Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012401.1 Kokia drynarioides strain JFW-HI SEQ_127405, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2931
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32


Found at i:95 original size:48 final size:46

Alignment explanation


    Indices: 57--235  Score: 225
    Period size: 48  Copynumber: 3.7  Consensus size: 46

         47 CAAGGCATTT

                                        *                    
         57 AACAAAGATGCATTTAACAAACAAAACAATTAATAATGCA-TATTACTA
          1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGTA-T--TA

                                      * *                *  
        105 AACAAAGATGCATTTAACAAACAAAATAGTTAATAATGCAGATTACTA
          1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAG--TATTA

                                              *             
        153 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAGATTATTA
          1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAG--TATTA

                                  *            
        201 AACAAAGATGCATTTAACAAAAAAAAACACTTAAT
          1 AACAAAGATGCATTTAAC-AAACAAAACACTTAAT

        236 GAAGCATAAA


Statistics
Matches: 119,  Mismatches: 8, Indels: 7
        0.89            0.06        0.05

Matches are distributed among these distances:
  48  102  0.86
  49   15  0.13
  51    2  0.02

ACGTcount: A:0.54, C:0.14, G:0.08, T:0.24


Consensus pattern (46 bp):   
AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGTATTA
Done.