Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012393.1 Kokia drynarioides strain JFW-HI SEQ_127397, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4756
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31

Warning! 53 characters in sequence are not A, C, G, or T


Found at i:1314 original size:43 final size:43

Alignment explanation


    Indices: 1232--1316  Score: 118
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       1222 ATTAACATGT

                                  *        *           
       1232 TAAATTATATTACTTGACTCGTGTTAATATGGTTGCATGTTAC
          1 TAAATTATATTACTTGACTCGTATTAATATGCTTGCATGTTAC

                           *    *                      
       1275 TAAATTATATTACTTTACTCTTATTAATAT-CTTGACATGTTA
          1 TAAATTATATTACTTGACTCGTATTAATATGCTTG-CATGTTA

       1317 TTAATTGTGC


Statistics
Matches: 37,  Mismatches: 4, Indels: 2
        0.86            0.09        0.05

Matches are distributed among these distances:
  42    3  0.08
  43   34  0.92

ACGTcount: A:0.31, C:0.12, G:0.11, T:0.47


Consensus pattern (43 bp):   
TAAATTATATTACTTGACTCGTATTAATATGCTTGCATGTTAC

Found at i:1953 original size:21 final size:21

Alignment explanation


    Indices: 1927--1967  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1917 TCATCGTGAT

                  *      *       
       1927 ACTCTATTCCTCCCGGGCAAG
          1 ACTCTACTCCTCCAGGGCAAG

                                
       1948 ACTCTACTCCTCCAGGGCAA
          1 ACTCTACTCCTCCAGGGCAA

       1968 ATGGACCCTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.22, C:0.39, G:0.17, T:0.22


Consensus pattern (21 bp):   
ACTCTACTCCTCCAGGGCAAG
Done.