Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012398.1 Kokia drynarioides strain JFW-HI SEQ_127402, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4153
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:933 original size:16 final size:16

Alignment explanation


    Indices: 914--955  Score: 57
    Period size: 16  Copynumber: 2.6  Consensus size: 16

        904 GGGGCCTTTT

                      *     
        914 TTTAATTTATTTTAAA
          1 TTTAATTTATCTTAAA

                 *          
        930 TTTAAATTATCTTAAA
          1 TTTAATTTATCTTAAA

                      
        946 TTTAAATTTA
          1 TTT-AATTTA

        956 AATTCAAAGT


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  16   17  0.77
  17    5  0.23

ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57


Consensus pattern (16 bp):   
TTTAATTTATCTTAAA

Found at i:1672 original size:13 final size:13

Alignment explanation


    Indices: 1654--1692  Score: 51
    Period size: 13  Copynumber: 3.0  Consensus size: 13

       1644 ATTGATAACT

                         
       1654 TTATTAATTATTA
          1 TTATTAATTATTA

                    *  * 
       1667 TTATTAATAATCA
          1 TTATTAATTATTA

            *            
       1680 GTATTAATTATTA
          1 TTATTAATTATTA

       1693 AGAATAAAAA


Statistics
Matches: 21,  Mismatches: 5, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54


Consensus pattern (13 bp):   
TTATTAATTATTA
Done.