genome.fa.s12407.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012407.1 Kokia drynarioides strain JFW-HI SEQ_127411, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164702

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6298--6568	53	5.1	53	87	3	359	29	15	18	35	1.92
6306--6575	107	2.6	104	88	2	371	30	16	18	35	1.93
13793--13818	12	2.2	12	100	0	52	7	26	30	34	1.85
15040--15193	72	2.1	72	82	0	191	22	26	14	36	1.93
15109--15238	47	2.7	47	89	1	179	19	23	19	37	1.94
15010--15223	24	9.0	24	75	1	115	23	25	14	36	1.93
15040--15238	24	8.3	24	75	1	148	21	25	16	37	1.93
17087--17121	18	1.9	18	88	0	52	45	0	0	54	0.99
17083--17126	21	2.2	20	87	4	61	50	0	0	50	1.00
22091--22129	18	2.2	18	86	9	53	20	17	0	61	1.34
24905--24935	2	15.5	2	100	0	62	51	0	0	48	1.00
28715--28755	21	2.0	21	95	0	73	29	29	2	39	1.70
38549--38606	29	2.0	30	93	3	100	43	6	6	43	1.58
41186--41271	24	3.6	24	77	0	91	19	26	17	36	1.94
42391--42419	14	2.0	15	93	6	51	34	20	10	34	1.87
44689--44733	23	2.0	23	82	8	56	46	26	17	8	1.78
48109--48153	20	2.2	20	84	7	56	31	13	2	53	1.52
49553--49809	24	10.7	24	78	0	217	22	27	16	33	1.95
49553--49809	48	5.4	48	83	0	289	22	27	16	33	1.95
49553--49810	72	3.6	72	77	0	246	22	27	16	33	1.95
50234--50278	14	2.8	17	74	19	60	35	13	0	51	1.41
51156--51202	24	1.9	25	82	4	60	25	17	12	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57528--57557	15	2.0	15	93	0	51	10	13	10	66	1.44
61016--61056	13	3.2	13	85	0	55	43	21	17	17	1.87
61051--61111	30	2.0	30	87	3	86	29	16	24	27	1.96
65070--65118	20	2.6	19	81	12	66	44	2	4	48	1.33
65101--65171	24	2.6	28	76	23	87	47	5	2	43	1.41
65114--65166	24	2.2	24	100	0	106	45	7	3	43	1.50
67008--67069	31	2.0	32	83	3	81	48	9	3	38	1.52
69711--69761	22	2.3	23	83	12	63	11	17	3	66	1.38
79101--79245	38	3.7	38	74	7	137	49	4	8	37	1.54
79082--79257	79	2.2	79	92	0	289	44	4	8	42	1.55
79243--79276	10	3.5	10	84	8	52	11	0	14	73	1.10
79244--79286	19	2.4	17	92	7	68	13	0	11	74	1.07
86050--86087	14	2.6	15	80	19	53	34	0	21	44	1.52
90527--90594	24	2.8	24	81	0	82	36	13	25	25	1.92
98207--98231	13	1.9	13	100	0	50	36	0	16	48	1.46
103523--103682	26	6.2	26	82	0	126	28	18	23	29	1.98
103611--103731	25	4.8	25	79	5	127	21	20	26	31	1.98
105090--105775	340	2.0	345	87	2	1004	30	21	22	25	1.99
107847--108011	83	2.0	83	84	0	213	32	18	16	32	1.93
108485--108524	20	2.0	20	85	9	55	52	12	0	35	1.39
129010--129285	54	5.3	54	85	6	361	34	19	15	30	1.93
129010--129276	107	2.5	107	86	4	357	35	19	15	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132950--132983	17	1.9	18	94	5	61	35	0	11	52	1.38
137203--137265	33	1.9	33	86	0	90	41	22	7	28	1.82
137526--137583	22	2.6	23	80	5	64	58	20	1	18	1.48
145435--145501	16	3.9	16	72	14	53	61	0	2	35	1.12
152844--152889	22	2.1	22	100	0	92	34	13	23	28	1.92
152968--152997	13	2.3	13	94	0	51	53	3	26	16	1.59
154796--154834	14	2.8	15	85	14	57	69	0	0	30	0.89
155457--155501	23	2.0	23	86	0	63	31	15	20	33	1.93
163618--163681	33	1.9	34	90	3	103	50	12	12	25	1.75
163680--163708	13	2.1	14	93	6	51	62	6	3	27	1.37
164252--164419	84	2.0	83	90	3	268	33	16	19	30	1.94
164543--164582	17	2.3	17	91	4	62	67	5	2	25	1.23
164574--164602	11	2.5	12	94	5	51	62	0	0	37	0.96
164552--164619	29	2.3	29	85	5	93	64	1	0	33	1.02

Tables:   1

The End!