genome.fa.s12400.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012400.1 Kokia drynarioides strain JFW-HI SEQ_127404, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  195259

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2305--2382	29	2.7	29	80	9	88	24	8	1	65	1.29
2305--2386	28	2.9	28	75	15	78	24	8	1	65	1.27
3277--3337	29	2.1	29	84	6	79	22	14	14	47	1.81
8575--8622	21	2.5	20	80	12	55	39	8	2	50	1.44
14272--14322	25	2.0	25	85	7	68	68	0	1	29	1.00
31530--31654	38	3.3	36	82	4	115	32	17	16	33	1.92
31550--31768	76	2.9	76	78	5	228	33	18	15	32	1.92
31585--31688	38	2.7	38	86	2	138	33	22	15	28	1.94
38658--38691	18	1.9	18	88	5	52	47	0	2	50	1.16
39753--39806	26	2.1	26	89	0	81	27	3	9	59	1.45
39810--39857	7	6.7	7	78	4	51	22	0	29	47	1.51
39799--39841	21	2.1	20	91	4	68	23	0	25	51	1.49
39825--39856	15	2.1	15	100	0	64	18	0	31	50	1.48
44801--44869	23	3.1	22	72	14	61	55	2	2	39	1.30
52277--52303	9	3.0	9	100	0	54	66	0	0	33	0.92
54310--54336	3	9.0	3	100	0	54	66	0	0	33	0.92
54707--54749	11	3.8	11	80	17	52	30	2	2	65	1.18
54710--54753	23	1.9	23	90	0	70	31	2	4	61	1.28
56257--56288	16	2.0	16	93	0	55	53	3	18	25	1.59
56752--56989	52	4.6	52	83	6	261	26	12	23	37	1.91
61448--61479	16	2.0	16	93	0	55	53	3	18	25	1.59
61940--62219	52	5.4	52	90	1	411	25	14	24	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68016--68055	21	2.0	20	85	5	53	70	0	22	7	1.12
69214--69263	21	2.4	21	82	0	55	28	14	26	32	1.94
71914--71972	19	3.2	19	85	2	75	30	33	15	20	1.93
73058--73089	3	11.0	3	93	6	57	31	0	0	68	0.90
79215--79253	17	2.3	17	86	0	51	17	15	12	53	1.72
79215--79280	34	1.9	34	84	6	89	18	18	13	50	1.79
85358--85397	13	2.9	14	85	7	55	20	20	25	35	1.96
89399--89427	10	3.0	10	95	5	51	68	10	20	0	1.18
90560--90598	20	1.9	21	89	5	62	20	2	5	71	1.17
94010--94043	18	2.0	16	88	11	50	52	0	0	47	1.00
98299--98465	23	7.0	23	80	8	181	47	11	5	35	1.62
98319--98376	29	2.0	29	93	0	98	51	6	3	37	1.46
98299--98465	46	3.5	46	88	4	208	47	11	5	35	1.62
99229--99363	10	12.6	10	75	14	110	37	20	3	38	1.71
99196--99362	78	2.1	79	84	1	219	38	20	4	36	1.72
99241--99547	68	4.4	70	71	18	233	36	20	5	36	1.77
99241--99430	88	2.2	88	91	0	299	36	21	5	37	1.76
99336--99547	59	3.5	58	79	8	201	36	20	6	36	1.79
99452--99488	10	3.5	11	82	10	51	43	21	2	32	1.67
99580--99645	23	2.8	23	81	4	78	51	12	1	34	1.48
102597--102644	10	4.7	10	89	2	69	39	20	4	35	1.72
102637--102774	23	6.0	23	87	1	188	48	12	3	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102637--102770	69	1.9	69	89	3	207	48	11	3	35	1.58
103696--103792	19	5.1	19	93	0	140	30	17	28	22	1.97
103797--103876	35	2.3	35	91	0	124	35	10	22	32	1.87
103808--103889	35	2.3	35	87	4	103	37	9	23	29	1.87
106046--106089	22	2.0	23	86	4	63	31	15	9	43	1.79
115064--115113	13	3.9	13	76	5	57	80	0	14	6	0.90
115060--115108	25	2.0	25	91	0	80	79	0	16	4	0.88
118174--118218	24	1.9	23	82	13	56	44	2	2	51	1.26
118753--118888	32	4.5	32	78	10	133	25	16	11	46	1.81
119118--119285	31	5.5	31	67	21	104	50	11	14	23	1.75
119107--119284	60	3.0	58	84	5	205	51	11	14	23	1.74
119287--119342	21	2.7	21	75	2	60	50	0	0	50	1.00
119737--119773	10	3.5	11	82	17	51	54	0	0	45	1.00
119737--119778	20	2.2	20	87	8	61	54	0	0	45	0.99
119602--120048	166	2.9	149	77	9	371	38	7	7	46	1.60
120181--120228	25	1.9	25	91	0	78	45	0	2	52	1.12
120175--120230	12	4.6	12	75	18	53	46	0	1	51	1.11
120466--120504	16	2.4	16	95	0	69	38	10	0	51	1.36
138045--138084	21	1.9	21	84	0	53	12	25	22	40	1.89
139271--139307	17	2.2	17	90	0	56	75	5	2	16	1.10
153366--153447	26	3.2	26	61	19	62	36	21	12	29	1.90
153136--153471	52	6.5	52	85	2	437	38	23	13	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154556--154627	23	3.2	23	64	25	62	52	16	1	29	1.52
154541--154627	45	1.9	45	100	0	174	54	13	2	29	1.52
158682--158726	14	3.0	14	87	9	54	64	4	8	22	1.40
158773--158811	19	1.9	19	85	10	51	64	2	5	28	1.28
158835--159189	56	6.2	54	77	10	248	37	2	23	36	1.69
158863--159203	29	11.9	28	76	8	242	37	1	23	37	1.66
159712--159745	8	4.0	9	88	11	54	0	29	0	70	0.87
159713--159746	17	2.1	16	94	5	59	0	26	0	73	0.83
160598--161051	52	8.7	52	91	0	685	36	23	13	26	1.92
164750--164798	23	2.1	23	84	3	62	51	14	16	18	1.77
165073--165322	109	2.3	108	85	4	330	17	14	12	55	1.69
166978--167031	21	2.6	21	82	5	65	7	9	50	33	1.62
168063--168107	21	2.1	21	83	0	54	51	4	20	24	1.66
168355--168633	109	2.6	108	75	11	274	19	12	12	55	1.69
168885--168926	22	2.0	22	95	4	77	4	0	30	64	1.14
171571--171612	2	21.0	2	100	0	84	50	0	0	50	1.00
173472--173590	59	2.0	59	96	1	220	34	3	21	40	1.70
179575--179606	2	16.0	2	100	0	64	50	0	0	50	1.00
183591--183644	24	2.3	23	87	9	74	29	16	16	37	1.91
184180--184238	30	2.0	30	93	0	100	18	25	5	50	1.67
188068--188228	87	1.9	87	87	0	241	19	29	16	34	1.94
190283--190429	23	6.4	22	74	16	97	12	23	20	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195229--195259	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1

The End!