGATTGAGA-
1 TTGAGATTGAGATTGAGAT
58448 TTGAGATTGAGATTGAGAT
1 TTGAGATTGAGATTGAGAT
*
58467 TTGAGATAGA-ATTGA-AT
1 TTGAGATTGAGATTGAGAT
58484 TT
1 TT
58486 ATAAATTTGG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
17 4 0.11
18 23 0.64
19 9 0.25
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.38
Consensus pattern (19 bp):
TTGAGATTGAGATTGAGAT
Found at i:62771 original size:12 final size:11
Alignment explanation
Indices: 62756--62820 Score: 69
Period size: 12 Copynumber: 5.7 Consensus size: 11
62746 CAAACAATTC
62756 AAATAACAACAA
1 AAATAACAA-AA
62768 AAATAACAAAA
1 AAATAACAAAA
*
62779 AAA-AATAGAAA
1 AAATAACA-AAA
62790 AAATAACAATAA
1 AAATAACAA-AA
*
62802 AAATAACAACA
1 AAATAACAAAA
*
62813 AAACAACA
1 AAATAACA
62821 TCAAAATAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
10 3 0.07
11 20 0.43
12 23 0.50
ACGTcount: A:0.77, C:0.12, G:0.02, T:0.09
Consensus pattern (11 bp):
AAATAACAAAA
Found at i:62827 original size:34 final size:33
Alignment explanation
Indices: 62732--62852 Score: 95
Period size: 34 Copynumber: 3.6 Consensus size: 33
62722 ATAAAAAAGC
* * *
62732 ATAAAAATAACATCCAAACAATTC-AAATAACA
1 ATAAAAATAACAACAAAACAAATCAAAATAACA
* *
62764 ACAAAAATAACAA-AAAA-AAATAGAAAAAATAACA
1 ATAAAAATAACAACAAAACAAAT---CAAAATAACA
**
62798 ATAAAAATAACAACAAAACAACATCAAAATAGTA
1 ATAAAAATAACAACAAAACAA-ATCAAAATAACA
* * *
62832 AAAAAAATAGCATCAAAACAA
1 ATAAAAATAACAACAAAACAA
62853 TAAAAAACAT
Statistics
Matches: 70, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
30 3 0.04
31 3 0.04
32 11 0.16
34 45 0.64
35 4 0.06
36 2 0.03
37 2 0.03
ACGTcount: A:0.70, C:0.14, G:0.02, T:0.13
Consensus pattern (33 bp):
ATAAAAATAACAACAAAACAAATCAAAATAACA
Found at i:62838 original size:23 final size:22
Alignment explanation
Indices: 62780--62889 Score: 79
Period size: 22 Copynumber: 5.2 Consensus size: 22
62770 ATAACAAAAA
*
62780 AAAATAG--AAAAAATAACAATA
1 AAAATAGTAAAAAAATAAC-ATC
** * *
62801 AAAATAACAACAAAACAACATC
1 AAAATAGTAAAAAAATAACATC
*
62823 AAAATAGTAAAAAAAATAGCATC
1 AAAATAGT-AAAAAAATAACATC
* *
62846 -AAA-A-CAATAAAA-AACATC
1 AAAATAGTAAAAAAATAACATC
*
62864 AAAATAGTAAAAACATAACATC
1 AAAATAGTAAAAAAATAACATC
62886 AAAA
1 AAAA
62890 CAGCAAACAT
Statistics
Matches: 67, Mismatches: 15, Indels: 13
0.71 0.16 0.14
Matches are distributed among these distances:
18 5 0.07
19 9 0.13
20 1 0.01
21 12 0.18
22 21 0.31
23 19 0.28
ACGTcount: A:0.70, C:0.13, G:0.04, T:0.14
Consensus pattern (22 bp):
AAAATAGTAAAAAAATAACATC
Found at i:62874 original size:18 final size:18
Alignment explanation
Indices: 62812--62876 Score: 58
Period size: 18 Copynumber: 3.3 Consensus size: 18
62802 AAATAACAAC
62812 AAAACAACATCAAAATAGT
1 AAAA-AACATCAAAATAGT
* *
62831 AAAAAAAATAGCATCAAAACAAT
1 ---AAAAA-A-CATCAAAATAGT
62854 AAAAAACATCAAAATAGT
1 AAAAAACATCAAAATAGT
62872 AAAAA
1 AAAAA
62877 CATAACATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 15 0.41
19 1 0.03
20 5 0.14
21 1 0.03
22 5 0.14
23 10 0.27
ACGTcount: A:0.69, C:0.12, G:0.05, T:0.14
Consensus pattern (18 bp):
AAAAAACATCAAAATAGT
Found at i:62887 original size:40 final size:42
Alignment explanation
Indices: 62806--62896 Score: 132
Period size: 40 Copynumber: 2.2 Consensus size: 42
62796 CAATAAAAAT
*
62806 AACAACAAAACAACATCAAAATAGTAAAAAAAATAGCATCAA
1 AACAACAAAACAACATCAAAATAGTAAAAAAAATAACATCAA
* *
62848 AACAATAAAA-AACATCAAAATAGT-AAAAACATAACATCAA
1 AACAACAAAACAACATCAAAATAGTAAAAAAAATAACATCAA
*
62888 AACAGCAAA
1 AACAACAAA
62897 CATAGCAACC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 21 0.48
41 14 0.32
42 9 0.20
ACGTcount: A:0.67, C:0.16, G:0.04, T:0.12
Consensus pattern (42 bp):
AACAACAAAACAACATCAAAATAGTAAAAAAAATAACATCAA
Found at i:63628 original size:61 final size:61
Alignment explanation
Indices: 63563--63693 Score: 219
Period size: 61 Copynumber: 2.1 Consensus size: 61
63553 GTCATGTCAA
* *
63563 AAAAAAAAATTTCAAAATTTTTTTGTGTTGGCCATGCAATGGTCGACACCAT-CTTTTTGAG
1 AAAAAAAAATTTCAAAATTTTTTTATGTTGACCATGCAATGGTCGACACC-TCCTTTTTGAG
*
63624 AAAAAAAATTTTCAAAATTTTTTTATGTTGACCATGCAATGGTCGACACCTCCTTTTTGAG
1 AAAAAAAAATTTCAAAATTTTTTTATGTTGACCATGCAATGGTCGACACCTCCTTTTTGAG
63685 AAAAAAAAA
1 AAAAAAAAA
63694 CAATTTTGGG
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
60 1 0.02
61 64 0.98
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (61 bp):
AAAAAAAAATTTCAAAATTTTTTTATGTTGACCATGCAATGGTCGACACCTCCTTTTTGAG
Found at i:63822 original size:62 final size:58
Alignment explanation
Indices: 63730--63894 Score: 159
Period size: 59 Copynumber: 2.8 Consensus size: 58
63720 TTCTCGAATA
** * * *
63730 AAAAAATTGCATTTTTGGGTATTGGCCATGCAATGGCCGACACCCCCTGTTCTTAGAT
1 AAAAAATTAAATTTTTTGGTGTTGGCCATGCAATGGCCGACACCCCCTGTTATTAGAT
* ** * * * *
63788 AAAAAAATTTCAAATTTTTTTGGTGTTGACCATGCAATGATCGACATCCCCTTTTTATTTGGT
1 -AAAAAA-TT-AAA-TTTTTTGGTGTTGGCCATGCAATGGCCGACA-CCCCCTGTTATTAGAT
* *
63851 AAAAAATTAAATTTTTTGGTGTTGGCCATGTAATGGCTGACACC
1 AAAAAATTAAATTTTTTGGTGTTGGCCATGCAATGGCCGACACC
63895 AACTTCTTCT
Statistics
Matches: 85, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
58 2 0.02
59 32 0.38
60 5 0.06
61 3 0.04
62 32 0.38
63 11 0.13
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (58 bp):
AAAAAATTAAATTTTTTGGTGTTGGCCATGCAATGGCCGACACCCCCTGTTATTAGAT
Found at i:65253 original size:24 final size:24
Alignment explanation
Indices: 65210--65262 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
65200 TATATTGGGG
* *
65210 ATCGGGTTGGTGCTCCGGCTGGTA
1 ATCGGGTTGGTCCTCAGGCTGGTA
* * *
65234 CTCGGGTTGGTCCTGAGGCTTGTA
1 ATCGGGTTGGTCCTCAGGCTGGTA
65258 ATCGG
1 ATCGG
65263 CTTCATCCGC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.09, C:0.21, G:0.40, T:0.30
Consensus pattern (24 bp):
ATCGGGTTGGTCCTCAGGCTGGTA
Found at i:67353 original size:41 final size:41
Alignment explanation
Indices: 67308--67439 Score: 96
Period size: 41 Copynumber: 3.1 Consensus size: 41
67298 TTTATTTAAA
67308 TATTTAAAATTAATAAATAATGTATTGTCAAATCAACACAT
1 TATTTAAAATTAATAAATAATGTATTGTCAAATCAACACAT
* * **
67349 TATTTCATAAAAATTGTAATATAATAATAATAATTTTTC---TTTA-A-A-
1 TA-TT--T-AAAA-T-TAATA-AATAAT-GT-A-TTGTCAAATCAACACAT
67394 TATTTAAAATTAATAAATAATGTATTGTCAAATCAACACAT
1 TATTTAAAATTAATAAATAATGTATTGTCAAATCAACACAT
67435 TATTT
1 TATTT
67440 GATAAAAATT
Statistics
Matches: 67, Mismatches: 8, Indels: 32
0.63 0.07 0.30
Matches are distributed among these distances:
35 4 0.06
36 1 0.01
37 1 0.01
38 8 0.12
39 6 0.09
40 2 0.03
41 11 0.16
42 3 0.04
44 3 0.04
45 6 0.09
46 2 0.03
47 6 0.09
48 8 0.12
49 1 0.01
50 1 0.01
51 4 0.06
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.42
Consensus pattern (41 bp):
TATTTAAAATTAATAAATAATGTATTGTCAAATCAACACAT
Found at i:67373 original size:86 final size:86
Alignment explanation
Indices: 67269--67693 Score: 715
Period size: 86 Copynumber: 4.9 Consensus size: 86
67259 TTAAAATATA
*
67269 ATAAAAATTATAATATAATAATAATAATTTTTATTTAAATATTTAAAATTAATAAATAATGTATT
1 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATTTAAAATTAATAAATAATGTATT
*
67334 GTCAAATCAACACATTATTTC
66 GTCAAATCAACACATTATTTG
*
67355 ATAAAAATTGTAATATAATAATAATAATTTTTCTTTAAATATTTAAAATTAATAAATAATGTATT
1 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATTTAAAATTAATAAATAATGTATT
67420 GTCAAATCAACACATTATTTG
66 GTCAAATCAACACATTATTTG
*
67441 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATTTAAACTTAATAAATAATGTATT
1 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATTTAAAATTAATAAATAATGTATT
*
67506 ATCAAATCAACACATTATTTG
66 GTCAAATCAACACATTATTTG
* * *
67527 ATAAAAATTATAATATAATATAATATTAATAATTTTTATTTAAATATTTAAAAATAATATATAAT
1 ATAAAAATTGTAATAT-A-AT-A-A-TAATAATTTTTATTTAAATATTTAAAATTAATAAATAAT
* *
67592 GTATTATCAAATCAACAAATTATTTG
61 GTATTGTCAAATCAACACATTATTTG
67618 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATTTAAAATTAATAAATAATGTATT
1 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATTTAAAATTAATAAATAATGTATT
67683 GTCAAATCAAC
66 GTCAAATCAAC
Statistics
Matches: 319, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
86 233 0.73
87 2 0.01
88 3 0.01
89 3 0.01
90 2 0.01
91 76 0.24
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (86 bp):
ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATTTAAAATTAATAAATAATGTATT
GTCAAATCAACACATTATTTG
Found at i:67593 original size:177 final size:172
Alignment explanation
Indices: 67269--67693 Score: 715
Period size: 177 Copynumber: 2.4 Consensus size: 172
67259 TTAAAATATA
*
67269 ATAAAAATTATAATATAATAATAATAATTTTTATTTAAATATTTAAAATTAATAAATAATGTATT
1 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATTTAAAATTAATAAATAATGTATT
* *
67334 GTCAAATCAACACATTATTTCATAAAAATTGTAATATAATAATAATAATTTTTCTTTAAATATTT
66 GTCAAATCAACACATTATTTCATAAAAATTATAATATAATAATAATAATTTTTATTTAAATATTT
* * *
67399 AAAATTAATAAATAATGTATTGTCAAATCAACACATTATTTG
131 AAAAATAATAAATAATGTATTATCAAATCAACAAATTATTTG
*
67441 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATTTAAACTTAATAAATAATGTATT
1 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATTTAAAATTAATAAATAATGTATT
* *
67506 ATCAAATCAACACATTATTTGATAAAAATTATAATATAATATAATATTAATAATTTTTATTTAAA
66 GTCAAATCAACACATTATTTCATAAAAATTATAATAT-A-AT-A-A-TAATAATTTTTATTTAAA
*
67571 TATTTAAAAATAATATATAATGTATTATCAAATCAACAAATTATTTG
126 TATTTAAAAATAATAAATAATGTATTATCAAATCAACAAATTATTTG
67618 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATTTAAAATTAATAAATAATGTATT
1 ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATTTAAAATTAATAAATAATGTATT
67683 GTCAAATCAAC
66 GTCAAATCAAC
Statistics
Matches: 236, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
172 97 0.41
173 1 0.00
174 2 0.01
175 1 0.00
176 1 0.00
177 134 0.57
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (172 bp):
ATAAAAATTGTAATATAATAATAATAATTTTTATTTAAATATTTAAAATTAATAAATAATGTATT
GTCAAATCAACACATTATTTCATAAAAATTATAATATAATAATAATAATTTTTATTTAAATATTT
AAAAATAATAAATAATGTATTATCAAATCAACAAATTATTTG
Done.