Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012386.1 Kokia drynarioides strain JFW-HI SEQ_127390, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5895
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35


Found at i:4382 original size:5 final size:5

Alignment explanation


    Indices: 4372--4399  Score: 56
    Period size: 5  Copynumber: 5.6  Consensus size: 5

       4362 TTTGGCTGGA

                                             
       4372 GGTTC GGTTC GGTTC GGTTC GGTTC GGT
          1 GGTTC GGTTC GGTTC GGTTC GGTTC GGT

       4400 GGCCTGGTTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   23  1.00

ACGTcount: A:0.00, C:0.18, G:0.43, T:0.39


Consensus pattern (5 bp):   
GGTTC

Done.