genome.fa.s12419.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012419.1 Kokia drynarioides strain JFW-HI SEQ_127423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174257

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558--657	36	2.8	36	82	0	128	26	25	14	35	1.93
30061--30094	6	5.7	6	100	0	68	17	82	0	0	0.67
34684--34736	26	2.0	26	100	0	106	32	11	30	26	1.91
39654--39698	23	1.9	24	95	4	83	26	15	8	48	1.74
47265--47300	18	1.9	19	88	5	56	44	2	22	30	1.67
50479--50559	17	4.8	17	82	8	103	48	2	1	48	1.23
50472--50560	6	15.3	6	67	26	50	48	2	1	48	1.21
50479--50561	34	2.4	34	93	0	148	48	2	1	48	1.22
50682--50747	20	3.2	22	81	14	63	56	6	0	37	1.24
50682--50747	21	3.2	21	81	12	66	56	6	0	37	1.24
72402--72431	14	2.1	14	100	0	60	30	13	23	33	1.93
72875--72933	20	2.9	20	82	12	59	54	3	3	38	1.34
73268--73301	3	10.7	3	93	6	50	64	0	0	35	0.94
76036--76062	3	9.0	3	100	0	54	66	0	0	33	0.92
80088--80146	31	1.9	31	85	0	82	45	13	8	32	1.74
90601--90649	21	2.3	21	89	3	71	22	0	6	71	1.08
91553--91594	21	2.0	21	86	13	59	23	2	2	71	1.10
97449--97479	14	2.2	14	94	0	53	48	6	3	41	1.45
103056--103085	2	15.5	2	93	6	53	50	0	0	50	1.00
103966--104030	27	2.4	27	89	0	94	26	32	24	16	1.96
103989--104044	27	2.1	27	82	0	67	33	33	19	12	1.89
105477--105526	26	1.9	26	91	0	82	36	0	6	58	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106060--106089	6	5.0	6	100	0	60	16	33	33	16	1.92
107901--108027	42	3.0	42	60	11	98	40	7	5	47	1.54
107861--108027	83	2.0	83	98	0	325	41	5	7	44	1.58
107868--107997	41	3.1	41	62	18	97	45	4	9	40	1.57
108132--108203	33	2.2	32	82	2	90	41	2	1	54	1.23
108145--108206	31	1.9	33	87	6	92	40	3	1	54	1.26
109083--109128	18	2.7	17	78	18	51	36	0	0	63	0.95
113998--114031	17	2.1	16	88	5	50	50	0	2	47	1.16
124992--125025	2	16.5	2	93	6	59	2	47	0	50	1.16
128245--128286	22	1.9	22	85	0	57	35	0	9	54	1.33
128267--128312	17	2.6	17	93	3	74	41	0	0	58	0.98
128267--128311	6	7.7	6	80	5	56	42	0	0	57	0.98
129008--129082	9	8.0	9	78	8	51	49	1	4	45	1.29
129008--129080	12	6.1	12	75	12	69	49	1	4	45	1.29
129034--129110	3	25.7	3	77	0	55	54	3	3	37	1.37
130181--130589	30	14.1	29	71	13	263	36	28	1	32	1.66
130171--130591	59	7.3	59	78	12	435	37	28	1	32	1.66
130468--130569	49	2.1	49	90	0	159	36	30	1	31	1.69
135777--135895	6	20.7	6	66	14	54	42	1	5	51	1.34
135771--135896	17	7.4	17	75	5	119	41	1	4	52	1.32
135773--135853	35	2.4	34	83	4	99	39	1	4	54	1.30
136531--136562	3	10.7	3	100	0	64	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137685--137889	30	7.0	30	77	10	167	40	25	0	33	1.63
137682--137873	59	3.3	57	75	5	170	41	26	1	31	1.63
137838--138066	29	7.9	29	76	7	216	31	27	8	32	1.86
137870--138092	58	3.8	57	82	4	250	29	26	8	34	1.87
140804--140883	41	2.0	41	89	0	124	31	17	28	22	1.97
142157--142186	2	15.0	2	92	0	51	46	0	0	53	1.00
149861--149889	2	14.5	2	100	0	58	0	48	0	51	1.00
150472--150509	5	7.6	5	96	0	58	34	39	5	21	1.76
151249--151276	14	2.0	14	100	0	56	28	21	0	50	1.49
152143--152575	29	14.7	29	65	19	116	35	6	25	32	1.81
152268--152362	30	3.2	29	74	4	91	32	5	28	33	1.80
152138--152479	59	5.8	59	79	6	329	33	6	26	32	1.83
152170--152537	176	2.1	176	82	5	449	36	6	24	32	1.81
152518--152576	30	2.0	29	83	12	75	30	6	25	37	1.82
153718--153803	3	28.7	3	100	0	172	33	0	0	66	0.92
154501--154542	19	2.2	20	87	12	61	30	4	16	47	1.67
154580--154617	18	2.1	18	95	0	67	57	5	2	34	1.35
154584--154638	6	9.3	6	80	4	67	52	1	3	41	1.29
154569--154652	41	2.0	42	84	6	109	54	4	3	36	1.39
154608--154652	17	2.6	18	89	3	65	55	2	4	37	1.32
154584--154646	23	2.7	23	85	7	65	55	1	4	38	1.31
155010--155835	206	4.0	206	89	1	1190	22	21	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156250--156363	50	2.3	50	100	0	228	33	19	11	35	1.87
156537--156762	50	4.5	50	76	8	201	16	28	17	38	1.91
156536--156774	100	2.4	100	81	6	313	17	27	17	37	1.93
157970--158052	17	4.8	17	72	12	53	2	14	3	79	0.97
157968--158048	27	3.0	26	75	16	67	1	16	3	79	0.95
157968--158066	6	16.7	6	71	14	62	3	14	4	78	1.01
157970--158046	32	2.5	30	83	10	93	1	14	3	80	0.92
158008--158048	20	2.0	20	90	0	64	0	19	0	80	0.71
162840--162897	28	2.1	28	96	0	107	29	6	34	29	1.83
162919--163406	59	8.4	59	83	6	539	34	6	26	31	1.83
162927--163017	29	3.1	29	73	17	80	36	7	25	30	1.84
162927--163021	30	3.2	30	73	18	90	35	7	26	30	1.84
162920--163406	116	4.2	117	80	7	535	34	6	26	32	1.83
163218--163359	28	4.9	29	71	19	91	34	4	26	33	1.78
162922--163453	175	3.0	171	83	8	592	35	6	25	31	1.83
163454--163514	28	2.1	29	82	11	72	37	0	22	39	1.55
163469--163534	29	2.3	29	79	10	73	40	0	27	31	1.56
164713--164742	3	10.0	3	100	0	60	33	0	0	66	0.92
165369--165398	11	2.6	11	94	5	51	20	0	23	56	1.42
165517--165566	6	8.5	6	77	4	57	56	0	4	40	1.18
165484--165578	17	5.4	18	79	5	97	56	4	3	35	1.34
173991--174047	17	3.5	16	76	23	57	56	0	1	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174152--174176	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1

The End!