genome.fa.s12399.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012399.1 Kokia drynarioides strain JFW-HI SEQ_127403, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94448

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2477--2534	31	1.9	31	89	3	91	46	1	6	44	1.40
6596--6647	21	2.5	21	87	0	77	25	26	21	26	1.99
6615--6651	14	2.6	14	95	0	65	24	21	21	32	1.98
9307--9509	30	6.9	30	80	8	132	36	24	2	35	1.69
9376--9544	58	2.9	56	76	10	169	36	23	1	38	1.65
9350--9545	88	2.2	89	81	4	227	37	23	2	36	1.67
9350--9544	30	6.6	30	78	5	173	37	23	2	36	1.67
21601--21807	39	5.3	39	79	4	166	24	28	18	28	1.98
21622--21901	78	3.6	78	78	4	208	24	30	20	25	1.99
21800--21926	39	3.3	39	84	2	121	24	33	18	24	1.97
21859--21943	39	2.2	39	87	8	120	28	32	18	20	1.96
21912--22048	61	2.2	61	92	0	220	42	28	8	21	1.81
23480--23513	17	2.0	17	88	0	50	76	2	5	14	1.09
24293--24337	22	2.0	22	100	0	90	33	22	13	31	1.92
24365--24550	30	6.2	30	78	9	184	36	23	1	38	1.62
24365--24550	60	3.1	58	82	6	221	36	23	1	38	1.62
24343--24561	30	7.3	30	77	11	173	33	23	2	40	1.69
24365--24561	59	3.3	59	81	6	220	35	23	2	39	1.67
25693--25745	25	2.1	25	82	6	63	56	5	0	37	1.23
26530--26555	6	4.3	6	100	0	52	30	0	0	69	0.89
27302--27338	19	2.1	18	85	14	51	48	2	5	43	1.40
35408--35672	131	2.0	131	80	10	301	41	13	16	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38081--38105	13	1.9	13	100	0	50	88	4	0	8	0.64
42750--42796	19	2.5	19	96	0	85	14	10	21	53	1.71
44312--44380	29	2.3	30	82	9	79	36	5	7	50	1.54
44492--44593	31	3.4	31	75	2	100	46	6	6	40	1.57
44705--44743	19	2.1	19	85	0	51	43	23	0	33	1.54
44854--44887	12	2.8	12	90	0	50	35	5	26	32	1.81
47022--47273	134	1.9	133	85	3	346	28	17	13	40	1.88
61406--61444	21	1.9	19	85	10	51	15	35	5	43	1.69
77328--77599	139	2.0	134	86	3	382	41	13	15	29	1.85
79225--79266	15	2.8	15	100	0	84	0	14	45	40	1.45
81316--81352	18	2.1	18	89	0	56	35	2	0	62	1.10
81322--81379	27	2.2	26	78	3	62	36	3	0	60	1.14
81728--81898	62	2.7	65	81	11	212	40	2	4	52	1.35
84355--84434	31	2.6	31	90	3	119	28	16	12	42	1.84
87050--88042	209	4.8	209	89	1	1402	24	22	16	37	1.94
93442--93567	49	2.5	50	79	5	148	36	17	24	21	1.94
93604--93871	40	6.8	40	79	6	253	30	26	18	23	1.98
93641--93871	79	2.9	79	91	0	365	31	26	18	23	1.97

Tables:   1

The End!