Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012420.1 Kokia drynarioides strain JFW-HI SEQ_127424, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 133036
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Found at i:4363 original size:16 final size:15
Alignment explanation
Indices: 4342--4372 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
4332 ACCATGGCAA
4342 TTTGATAGGCAGAGTT
1 TTTGATAGGC-GAGTT
4358 TTTGATAGGCGAGTT
1 TTTGATAGGCGAGTT
4373 ACTCACGACG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.23, C:0.06, G:0.32, T:0.39
Consensus pattern (15 bp):
TTTGATAGGCGAGTT
Found at i:4537 original size:11 final size:11
Alignment explanation
Indices: 4523--4609 Score: 52
Period size: 11 Copynumber: 7.7 Consensus size: 11
4513 CAGTGAGAAT
4523 GAAAAAGAAAA
1 GAAAAAGAAAA
**
4534 GAAAATTAAAA
1 GAAAAAGAAAA
4545 -AAAAAG-AAA
1 GAAAAAGAAAA
* * *
4554 GGAAAAGTGAGA
1 GAAAAAG-AAAA
*
4566 GAAAAGAGCAAA
1 GAAAA-AGAAAA
**
4578 GAAAGTGAAAA
1 GAAAAAGAAAA
4589 GAAAGAGAGAAAA
1 GAAA-A-AGAAAA
4602 GAAAAAGA
1 GAAAAAGA
4610 TTAAAAGGAA
Statistics
Matches: 56, Mismatches: 14, Indels: 12
0.68 0.17 0.15
Matches are distributed among these distances:
9 3 0.05
10 9 0.16
11 20 0.36
12 13 0.23
13 11 0.20
ACGTcount: A:0.70, C:0.01, G:0.24, T:0.05
Consensus pattern (11 bp):
GAAAAAGAAAA
Found at i:4600 original size:31 final size:28
Alignment explanation
Indices: 4547--4603 Score: 78
Period size: 31 Copynumber: 1.9 Consensus size: 28
4537 AATTAAAAAA
*
4547 AAAGAAAGGAAAAGTGAGAGAAAAGAGC
1 AAAGAAAGGAAAAGAGAGAGAAAAGAGC
4575 AAAGAAAGTGAAAAGAAAGAGAGAAAAGA
1 AAAGAAAG-GAAAAG--AGAGAGAAAAGA
4604 AAAAGATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 8 0.32
29 6 0.24
31 11 0.44
ACGTcount: A:0.65, C:0.02, G:0.30, T:0.04
Consensus pattern (28 bp):
AAAGAAAGGAAAAGAGAGAGAAAAGAGC
Found at i:7587 original size:17 final size:17
Alignment explanation
Indices: 7548--7580 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7538 GACAACAAAT
7548 AAAATGCAAGGACAATA
1 AAAATGCAAGGACAATA
*
7565 AAAATGCAATGACAAT
1 AAAATGCAAGGACAAT
7581 TTAAATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.12, G:0.15, T:0.15
Consensus pattern (17 bp):
AAAATGCAAGGACAATA
Found at i:12596 original size:24 final size:24
Alignment explanation
Indices: 12563--12609 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
12553 ATCAAGAGTA
*
12563 AAAATTGTCAGTACAAATGTAATAC
1 AAAATTGTCAGAACAAAT-TAATAC
12588 AAAA-TGTCAGAACAAATTAATA
1 AAAATTGTCAGAACAAATTAATA
12610 AAAGATGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 12 0.57
25 4 0.19
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (24 bp):
AAAATTGTCAGAACAAATTAATAC
Found at i:15836 original size:17 final size:17
Alignment explanation
Indices: 15814--15852 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
15804 AGCATTAATA
15814 ATCTCTGTTTTTTCAAT
1 ATCTCTGTTTTTTCAAT
15831 ATCTCTGTTTTTTCAAT
1 ATCTCTGTTTTTTCAAT
15848 ATCTC
1 ATCTC
15853 CCAATCAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.18, C:0.21, G:0.05, T:0.56
Consensus pattern (17 bp):
ATCTCTGTTTTTTCAAT
Found at i:27377 original size:19 final size:17
Alignment explanation
Indices: 27353--27387 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
27343 TCAATTGAAA
27353 AAGAAAAATGAGAAAAAAG
1 AAGAAAAA-GA-AAAAAAG
27372 AAGAAAAAGAAAAAAA
1 AAGAAAAAGAAAAAAA
27388 ATTATGATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 2 0.12
19 8 0.50
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (17 bp):
AAGAAAAAGAAAAAAAG
Found at i:39963 original size:19 final size:19
Alignment explanation
Indices: 39913--39964 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
39903 AGGAGAGAAA
39913 TGAGAGAATAGAAGAGATGAT
1 TGAGA-AAT-GAAGAGATGAT
* *
39934 TGATAAATGAAGGGATGAT
1 TGAGAAATGAAGAGATGAT
*
39953 TGAGAAGTGAAG
1 TGAGAAATGAAG
39965 TTGAGGGCTC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 20 0.74
20 3 0.11
21 4 0.15
ACGTcount: A:0.44, C:0.00, G:0.35, T:0.21
Consensus pattern (19 bp):
TGAGAAATGAAGAGATGAT
Found at i:42786 original size:18 final size:19
Alignment explanation
Indices: 42754--42790 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
42744 GCAGGGAATC
42754 TTTTCCAAAACGTGCATTG
1 TTTTCCAAAACGTGCATTG
*
42773 TTTT-CAAAATGTGCATTG
1 TTTTCCAAAACGTGCATTG
42791 ACATGATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (19 bp):
TTTTCCAAAACGTGCATTG
Found at i:63208 original size:25 final size:25
Alignment explanation
Indices: 63167--63304 Score: 93
Period size: 25 Copynumber: 5.4 Consensus size: 25
63157 GCTTTCTAAT
* *
63167 TCTGGCTCATAAGAGTG-TATTTATG
1 TCTGGCTCGTAAAAGTGATA-TTATG
63192 TCTGGCTCGTAAAAGTGATATTATG
1 TCTGGCTCGTAAAAGTGATATTATG
* * *
63217 TCTGGCTCGTAAGAGCGAAATTCTAAT-
1 TCTGGCTCGTAAAAGTGATA-T-T-ATG
* * * * *
63244 TTTGGCTCATATAAGGGATATTCTG
1 TCTGGCTCGTAAAAGTGATATTATG
**
63269 TCTGGCTCGTATGAGTGATATT-TCG
1 TCTGGCTCGTAAAAGTGATATTAT-G
*
63294 TATGGCTCGTA
1 TCTGGCTCGTA
63305 TGAGCGATAT
Statistics
Matches: 90, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
24 2 0.02
25 67 0.74
26 4 0.04
27 15 0.17
28 2 0.02
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (25 bp):
TCTGGCTCGTAAAAGTGATATTATG
Found at i:63287 original size:77 final size:77
Alignment explanation
Indices: 63160--63324 Score: 196
Period size: 77 Copynumber: 2.2 Consensus size: 77
63150 GACAAAGGCT
* * *
63160 TTCTAATTCTGGCTCATAAGAGTGTATTTATGTCTGGCTCGTAAAAGTGATATTAT-GTCTGGCT
1 TTCTAATTTTGGCTCATAAGAGGGTATTTATGTCTGGCTCGTAAAAGTGATATT-TCGTATGGCT
63224 CGTAAGAGCGAAA
65 CGTAAGAGCGAAA
* **
63237 TTCTAATTTTGGCTCATATA-AGGG-ATATTCTGTCTGGCTCGTATGAGTGATATTTCGTATGGC
1 TTCTAATTTTGGCTCATA-AGAGGGTAT-TTATGTCTGGCTCGTAAAAGTGATATTTCGTATGGC
* *
63300 TCGTATGAGCGATA
64 TCGTAAGAGCGAAA
63314 TTCT--TTTTGGC
1 TTCTAATTTTGGC
63325 ATGTATGAGC
Statistics
Matches: 77, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
75 7 0.09
76 3 0.04
77 66 0.86
78 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.39
Consensus pattern (77 bp):
TTCTAATTTTGGCTCATAAGAGGGTATTTATGTCTGGCTCGTAAAAGTGATATTTCGTATGGCTC
GTAAGAGCGAAA
Found at i:63324 original size:25 final size:25
Alignment explanation
Indices: 63219--63354 Score: 123
Period size: 25 Copynumber: 5.4 Consensus size: 25
63209 ATATTATGTC
* *
63219 TGGCTCGTAAGAGCGAAATTCTAATTT
1 TGGCTCGTATGAGCGATATTCT--TTT
* * * * *
63246 TGGCTCATATAAGGGATATTCTGTC
1 TGGCTCGTATGAGCGATATTCTTTT
* * *
63271 TGGCTCGTATGAGTGATATT-TCGTA
1 TGGCTCGTATGAGCGATATTCT-TTT
63296 TGGCTCGTATGAGCGATATTCTTTT
1 TGGCTCGTATGAGCGATATTCTTTT
63321 TGGCAT-GTATGAGCGATATTCTTTT
1 TGGC-TCGTATGAGCGATATTCTTTT
*
63346 TGGCACGTA
1 TGGCTCGTA
63355 GCCAAACTTT
Statistics
Matches: 90, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
24 1 0.01
25 70 0.78
26 2 0.02
27 17 0.19
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.38
Consensus pattern (25 bp):
TGGCTCGTATGAGCGATATTCTTTT
Found at i:66635 original size:23 final size:23
Alignment explanation
Indices: 66608--67074 Score: 632
Period size: 23 Copynumber: 20.3 Consensus size: 23
66598 ATCTTAATTC
*
66608 TTTAAGCACAAATCATATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
66631 TTTAATCATAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
66654 TTTAAGCACAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
66677 TTTAATCATAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* **
66700 TTTGAGCACAAATCATGTTAATA
1 TTTAAGCACAAATCACATTAATA
66723 TTTAAGCACAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
66746 TTTGAGCACAAATCATATTAATA
1 TTTAAGCACAAATCACATTAATA
66769 TTTAAGCACAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
66792 TTTAATCATAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
66815 TTTAAGCATAAATCAAATTAATA
1 TTTAAGCACAAATCACATTAATA
* * **
66838 TATGAGCACAAATCATTTTAATA
1 TTTAAGCACAAATCACATTAATA
66861 TTTAAGCACAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
*
66884 TTTGAGCACAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
66907 TTTAAGCATAAAACACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
66930 TTTGAGCACAAATCATATTAATA
1 TTTAAGCACAAATCACATTAATA
*
66953 TTTAAGAACAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
66976 TTTAAGCATAAGTCACATTAATA
1 TTTAAGCACAAATCACATTAATA
* *
66999 CTTAAGC-CTAAATCACATTAAAA
1 TTTAAGCAC-AAATCACATTAATA
* * *
67022 TTTAATCATAAATCATATTAATA
1 TTTAAGCACAAATCACATTAATA
67045 -TTAAGCACAAATCACATTAATA
1 TTTAAGCACAAATCACATTAATA
67067 TTTAAGCA
1 TTTAAGCA
67075 TAGATATCAG
Statistics
Matches: 383, Mismatches: 58, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
22 19 0.05
23 364 0.95
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.34
Consensus pattern (23 bp):
TTTAAGCACAAATCACATTAATA
Found at i:68973 original size:48 final size:48
Alignment explanation
Indices: 68789--68958 Score: 286
Period size: 48 Copynumber: 3.5 Consensus size: 48
68779 TTAAGTGTTT
* * * *
68789 TTTTTTTTGTTAATTGCATCTTTGTTTAATAATTTGCATCATTAAGTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAATAATTTGCATTATTAACTG
*
68837 TTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCATTATTAACTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAATAATTTGCATTATTAACTG
*
68885 TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATTTGCATTATTAACTG
1 TTTTGTTTGTTAAATGCATCTTTGTTTAATAATTTGCATTATTAACTG
68933 TTTTGTTTGTTAAATGCATCTTTGTT
1 TTTTGTTTGTTAAATGCATCTTTGTT
68959 AAATGCCTTG
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 115 1.00
ACGTcount: A:0.22, C:0.09, G:0.14, T:0.55
Consensus pattern (48 bp):
TTTTGTTTGTTAAATGCATCTTTGTTTAATAATTTGCATTATTAACTG
Found at i:76078 original size:30 final size:31
Alignment explanation
Indices: 76005--76085 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 31
75995 AATTGAATAG
*
76005 TAAGTAGAG-GACTATTTTGTCACTTTTCGA
1 TAAGTTGAGTGACTATTTTGTCACTTTTCGA
* *
76035 TAACTTTAGTGACTATTTTGTCACATTTTC-A
1 TAAGTTGAGTGACTATTTTGTCAC-TTTTCGA
*
76066 -AAGTTGAGTGACTGTTTTGT
1 TAAGTTGAGTGACTATTTTGT
76086 TAAATGCAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
30 23 0.53
31 15 0.35
32 5 0.12
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (31 bp):
TAAGTTGAGTGACTATTTTGTCACTTTTCGA
Found at i:85156 original size:41 final size:41
Alignment explanation
Indices: 85111--85218 Score: 189
Period size: 41 Copynumber: 2.6 Consensus size: 41
85101 TTGGGAAAGT
85111 GCCGCTATTGCTCTGACCTTTAGCGGTGCTTGCCCATAAGC
1 GCCGCTATTGCTCTGACCTTTAGCGGTGCTTGCCCATAAGC
85152 GCCGCTATTGCTCTGACCTTTAGCGGTGCTTGCCCATAAGC
1 GCCGCTATTGCTCTGACCTTTAGCGGTGCTTGCCCATAAGC
* * *
85193 GCTGCTATTGCTCTAATCTTTAGCGG
1 GCCGCTATTGCTCTGACCTTTAGCGG
85219 CGCTATTTCT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 64 1.00
ACGTcount: A:0.15, C:0.30, G:0.24, T:0.31
Consensus pattern (41 bp):
GCCGCTATTGCTCTGACCTTTAGCGGTGCTTGCCCATAAGC
Found at i:85176 original size:24 final size:24
Alignment explanation
Indices: 85111--85176 Score: 56
Period size: 24 Copynumber: 3.0 Consensus size: 24
85101 TTGGGAAAGT
85111 GCCGCTATTGCTCTGACCTTTAGC
1 GCCGCTATTGCTCTGACCTTTAGC
* * *
85135 G--G----TGCT-TGCCCATAAGC
1 GCCGCTATTGCTCTGACCTTTAGC
85152 GCCGCTATTGCTCTGACCTTTAGC
1 GCCGCTATTGCTCTGACCTTTAGC
85176 G
1 G
85177 GTGCTTGCCC
Statistics
Matches: 29, Mismatches: 6, Indels: 14
0.59 0.12 0.29
Matches are distributed among these distances:
17 9 0.31
18 4 0.14
19 1 0.03
22 1 0.03
23 4 0.14
24 10 0.34
ACGTcount: A:0.14, C:0.32, G:0.24, T:0.30
Consensus pattern (24 bp):
GCCGCTATTGCTCTGACCTTTAGC
Found at i:86128 original size:46 final size:46
Alignment explanation
Indices: 86061--86152 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
86051 TATTATGTTG
86061 TTAGTGTTTAGCACTACTTAACCTTATATCTTATCATATATGGTGC
1 TTAGTGTTTAGCACTACTTAACCTTATATCTTATCATATATGGTGC
*
86107 TTAGTGTTTTGCACTACTTAACCTTATATCTTATCATATATGGTGC
1 TTAGTGTTTAGCACTACTTAACCTTATATCTTATCATATATGGTGC
86153 CGATAAATTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.25, C:0.17, G:0.13, T:0.45
Consensus pattern (46 bp):
TTAGTGTTTAGCACTACTTAACCTTATATCTTATCATATATGGTGC
Found at i:87296 original size:216 final size:217
Alignment explanation
Indices: 86426--92112 Score: 5598
Period size: 215 Copynumber: 26.5 Consensus size: 217
86416 ATTTAAATAG
* * * *
86426 ACCGAAGTTATGAATGAACTCGTAAAAGTTTGACAAGATCGGAAGTTTGTCCAAGAACTAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * *
86491 GAAATAATTCTCACGTAAATAAGATTTAAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* ** ** *
86556 TATTTAGACCAAATGAT-ATGATTTCTCGAGCATGGAATGTTTAGAAAATT-TCTCAAAGAAATG
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGT-TGGAAGGAATG
*
86619 GATCGTCTTGAATAATTTAAGGA
195 GATCGTCTTGAATACTTTAAGGA
* * * * * * ** **
86642 A-GGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTTGAAAGTTTGTTAAAGAATAAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * * *
86706 GAAATAATTCTCATGTCAATAAGTTTTTAATCCAAAAACCAAAACTTTTTTA-AAATATGACAAT
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAA-ATGACAAA
** * ** * * ** * **
86770 CTATTTAGACCAGTTGATG-CGATTTCAAGATCATGGAATATTCAAAAAATTGATCTAAGG-AT-
130 CTATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAATG
* *
86832 --T-GTCTTGAATAATTTAATGA
195 GATCGTCTTGAATACTTTAAGGA
* * *
86852 ACCGAAGTTATAAAAAAACTCGTAAAAGTTTGAAAAGATCGAAAGTTCGTCCAAGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * *
86917 GAAACAATTCTCACGTAAATAAGTTTTTTTAATTTAAACACCAAAACTTGTTTACAAAATGACAA
66 GAAATAATTCTCACGTAAATAAG--ATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
* * * * * * *
86982 ACTATTTAGACCGAATGAT-ATGATTTCCCGAGCATGAAATGTTTGAAAAATTGCTCGAAGAAAT
129 ACTATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAAT
* *
87046 GGATCGTCTTGAATACTCTAACGA
194 GGATCGTCTTGAATACTTTAAGGA
* * * *
87070 ACCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGATCGAAAGTTCGTCCAAGAACCAAGAAA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
**
87135 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * * * *
87200 TATTTAGACCAAATGATGCT-ATTTCCCGTGCACGGAATGCTCGGAAAATTATTGGTAGGAATGT
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAATGG
*
87264 ATCATCTTGAATACTTTAAGGA
196 ATCGTCTTGAATACTTTAAGGA
* * * * * * *
87286 ACCAAAGTTATAAAAGAACTCGTAAAATTTTGGCTAGTTCGGAAGTTCGTCAAAGAACCAAGAGT
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * * * *
87351 GAAACAATTCTCACATAAATAAAATTTTAATTCATACACAAAAACATGTTTACAAATTGACAAAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * * * * **
87416 TATGTAAACCAAATG-TTATGA-TTCTCGAGCATGGAACGTTTGAAAAATTGCAGGAAGGAATGG
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAATGG
* * *
87479 ATCGCCTTAAATACTGTAAGGA
196 ATCGTCTTGAATACTTTAAGGA
* ** * * * * *
87501 ACCAAAGTTACGAATGAACTCGTAAAACTTTGACAAGATCAGAAGTTCGTCCATGAACAAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * *
87566 GAAATAACTCTCACGTAAATAAGATTTAAATTCAAAGACCAAAAGTTGTTTAGAAAATAACAAAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
** * *
87631 TATTTAGACCAAATGAT-ATGATTTCCCGAGCATGGAATGTTTAGAAAATT-TCTCGAAGAAATG
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGT-TGGAAGGAATG
*
87694 GATCGTCTTGGATACTTTAAGGA
195 GATCGTCTTGAATACTTTAAGGA
* * * * * *
87717 A-GGAAGTTATAAAAGAACTGGTAAAAGTTTGACAAGTTCGAAAGTTCGTCAAAGAATCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
87781 GAAATAATTCTCACGTAAATAAGTTTTTAATCCAAAAACCGAAACTTTTTTA-AAATATGACAAT
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAA-ATGACAAA
* ** * ** **
87845 CTATTTAGACCAAATGATG-CGATTTCAAGAGCATGGAATATTC--AAAA-AATT-GATCGAA-G
130 CTATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAATG
* * *
87904 GATCGTCTAGAATAATTTAATGA
195 GATCGTCTTGAATACTTTAAGGA
* * * * *
87927 ACAGAAGTTATAGAAGAACTCGTAAAAGTTTGAGAAGATCGGAAGTTCGTCCAAGAACCAATAAA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * * *
87992 GAAAAAATTCTCACATAAATAAGTTTTTTATTTAAAAACCAGAACTTGTTTACAAAATGAC-AAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * ** *
88056 TATTTAGATCAAATGATG-TGATTTCCCGAGCAAGGAATGTTCAGAAAAATGCTT--TTGGAAAG
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTG-TTGGAAGGAATG
* **
88118 TATCGTCTCAAATACTTTAAGGA
195 GATCGTCTTGAATACTTTAAGGA
* * * * * *
88141 ACCGGAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGGAAGTTCGTCAAAGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * ** *
88206 GAAACAATTCTCACGTAAATAAGATTTTAATTCATACAAAAAAACTTGTTTACAAATTGACAAAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * ** *
88271 TATTTAAACCAAATTAT-ATGATTTCTCGAGCATGGAATGTTCAGAAAATTGCAGGAAAGAATGG
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAATGG
* *
88335 ATCATCTTGTATACTTTAAGGA
196 ATCGTCTTGAATACTTTAAGGA
* * * * * * * ***
88357 ATCGAAGTTATGAAAGAACTTGTAAATGTTTGACAAGATCTGAAGTTCATCAAAG-AGTTA-AGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
88420 GAAATAATTCTCATGCAAATAAGA-TTAAAATCAAAGACCAAAAGTTGCTTACAAAATGAC-AAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * * * * * *
88483 TATTTAGATCAAATGATG-TGATTTCCCAAGCAAGTATTGCTT-GGAAAAGTGCTCGAAGGAAAG
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATG-TTCGGAAAATTGTTGGAAGGAATG
* * *
88546 TATCGTCATCAATACTTTAAGGA
195 GATCGTCTTGAATACTTTAAGGA
* *
88569 ACCGAAGTTATACAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * *
88633 GAAATAATTCTCACATAAATAAGTTTTTAATCCAAGGACCAAAACTTGTTTGA-AAAATGAGAAA
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTT-ACAAAATGACAAA
* ** * * * * *
88697 CTATTTAGACCAAATGATG-CGA---CAAGAGCATGTAATATTCGGAAATTTGAT-CATAGGAAT
130 CTATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGA-AGGAAT
* *
88757 GGATCGTCTTGAATAATTTAATGA
194 GGATCGTCTTGAATACTTTAAGGA
* * * * * *
88781 ATCGAAGTTATAAAAGAAATCGTAAAAGTTTTACAAGATCGAAAATTCGTCCAACAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
** * * *
88846 GAAGCAATTCTCACGTAAATAAGTTTTTAATTTAAACACCAAAACTTGTTTACAAAATGACAAAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * ** *
88911 TATTTAGATCGAATGATG-TGTTTTCCCGAGCATGAAATGTTCAAAAAAATGTTGGAAGGAATGG
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAATGG
88975 ATCGTCTTGAATACTTTAAGGA
196 ATCGTCTTGAATACTTTAAGGA
* * * * *
88997 ACCGAAGCTATAAAAGAACTAGTAAAAGTTTGATAAGATCGAAAGTTCGTCCAAGAACCAAAAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
**
89062 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * * *
89127 TATTTAGACCAAATGATGCT-ATTTACCGTA-CAGGGAATGCTT-GAAAAATTATTGGTAGGAAT
131 TATTTAGACCAAATGATGATGATTTCCCG-AGCATGGAATG-TTCGGAAAATTGTTGGAAGGAAT
89189 GGATCGTCTTGAATACTTTAAGGA
194 GGATCGTCTTGAATACTTTAAGGA
* * * * *
89213 ACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGGATGTTCGTCAAAGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * * * *
89278 GAAACATTTTTCACGTAAATAAGATTGTAATTCATACACAAAAACTTGTTTACAAATTGACAAAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * ** ** * * **
89343 TATTTAAATCAAATGAT-ATGATTTCCTAAGTGTGGAATGTTTGAAAAATTGCAGGAAGGAATGG
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAATGG
* *
89407 ATCGTCTTGAATACTTTGATGA
196 ATCGTCTTGAATACTTTAAGGA
* * * *
89429 ACCGAAGTTATGAATGAAGTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACTAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
89494 GAAATAATTCTCACCTAAATAAGATTTAAATTCAAAGTCCAAAAGTTGTTTAGAAAATGACAAAT
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * ** * *
89559 TATTTAGACCAAATGAT-ATGATTTCCCAAGCATCGAATGTTTAGAAAATT-TCTCGAAGAAATG
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGT-TGGAAGGAATG
*
89622 GATCATCTTGAATACTTTAAGGA
195 GATCGTCTTGAATACTTTAAGGA
* * * * *
89645 A-GGAAGTTATAAAAGAACGT-GTAAAAGTTTGACAAGTTCGAAAGTTCGTCAAAGAATCAAGAG
1 ACCGAAGTTATAAAAGAAC-TCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAG
* * * *
89708 AGAAATAATTCTCACGTAAATAAGTTTTTAATCCAAAAACCAAAACTTTTTTA-AAACATGACAA
65 AGAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAA-ATGACAA
* * * ** * ** * *
89772 TCTATTTAGACCAAATGAT-TTAATTTCAAGAGCATGGAATATTCAAAAAATTGATCGAA-G--T
129 ACTATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAAT
* * *
89833 -TATCGTCTTGAATAATTTAATGA
194 GGATCGTCTTGAATACTTTAAGGA
* *
89856 ACCGAAGTTATAAAAGAACTTGTAAAAGTTTGAAAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * *
89921 GAAACAATTCTCACGTAAATAAGTTTTTCAATTTAAAAACCAAAACTTGTTTACAAAATGAC-AA
66 GAAATAATTCTCACGTAAATAAGATTTT-AATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
* * * * * *
89985 CTATTTAGATCAAATGATG-TGATTTCCAGAGCAAGGAATGCTCAGAAAATTGCTTTTGAA--AA
130 CTATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTG--TTGGAAGGAA
* *
90047 -GTATCGTCTTAAATACTTTAAGGA
193 TGGATCGTCTTGAATACTTTAAGGA
* * * * * * * *
90071 ACCAAAGTTATAAAAGAACTAAG-AAAAGTTTGACTAGTTTGGAAGTTCATCAAAGAACTAAGAG
1 ACCGAAGTTATAAAAGAACT-CGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAG
* * * * *
90135 AGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACAAAAACTTGTTTACAAATTGACAAA
65 AGAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
* * * *
90200 CTATTTAAACCAAATGAT-ATGATTTCCCGAGCATGGAATGTTAGGAAAATTGTAGGAAAGAATG
130 CTATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAATG
*
90264 GATCATCTTGAATACTTTAAGGA
195 GATCGTCTTGAATACTTTAAGGA
* * * * * * *
90287 ATCAAAGTTGTGAAAGAACTCGTAAAAGTTTGACAAGATC-GAATGTTTG-GCAGAGAACTAA-A
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAA-GTTCGTCCA-AGAACCAAGA
* * * * *
90349 -AGAAATAATTCTCAAGTAGATAAGA-TTAAATTCAAAGACCAAAAGTTGTTTACAAAAATTAC-
64 GAGAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTAC-AAAATGACA
* * * * * * ** * * *
90411 AACTATTTAGATCAAATGATG-CGATTTCCCAAGCAAGTATTGTTTTGAAAAGTGCTCGAAGGAA
128 AACTATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAA
* * *
90475 AGTATCGTCTTCAATACTTTAAGGA
193 TGGATCGTCTTGAATACTTTAAGGA
* *
90500 ACCGAAGTTATACAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
90564 GAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAACTTTTTTAAAAAATGAGAAAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* ** * * *
90629 TATTTAGACCAATTGATG-TGATTTCAAGAGAATGGAATATTCGGAAATTTGATT-GAAGGAATG
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTG-TTGGAAGGAATG
* * *
90692 GATTGTCTTGAATAATTTAATGA
195 GATCGTCTTGAATACTTTAAGGA
* * * * * * *
90715 ACCAAAGTTATAAAAGACCTTGTAAATGTTTTATAAGATCGAAAGTTCGTCCAAGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * *
90780 GAAACAATTCTCACGTAAATAAG-TTTCTAATTTAAACACCAGAACTTGTTTACAAAATGAC-AA
66 GAAATAATTCTCACGTAAATAAGATTT-TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
* * * * ** *
90843 CTATTTAGATCAAATGATG-TGATTTCCCGAGCAAGGAATGTTCAGAAAATTACTT--TTGGAAA
130 CTATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATT-GTTGGAAGGAAT
* * * *
90905 GTATCGTCTTAAATACTGTAAGAA
194 GGATCGTCTTGAATACTTTAAGGA
* * * * *
90929 ACCGAAGTTATAAAAGAACTCATAAAAGTTTGACTAA-TTTGGAAGTTCGTCAAAGAACGAAGAG
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC-AAGATCGGAAGTTCGTCCAAGAACCAAGAG
* * * * * *
90993 AGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACAAAAACTTGTTTAGAAATTGACAAA
65 AGAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
* * ** *
91058 CTATTTAAACCAAATGAT-ATGATTTCCCGAGCATGGAATGTT-TGATAAATTGCAGGAAAGAAT
130 CTATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGA-AAATTGTTGGAAGGAAT
* *
91121 AGATCATCTTGAATACTTTAAGGA
194 GGATCGTCTTGAATACTTTAAGGA
* * * * * * *
91145 ACCAAAGATATGAAAGAACTCGTAAAAGTTTGACAAGATTGCAAGTTCGTCAAAGAA-CTA-AGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * *
91208 GAAATAATTCTCACGTAAATAAGA-TTAAATTCAAAGACCAAAAGTTGTGTACAAAATGAC-AAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * * * * * * * * *
91271 TATTTAGATCAAATGATG-CGATTTCCCAAGCAAGTATTGTTTGGAAAAGTGCTCGAAGGAAAGA
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAATGG
* * *
91335 ATCATCTTCAATACTTTGAGGA
196 ATCGTCTTGAATACTTTAAGGA
* *
91357 ACCGAAGTTATACAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
91421 GAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAACTTCTTTAAAAAATGAGAAAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
** * * *
91486 TATTTAGACCAAATGATGCA--ATTTCAAGAGCATGGAATATTC-TAAAATTTGATGGAAGGAAT
131 TATTTAGACCAAATGATG-ATGATTTCCCGAGCATGGAATGTTCGGAAAA-TTGTTGGAAGGAAT
* * * *
91548 GGATTGTCTTGAATAATTGAATGA
194 GGATCGTCTTGAATACTTTAAGGA
* * * * *
91572 ACCGAAGTTATAAAAGAACCCGTAAAATTTTTACAAGATCGAAAGTTCATCCAAGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * *
91637 GAAACAATTCTCACGTAAATAAGTTTTTAATTTAAACACCAAAACTTGTTTACAAAATGAC-AAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
** * * ** *
91701 TATTTAGATAAAATGATG-TGATTTCCCGAGCAAGGAATGTTCAGAAAATTGCTT--TTGGAAAG
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTG-TTGGAAGGAATG
* * *
91763 TATCGTCTTAAATACTGTAAGGA
195 GATCGTCTTGAATACTTTAAGGA
* * * * *
91786 ACCGAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGGAAGTTCGTCAAAGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * ** *
91851 GAAACAATTCTCACGTAAATAAGATTTTAATTCATACATAAAAACTTGTTTACAAATTGACAAAC
66 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* ** * ** * *
91916 TATTTAAACCAAATGAT-ATGATTTCCCGATTATGGAATGTTCAGAAAATTGCAGGAATGAATAG
131 TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAATGG
* *
91980 ATCATCTTGAATATTTTAAGGA
196 ATCGTCTTGAATACTTTAAGGA
* * * * * *
92002 A-TGAAAGATATGAAAGAACTCGTAAAAGTTTGACAAGATCGAAAGTTCGTCAAAGAA-CTA-AG
1 ACCG-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAG
* * * *
92064 AGAAATAATTCTCACGTAATTAAGA-TTAAATTCGAAGACCAAAAGTTGT
65 AGAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGT
92113 GATACGAGTC
Statistics
Matches: 4457, Mismatches: 899, Indels: 233
0.80 0.16 0.04
Matches are distributed among these distances:
210 78 0.02
211 209 0.05
212 455 0.10
213 455 0.10
214 625 0.14
215 1265 0.28
216 1265 0.28
217 7 0.00
218 98 0.02
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (217 bp):
ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
TATTTAGACCAAATGATGATGATTTCCCGAGCATGGAATGTTCGGAAAATTGTTGGAAGGAATGG
ATCGTCTTGAATACTTTAAGGA
Found at i:92113 original size:857 final size:857
Alignment explanation
Indices: 86426--92112 Score: 6207
Period size: 857 Copynumber: 6.6 Consensus size: 857
86416 ATTTAAATAG
* * * *
86426 ACCGAAGTTATGAATGAACTCGTAAAAGTTTGACAAGATCGGAAGTTTGTCCAAGAACTAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * *
86491 GAAATAATTCTCACGTAAATAAGATTTAAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAAC
66 GAAACAATTCTCACGTAAATAAGATTTTAATTCAAACACCAAAACTTGTTTACAAAATGACAAAC
* * * * * ** * *
86556 TATTTAGACCAAATGATATGATTTCTCGAGCATGGAATGTTTAGAAAATTTCTCAAAGAAATGGA
131 TATTTAGACCAAATGATGTGATTTCCCGAGCAAGGAATGTTCAGAAAATTGCTTTAGGAAA-GTA
* * * * * *
86621 TCGTCTTGAATAATTTAAGGAA-GGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTTGAAA
195 TCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGGAA
* * * * * * * * * * *
86685 GTTTGTTAAAGAATAAAGAGAGAAATAATTCTCATGTCAATAAGTTTTTAATCCAAAAACCAAAA
260 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACAAAAA
* * * ** ** ** * *
86750 CTTTTTTA-AAATATGACAATCTATTTAGACCAGTTGATGCGATTTCAAGATCATGGAATATTCA
325 CTTGTTTACAAAT-TGACAAACTATTTAAACCAAATGATATGATTTCCCGAGCATGGAATGTT-A
* *** * * * * *
86814 AAAAATT----GATCTAA-GGATTGTCTTGAATAATTTAATGAACCGAAGTTATAAAAAAACTCG
388 GAAAATTGCAGGAAAGAATGGATCGTCTTGAATACTTTAAGGAA-CGAAGTTATGAAAGAACTCG
* * * *
86874 TAAAAGTTTGAAAAGATCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
452 TAAAAGTTTGACAAGATCGAAAGTTCGTCAAAGAA-CTAGAGAGAAATAATTCTCACGTAAATAA
* * * * * * **
86939 GTTTTTTTAATTTAAACACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCGAATGATATG
516 G---ATTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AACTATTTAGACCAAATGATGCG
* * * * *
87004 ATTTCCCGAGCATGAAATGTTTGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTCTAACG
577 ATTTCCCAAGCATGTAATGTTTGGAAAATTGCTCGAAGAAA-GGATCGTCTTGAATACTTTAAGG
* * *
87069 AACCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGATCGAAAGTTCGTCCAAGAACCAAGAA
641 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGAAAGTTCGTCCAAGAACCAAGAG
* * * ** *
87134 AGAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAA
706 AGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAACTTGTTTAAAAAATGACAAA
** * * ** ** *
87199 CTATTTAGACCAAATGATGCT-ATTTCCCGTGCACGGAATGCTCGGAAAATT-ATTGGTAGGAAT
771 CTATTTAGACCAAATGATG-TGATTTCAAGAGCATGGAATATTCAAAAAATTGA-TGGAAGGAAT
* * *
87262 GTATCATCTTGAATACTTTAAGGA
834 GGATCGTCTTGAATAATTTAAGGA
* * * * * * *
87286 ACCAAAGTTATAAAAGAACTCGTAAAATTTTGGCTAGTTCGGAAGTTCGTCAAAGAACCAAGAGT
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
87351 GAAACAATTCTCACATAAATAAAATTTTAATTCATACACAAAAACATGTTTACAAATTGACAAAC
66 GAAACAATTCTCACGTAAATAAGATTTTAATTCAAACACCAAAACTTGTTTACAAAATGACAAAC
* * * * * * * * *** * *
87416 TATGTAAACCAAATGTTATGA-TTCTCGAGCATGGAACGTT-TGAAAAATTGCAGGAAGGAATGG
131 TATTTAGACCAAATGATGTGATTTCCCGAGCAAGGAATGTTCAG-AAAATTGC-TTTAGGAAAGT
* * * ** * * * * **
87479 ATCGCCTTAAATACTGTAAGGAACCAAAGTTACGAATGAACTCGTAAAACTTTGACAAGATCAGA
194 ATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGGA
* * * * * * * *
87544 AGTTCGTCCATGAACAAAGAGAGAAATAACTCTCACGTAAATAAGATTTAAATTCAAAGACCAAA
259 AGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACAAAA
* * * * *
87609 AGTTGTTTAGAAAATAACAAACTATTTAGACCAAATGATATGATTTCCCGAGCATGGAATGTTTA
324 ACTTGTTTACAAATTGACAAACTATTTAAACCAAATGATATGATTTCCCGAGCATGGAATG-TTA
* ** * * * *
87674 GAAAATTTCTCG-AAGAAATGGATCGTCTTGGATACTTTAAGGAAGGAAGTTATAAAAGAACTGG
388 GAAAATTGCAGGAAAG-AATGGATCGTCTTGAATACTTTAAGGAACGAAGTTATGAAAGAACTCG
* *
87738 TAAAAGTTTGACAAGTTCGAAAGTTCGTCAAAGAATCAAGAGAGAAATAATTCTCACGTAAATAA
452 TAAAAGTTTGACAAGATCGAAAGTTCGTCAAAGAA-CTAGAGAGAAATAATTCTCACGTAAATAA
* * * * * * *
87803 GTTTTTAATCCAAAAACCGAAACTTTTTTA-AAATATGACAATCTATTTAGACCAAATGATGCGA
516 G-ATTAAATTCAAAGACCAAAAGTTGTTTACAAA-ATGACAA-CTATTTAGACCAAATGATGCGA
* * * *** * * * *
87867 TTT-CAAGAGCATGGAATATTCAAAAAATTGATC---G-AAGGATCGTCTAGAATAATTTAATGA
578 TTTCCCA-AGCATGTAATGTTTGGAAAATTGCTCGAAGAAAGGATCGTCTTGAATACTTTAAGGA
* * * * * *
87927 ACAGAAGTTATAGAAGAACTCGTAAAAGTTTGAGAAGATCGGAAGTTCGTCCAAGAACCAATAAA
642 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGAAAGTTCGTCCAAGAACCAAGAGA
* * ** * * *
87992 GAAAAAATTCTCACATAAATAAGTTTTTTATTTAAAAACCAGAACTTGTTTACAAAATGAC-AAC
707 GAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAACTTGTTTAAAAAATGACAAAC
* ** * * * *** * *
88056 TATTTAGATCAAATGATGTGATTTCCCGAGCAAGGAATGTTCAGAAAAA-TGCT-TTTGGAAAGT
772 TATTTAGACCAAATGATGTGATTTCAAGAGCATGGAATATTCA-AAAAATTGATGGAAGGAATGG
** *
88119 ATCGTCTCAAATACTTTAAGGA
836 ATCGTCTTGAATAATTTAAGGA
* * * * * *
88141 ACCGGAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGGAAGTTCGTCAAAGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* ** *
88206 GAAACAATTCTCACGTAAATAAGATTTTAATTCATACAAAAAAACTTGTTTACAAATTGACAAAC
66 GAAACAATTCTCACGTAAATAAGATTTTAATTCAAACACCAAAACTTGTTTACAAAATGACAAAC
* * * * *
88271 TATTTAAACCAAATTATATGATTTCTCGAGCATGGAATGTTCAGAAAATTGC---AGGAAAGAAT
131 TATTTAGACCAAATGATGTGATTTCCCGAGCAAGGAATGTTCAGAAAATTGCTTTAGGAAAG--T
* ** * * * * * *
88333 GGATCATCTTGTATACTTTAAGGAATCGAAGTTATGAAAGAACTTGTAAATGTTTGACAAGATCT
194 --ATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAG-TTT
* *** * * * * * * * *
88398 -GAAGTTCATCAAAG-AGTTA-AGAGAAATAATTCTCATGCAAATAAGA-TTAAAATCAAAGACC
256 GGAAGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACA
* * * * * * * * * *
88459 AAAAGTTGCTTACAAAATGAC-AACTATTTAGATCAAATGATGTGATTTCCCAAGCAAGTATTGC
321 AAAACTTGTTTACAAATTGACAAACTATTTAAACCAAATGATATGATTTCCCGAGCATGGAATG-
* * ** * * * * *
88523 TTGGAAAAGTGCTCGAAGGAAAGTATCGTCATCAATACTTTAAGGAACCGAAGTTAT-ACAAGAA
385 TTAGAAAATTGCAGGAAAGAATGGATCGTCTTGAATACTTTAAGGAA-CGAAGTTATGA-AAGAA
* * * * *
88587 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAGAACCAAGAGAGAAATAATTCTCACATAA
448 CTCGTAAAAGTTTGACAAGATCGAAAGTTCGTCAAAGAA-CTAGAGAGAAATAATTCTCACGTAA
* * * * * *
88651 ATAAGTTTTTAATCCAAGGACCAAAACTTGTTTGA-AAAATGAGAAACTATTTAGACCAAATGAT
512 ATAAG-ATTAAATTCAAAGACCAAAAGTTGTTT-ACAAAATGA-CAACTATTTAGACCAAATGAT
* * * * * * *
88715 GCGA----CAAGAGCATGTAATATTCGGAAATTTGATC-ATAGGAATGGATCGTCTTGAATAATT
574 GCGATTTCCCA-AGCATGTAATGTTTGGAAAATTGCTCGA-A-GAAAGGATCGTCTTGAATACTT
* * * * * *
88775 TAATGAATCGAAGTTATAAAAGAAATCGTAAAAGTTTTACAAGATCGAAAATTCGTCCAACAACC
636 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGAAAGTTCGTCCAAGAACC
** * ** * *
88840 AAGAGAGAAGCAATTCTCACGTAAATAAGTTTTTAATTTAAACACCAAAACTTGTTTACAAAATG
701 AAGAGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAACTTGTTTAAAAAATG
* * * ** * * * *
88905 ACAAACTATTTAGATCGAATGATGTGTTTTCCCGAGCATGAAATGTTCAAAAAAATGTTGGAAGG
766 ACAAACTATTTAGACCAAATGATGTGATTTCAAGAGCATGGAATATTCAAAAAATTGATGGAAGG
*
88970 AATGGATCGTCTTGAATACTTTAAGGA
831 AATGGATCGTCTTGAATAATTTAAGGA
* * * * *
88997 ACCGAAGCTATAAAAGAACTAGTAAAAGTTTGATAAGATCGAAAGTTCGTCCAAGAACCAAAAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * **
89062 GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAAC
66 GAAACAATTCTCACGTAAATAAGATTTTAATTCAAACACCAAAACTTGTTTACAAAATGACAAAC
* * * *
89127 TATTTAGACCAAATGATGCT-ATTTACCGTA-CAGGGAATGCTTGA-AAAATT-ATTGGTAGGAA
131 TATTTAGACCAAATGATG-TGATTTCCCG-AGCAAGGAATG-TTCAGAAAATTGCTT--TAGGAA
* * * * *
89188 TGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTC
191 AGTATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTT
* * * * *
89253 GGATGTTCGTCAAAGAACCAAGAGAGAAACATTTTTCACGTAAATAAGATTGTAATTCATACACA
256 GGAAGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACA
* ** **
89318 AAAACTTGTTTACAAATTGACAAACTATTTAAATCAAATGATATGATTTCCTAAGTGTGGAATGT
321 AAAACTTGTTTACAAATTGACAAACTATTTAAACCAAATGATATGATTTCCCGAGCATGGAATGT
* * * * * *
89383 TTGAAAAATTGCAGGAAGGAATGGATCGTCTTGAATACTTTGATGAACCGAAGTTATGAATGAAG
386 TAG-AAAATTGCAGGAAAGAATGGATCGTCTTGAATACTTTAAGGAA-CGAAGTTATGAAAGAAC
* * *
89448 TCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACTAAGAGAGAAATAATTCTCACCTAAA
449 TCGTAAAAGTTTGACAAGATCGAAAGTTCGTCAAAGAACT-AGAGAGAAATAATTCTCACGTAAA
* * * **
89513 TAAGATTTAAATTCAAAGTCCAAAAGTTGTTTAGAAAATGACAAATTATTTAGACCAAATGATAT
513 TAAGA-TTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AACTATTTAGACCAAATGATGC
* * *
89578 GATTTCCCAAGCATCG-AATGTTTAGAAAATTTCTCGAAGAAATGGATCATCTTGAATACTTTAA
576 GATTTCCCAAGCAT-GTAATGTTTGGAAAATTGCTCGAAGAAA-GGATCGTCTTGAATACTTTAA
* * * *
89642 GGAA-GGAAGTTATAAAAGAACGT-GTAAAAGTTTGACAAGTTCGAAAGTTCGTCAAAGAATCAA
639 GGAACCGAAGTTATAAAAGAAC-TCGTAAAAGTTTGACAAGATCGAAAGTTCGTCCAAGAACCAA
* * * *
89705 GAGAGAAATAATTCTCACGTAAATAAGTTTTTAATCCAAAAACCAAAACTTTTTTAAAACATGAC
703 GAGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAACTTGTTTAAAAAATGAC
* * * *
89770 AATCTATTTAGACCAAATGATTTAATTTCAAGAGCATGGAATATTCAAAAAATTGATCGAA-G--
768 AAACTATTTAGACCAAATGATGTGATTTCAAGAGCATGGAATATTCAAAAAATTGATGGAAGGAA
* *
89832 T-TATCGTCTTGAATAATTTAATGA
833 TGGATCGTCTTGAATAATTTAAGGA
* *
89856 ACCGAAGTTATAAAAGAACTTGTAAAAGTTTGAAAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* * *
89921 GAAACAATTCTCACGTAAATAAGTTTTTCAATTTAAAAACCAAAACTTGTTTACAAAATGAC-AA
66 GAAACAATTCTCACGTAAATAAGATTTT-AATTCAAACACCAAAACTTGTTTACAAAATGACAAA
* * * * *
89985 CTATTTAGATCAAATGATGTGATTTCCAGAGCAAGGAATGCTCAGAAAATTGCTTTTGAAAAGTA
130 CTATTTAGACCAAATGATGTGATTTCCCGAGCAAGGAATGTTCAGAAAATTGCTTTAGGAAAGTA
* *
90050 TCGTCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAAG-AAAAGTTTGACTAGTTTGGA
195 TCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACT-CGTAAAAGTTTGACTAGTTTGGA
* *
90114 AGTTCATCAAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACAAAA
259 AGTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACAAAA
90179 ACTTGTTTACAAATTGACAAACTATTTAAACCAAATGATATGATTTCCCGAGCATGGAATGTTAG
324 ACTTGTTTACAAATTGACAAACTATTTAAACCAAATGATATGATTTCCCGAGCATGGAATGTTA-
* * * *
90244 GAAAATTGTAGGAAAGAATGGATCATCTTGAATACTTTAAGGAATCAAAGTTGTGAAAGAACTCG
388 GAAAATTGCAGGAAAGAATGGATCGTCTTGAATACTTTAAGGAA-CGAAGTTATGAAAGAACTCG
* * * * * * *
90309 TAAAAGTTTGACAAGATCGAATGTTTGGCAGAGAACTA-AAAGAAATAATTCTCAAGTAGATAAG
452 TAAAAGTTTGACAAGATCGAAAGTTCGTCAAAGAACTAGAGAGAAATAATTCTCACGTAAATAAG
* *
90373 ATTAAATTCAAAGACCAAAAGTTGTTTACAAAAATTACAACTATTTAGATCAAATGATGCGATTT
517 ATTAAATTCAAAGACCAAAAGTTGTTTAC-AAAATGACAACTATTTAGACCAAATGATGCGATTT
* * * * * *
90438 CCCAAGCAAGTATTGTTTTGAAAAGTGCTCGAAGGAAAGTATCGTCTTCAATACTTTAAGGAACC
581 CCCAAGCATGTAATGTTTGGAAAATTGCTCGAA-GAAAGGATCGTCTTGAATACTTTAAGGAACC
* * *
90503 GAAGTTATACAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGAGAA
645 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGAAAGTTCGTCCAAGAACCAAGAGAGAA
* *
90567 ATAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAACTTTTTTAAAAAATGAGAAACTAT
710 ATAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAACTTGTTTAAAAAATGACAAACTAT
* * ** * * *
90632 TTAGACCAATTGATGTGATTTCAAGAGAATGGAATATTCGGAAATTTGATTGAAGGAATGGATTG
775 TTAGACCAAATGATGTGATTTCAAGAGCATGGAATATTCAAAAAATTGATGGAAGGAATGGATCG
*
90697 TCTTGAATAATTTAATGA
840 TCTTGAATAATTTAAGGA
* * * * * * *
90715 ACCAAAGTTATAAAAGACCTTGTAAATGTTTTATAAGATCGAAAGTTCGTCCAAGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* *
90780 GAAACAATTCTCACGTAAATAAG-TTTCTAATTTAAACACCAGAACTTGTTTACAAAATGAC-AA
66 GAAACAATTCTCACGTAAATAAGATTT-TAATTCAAACACCAAAACTTGTTTACAAAATGACAAA
* * *
90843 CTATTTAGATCAAATGATGTGATTTCCCGAGCAAGGAATGTTCAGAAAATTACTTTTGGAAAGTA
130 CTATTTAGACCAAATGATGTGATTTCCCGAGCAAGGAATGTTCAGAAAATTGCTTTAGGAAAGTA
* * * *
90908 TCGTCTTAAATACTGTAAGAAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACTAATTTGGAA
195 TCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGGAA
*
90973 GTTCGTCAAAGAACGAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACAAAAA
260 GTTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACAAAAA
* *
91038 CTTGTTTAGAAATTGACAAACTATTTAAACCAAATGATATGATTTCCCGAGCATGGAATGTTTGA
325 CTTGTTTACAAATTGACAAACTATTTAAACCAAATGATATGATTTCCCGAGCATGGAATGTTAGA
* * * *
91103 TAAATTGCAGGAAAGAATAGATCATCTTGAATACTTTAAGGAACCAAAGATATGAAAGAACTCGT
390 -AAATTGCAGGAAAGAATGGATCGTCTTGAATACTTTAAGGAA-CGAAGTTATGAAAGAACTCGT
* *
91168 AAAAGTTTGACAAGATTGCAAGTTCGTCAAAGAACTA-AGAGAAATAATTCTCACGTAAATAAGA
453 AAAAGTTTGACAAGATCGAAAGTTCGTCAAAGAACTAGAGAGAAATAATTCTCACGTAAATAAGA
* *
91232 TTAAATTCAAAGACCAAAAGTTGTGTACAAAATGACAACTATTTAGATCAAATGATGCGATTTCC
518 TTAAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCC
* * * * * * *
91297 CAAGCAAGTATTGTTTGGAAAAGTGCTCGAAGGAAAGAATCATCTTCAATACTTTGAGGAACCGA
583 CAAGCATGTAATGTTTGGAAAATTGCTCGAA-GAAAGGATCGTCTTGAATACTTTAAGGAACCGA
* * *
91362 AGTTATACAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAGAGAGAAAT
647 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGAAAGTTCGTCCAAGAACCAAGAGAGAAAT
* *
91426 AATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAACTTCTTTAAAAAATGAGAAACTATTT
712 AATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAACTTGTTTAAAAAATGACAAACTATTT
** * * *
91491 AGACCAAATGATGCAATTTCAAGAGCATGGAATATTCTAAAATTTGATGGAAGGAATGGATTGTC
777 AGACCAAATGATGTGATTTCAAGAGCATGGAATATTCAAAAAATTGATGGAAGGAATGGATCGTC
* *
91556 TTGAATAATTGAATGA
842 TTGAATAATTTAAGGA
* * * * *
91572 ACCGAAGTTATAAAAGAACCCGTAAAATTTTTACAAGATCGAAAGTTCATCCAAGAACCAAGAGA
1 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
* *
91637 GAAACAATTCTCACGTAAATAAGTTTTTAATTTAAACACCAAAACTTGTTTACAAAATGAC-AAC
66 GAAACAATTCTCACGTAAATAAGATTTTAATTCAAACACCAAAACTTGTTTACAAAATGACAAAC
** *
91701 TATTTAGATAAAATGATGTGATTTCCCGAGCAAGGAATGTTCAGAAAATTGCTTTTGGAAAGTAT
131 TATTTAGACCAAATGATGTGATTTCCCGAGCAAGGAATGTTCAGAAAATTGCTTTAGGAAAGTAT
* *
91766 CGTCTTAAATACTGTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTTGGAAG
196 CGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGGAAG
* *
91831 TTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTCATACATAAAAAC
261 TTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACAAAAAC
**
91896 TTGTTTACAAATTGACAAACTATTTAAACCAAATGATATGATTTCCCGATTATGGAATGTTCAGA
326 TTGTTTACAAATTGACAAACTATTTAAACCAAATGATATGATTTCCCGAGCATGGAATGTT-AGA
* * * * * *
91961 AAATTGCAGGAATGAATAGATCATCTTGAATATTTTAAGGAATGAAAGATATGAAAGAACTCGTA
390 AAATTGCAGGAAAGAATGGATCGTCTTGAATACTTTAAGGAACG-AAGTTATGAAAGAACTCGTA
*
92026 AAAGTTTGACAAGATCGAAAGTTCGTCAAAGAACTA-AGAGAAATAATTCTCACGTAATTAAGAT
454 AAAGTTTGACAAGATCGAAAGTTCGTCAAAGAACTAGAGAGAAATAATTCTCACGTAAATAAGAT
*
92090 TAAATTCGAAGACCAAAAGTTGT
519 TAAATTCAAAGACCAAAAGTTGT
92113 GATACGAGTC
Statistics
Matches: 4191, Mismatches: 549, Indels: 177
0.85 0.11 0.04
Matches are distributed among these distances:
849 26 0.01
852 161 0.04
853 85 0.02
854 163 0.04
855 430 0.10
856 438 0.10
857 949 0.23
858 722 0.17
859 329 0.08
860 418 0.10
861 92 0.02
862 73 0.02
863 157 0.04
864 123 0.03
865 25 0.01
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (857 bp):
ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGA
GAAACAATTCTCACGTAAATAAGATTTTAATTCAAACACCAAAACTTGTTTACAAAATGACAAAC
TATTTAGACCAAATGATGTGATTTCCCGAGCAAGGAATGTTCAGAAAATTGCTTTAGGAAAGTAT
CGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTTGGAAG
TTCGTCAAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACAAAAAC
TTGTTTACAAATTGACAAACTATTTAAACCAAATGATATGATTTCCCGAGCATGGAATGTTAGAA
AATTGCAGGAAAGAATGGATCGTCTTGAATACTTTAAGGAACGAAGTTATGAAAGAACTCGTAAA
AGTTTGACAAGATCGAAAGTTCGTCAAAGAACTAGAGAGAAATAATTCTCACGTAAATAAGATTA
AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAA
GCATGTAATGTTTGGAAAATTGCTCGAAGAAAGGATCGTCTTGAATACTTTAAGGAACCGAAGTT
ATAAAAGAACTCGTAAAAGTTTGACAAGATCGAAAGTTCGTCCAAGAACCAAGAGAGAAATAATT
CTCACATAAATAAGTTTTTAATCCAAAGACCAAAACTTGTTTAAAAAATGACAAACTATTTAGAC
CAAATGATGTGATTTCAAGAGCATGGAATATTCAAAAAATTGATGGAAGGAATGGATCGTCTTGA
ATAATTTAAGGA
Found at i:102718 original size:19 final size:19
Alignment explanation
Indices: 102694--102731 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
102684 AATATTTTTT
102694 TATTTTT-TTATTTTTCTCG
1 TATTTTTATT-TTTTTCTCG
102713 TATTTTTATTTTTTTCTCG
1 TATTTTTATTTTTTTCTCG
102732 ACTTTTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.11, C:0.11, G:0.05, T:0.74
Consensus pattern (19 bp):
TATTTTTATTTTTTTCTCG
Found at i:103433 original size:215 final size:215
Alignment explanation
Indices: 103057--106606 Score: 3685
Period size: 216 Copynumber: 16.6 Consensus size: 215
103047 TTACAAACCA
* * *
103057 AGAGAAATAATTCTCACGTAAATAAG-ATTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * * * * ** * * * *
103120 AACTATTTAGATCAAATGATGCGATTTCCCAAGCAAGTATTGTTTGGAAAAGTGCTCGGAGGAAA
66 AACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAAATTGATCGAAGGAAT
* * * * *
103185 GTATCGTCTTCAATATTTTAAGGAACCGAAGTTATACAAGAACTCGTAAAAGTTTGACAAGTTCG
131 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCG
*
103250 GAAGTTCGTCCAGAACCAGG
196 GAAGTTCGTCCAGAACCAAG
* * * *
103270 AGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAACTTGTTTAAAAAATGAGA
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * ** *
103335 AACTATTTAGACCCAATGATGCGATTTCAAGAGCATGGAATATTCAGAAAATTGATCGAAGGAAT
66 AACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAAATTGATCGAAGGAAT
* * * * ** * * *
103400 GGATCTTGTTGAATAATTTAATGAATGGAAGTTATAAAAGAAATCATAAAAGTTTAACAAGATCG
131 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCG
* *
103465 AAAGTTCGTTCAAGAACCAAG
196 GAAGTTCG-TCCAGAACCAAG
* * *
103486 AGAGAAATAATTCTCACGTAAATAATTTTTTAATTTAAACACCAAAACTTGTTTACAAAATGACA
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * *
103551 AACTATTTAAACCGAATGATGTGATTTCCCGAGCATGAAATGTT-TGAAAAATT-ACTCGAAGGA
66 AACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAG-AAAATTGA-TCGAAGGA
* * * *
103614 ATTGATCGTCTTGAATACTGTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGCTTGACAAGAT
129 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGAT
*
103679 CGAAAGTTCGTCCAAGAACCAAG
194 CGGAAGTTCGTCC-AGAACCAAG
* * **
103702 AGATAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACA
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * * *
103767 AACTATTTAGACCAAATGATGCT-ATTTCCCGTGCATGGAATGCTCGGAAAATT-ACTAGTAGGA
66 AACTATTTAGACCAAATGATG-TGATTTCCCGAGCATGGAATGTTCAGAAAATTGA-TCGAAGGA
* * * *
103830 ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTT
129 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGAT
** *
103895 CGGAAGTTCGTTAAAAAACCAAG
194 CGGAAGTTCG-TCCAGAACCAAG
* * * * * *
103918 AGAGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACAAAAACTTGTTTACAAATTGACA
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * ** * * * *
103983 AACTATTTAAACCAAATGATATGATATCCTAAGCATGGAATGTTTAAAAAATTGCTGGAAGGAAT
66 AACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAAATTGATCGAAGGAAT
* * * * * *
104048 GGGTCGTCTTGAATACTTTAAGGAACCAAAAGTTATGAATGAACTCATAAAAGTTTGACAAGATT
131 GGATCGTCTTGAATACTTTAAGGAACC-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATC
* *
104113 GGAAGTTCATCCAAGAACTAAG
195 GGAAGTTCGTCC-AGAACCAAG
* * * * *
104135 AGAGAAATAATTCTCACGTAAATAAGATTTAAATTCAAAGACCAAAAGTTGTTTAGAAAATAACA
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * ** *
104200 AACTATTTAGACCGAATGATATGATTTCCCGAGCATGGAATGTTTAGAAAATTTCTCGAAGAAAT
66 AACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAAATTGATCGAAGGAAT
* * * *
104265 GGATCGTCTTGAATACTTTAAGGAA-GGAAGTTATAAAAGAACTTGTAAAAGTTAGACAAGTTCG
131 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCG
* *
104329 GAAGTTCGTCAAAGAATCAAG
196 GAAGTTCGTC-CAGAACCAAG
* ** * *
104350 AGAGAAATAATCCTCACGTAAATAAGTTTTTAACCCAAAAACCAAAACTTTTTTA-AAATATGAC
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA-ATGAC
* * * ** * *
104414 AATCTATTTAGACCAAATTATGCGATTTCAAGAGCATGGAATATTCAAAAAATTGATC----GAA
65 AAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAAATTGATCGAAGGAA
* * *
104475 -GGATCGTCTTGAATAATTTAATGAACCGAAGTTATAAAA-AACATCGTAAAAGTTTGAAAAGAT
130 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC-TCGTAAAAGTTTGACAAGAT
*
104538 CGAAAGTTCGTCCAAGAACCAAG
194 CGGAAGTTCGTCC-AGAACCAAG
* * * * * *
104561 AGAGAAACAATTCTCGCGTAAATAAGTTTTTTAATTTAAAAACCAAAACTTGTTTAGAATATGAC
1 AGAGAAATAATTCTCACGTAAATAAG-TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAC
** * * ***
104626 -AACTATTTAGATAAAATGATGTGATTTCCCGAGCAAGGAATGTTCAGAAAATTGCT-TTTGGAA
65 AAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAAATTGATCGAAGGAA
* * * * * * * * *
104689 AGTATCATCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACACATAAAAGTTTGACTAGTTT
130 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATC
* *
104754 GGAAGTTCGTCAAAGAACGAAG
195 GGAAGTTCGTC-CAGAACCAAG
* * * * * * * *
104776 AGAGAAACAATTCTCACGCAAATAAGATTTTAATTCATACACAAAAACTTGTTTACAAATTGAAA
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * ** * * *
104841 AACTATTTAAACCAAATGATATGATTTCTTGAGCATGGAATGTTCGGAAAATTGCA-GGAAAGAA
66 AACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAAATTG-ATCGAAGGAA
** * *
104905 TAAATCATCTTGAATACTTTAAGGAACCGAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGATC
130 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATC
* * * * *
104970 GAAAATTCATCAAAGAA-CTA-
195 GGAAGTTCGTC-CAGAACCAAG
* * *
104990 AGAGAAATAATTCTCACGTAAATAAG-ATTAAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * * * ** * * *
105053 AACTATTTAGATCAAATGATGCGATTTCCCGAGCAAGTATTGTTTGGAAAAGTGCTCGAAGGAAA
66 AACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAAATTGATCGAAGGAAT
* * * * * *
105118 GTATCATCTTCAATACTTTAAGGAATCGAAGTTATACAAGAACTCGTAAAAGTTTGACAAGTTCG
131 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCG
105183 GAAGTTCGTCCAGAACCAAG
196 GAAGTTCGTCCAGAACCAAG
* * * *
105203 AGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAACTTGTTTAAAAAATGAGA
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* ** * *
105268 AACTATTTAGACCAAATGATGCGATTTCAAGAGCATGAAATATTCA-AAAATTTGATCGAAGGAA
66 AACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAAA-TTGATCGAAGGAA
* * * * *
105332 TGGATCGTCTTAAATAATTTAATGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGATC
130 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATC
105397 GGAAGTTCGTCCAAGAACCAAG
195 GGAAGTTCGTCC-AGAACCAAG
* * * * *
105419 AGAGAAATAATTCTCACGTAAATAAATATTTAATTTAAACAACAAAACTTGTTTACAAAATGACA
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * * * * *
105484 AACTATTTGGACCGAATGATGTGTTTTCCCGAGCATGAAATGTT-TGAAAAATTGCTGGAAGGAA
66 AACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAG-AAAATTGATCGAAGGAA
* * ** * *
105548 TAGTTCGTCTTGAATACTTTAAGGAATTGAAGTTATAATAGAACTAGTAAAAGTTTGACAAGATC
130 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATC
*
105613 GAAAGTTCGTCCAAGAACCAAG
195 GGAAGTTCGTCC-AGAACCAAG
* * * * * **
105635 AGAGAAATAATTATTATGTAAATAAGATTTTGATTCAAAGACCAAATGTTGTTTACAAAATGACA
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * * * * *
105700 AACTATTTAGACCAAATGATGTTA-TT---GTGCGTGAAATGCTC-GCAAAATT-ACTGGTAGGA
66 AACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAG-AAAATTGA-TCGAAGGA
* * *
105759 ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTT
129 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGAT
* * *
105824 TGGAAGTTCATCAAAGAACCAAG
194 CGGAAGTTCGTC-CAGAACCAAG
* * * * * * *
105847 AGATAAACAATTCTTACGTAAATAAGATTTTAATTCATACA-CAAAACCTTGTTTACAAATTGAC
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-CTTGTTTACAAAATGAC
* * * * * *
105911 AAACTATTTAAACCTAATGATATGA-TTCCCGAGCATGGAATGCTC-GAAAAATTGCTGGAAGGA
65 AAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAG-AAAATTGATCGAAGGA
* * * * * * *
105974 ATGGATCGCCTTAAATACTTTAAGGAACCAAAGTTCTGAATGAACTCGCAAAAGTTTGACAAGAT
129 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGAT
* * * *
106039 CAGAATTTTGTCCAAGAACTAAG
194 CGGAAGTTCGTCC-AGAACCAAG
* * * * * * *
106062 AGAGAAATAACTCTCACGTAAATAAGATTTAAATTCAAAGACCAAAAGTTGTTCAGAAAATAACA
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * **
106127 AACTATTTAGACCAAATGATATGATTTCCCGAGCATGAAATGTTTAGAAAATTTCTCGAAGGAAT
66 AACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAAATTGATCGAAGGAAT
* * * * * *
106192 TGATCGTCTTGAATACTGTAAGGAA-GGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTTG
131 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCG
* * * *
106256 AAAGTTTGTCAAAGAATCAAG
196 GAAGTTCGTC-CAGAACCAAG
* * *
106277 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATCCAAA-AGCCAAAACTTTTTTA-AAATTTGA
1 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CCAAAACTTGTTTACAAA-ATGA
* * * ** * * * *
106340 CAATCTATTTAGACCAAATAATGCGATTTCAAGAGAATGGAATATTCAAAAAATTGATC----TA
64 CAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAAATTGATCGAAGGA
* * * *
106401 A-GGATCGTCTTGAATAATTTAATGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGAT
129 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGAT
*
106465 CGAAAG-TCTGTCCAAGAACCAAG
194 CGGAAGTTC-GTCC-AGAACCAAG
* *
106488 AGAGAAACAATTCTCACGTAAATAAGTTTTTAAATTTGAAA-ACCAAAACTTGTTTACAAAATGA
1 AGAGAAATAATTCTCACGTAAATAAGTTTTT-AA-TTCAAAGACCAAAACTTGTTTACAAAATGA
* *
106552 C-AACTATTTAGATCAAATGATGTGATTTCCCGAGCAAGGAATGTTCAGAAAATTG
64 CAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAAATTG
106607 CTTTTGGAAA
Statistics
Matches: 2764, Mismatches: 513, Indels: 122
0.81 0.15 0.04
Matches are distributed among these distances:
210 48 0.02
211 250 0.09
212 336 0.12
213 89 0.03
214 129 0.05
215 818 0.30
216 903 0.33
217 191 0.07
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (215 bp):
AGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
AACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAAATTGATCGAAGGAAT
GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCG
GAAGTTCGTCCAGAACCAAG
Found at i:105453 original size:643 final size:640
Alignment explanation
Indices: 103057--106608 Score: 3990
Period size: 643 Copynumber: 5.5 Consensus size: 640
103047 TTACAAACCA
*
103057 AGAGAAATAATTCTCACGTAAATAAGATTAAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
1 AGAGAAATAATTCTCACGTAAATAAGATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* * * * * * *
103122 CTATTTAGATCAAATGATGCGATTTCCCAAGCAAGTATTGTTTGGAAAAGTGCTCGGAGGAAAGT
66 CTATTTAGACCAAATGATGCGATTTCCCGAGCAAGGAATGTTCGGAAAATTGCTCGAAGG-AAG-
* * *
103187 ATCGTCTTCAATATTTTAAGGAACCGAAGTTATACAAGAACTCGTAAAAGTTTGACAAGTTCGGA
129 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * * * *
103252 AGTTCGTCCAGAACCAGGAGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAA
194 AGTTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAA
* * * *
103317 CTTGTTTAAAAAATGAGAAACTATTTAGACCCAATGATGCGATTTCAAGAGCATGGAATATTCAG
259 CTTGTTTACAAAATGA-AAACTATTTAGACCAAATGATGTGATTTCAAGAGCATGGAATGTTCA-
* * * * * * ** *
103382 AAAATTGATCGAAGGAATGGATCTTGTTGAATAATTTAATGAATGGAAGTTATAAAAGAAATCAT
322 AAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCAT
* * * *
103447 AAAAGTTTAACAAGATCGAAAGTTCGTTCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAT
387 AAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAG
* * * * *
103512 TTTTTAATTTAAACACCAAAACTTGTTTACAAAATGACAAACTATTTAAACCGAATGATGTGATT
452 ATTTTAATTCAAACACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCGAATGATATGATT
* * * *
103577 TCCCGAGCATGAAATGTTTGAAAAATTACTCGAAGGAATTGATCGTCTTGAATACTGTAAGGAAC
517 TCCCGAGCATGAAATGTTTGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAA-
* * *
103642 CGAAGTTATAAAAGAACTAGTAAAAGCTTGACAAGATCGAAAGTTCGTCCAAGAACCAAG
581 CGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGATCGAAAGTTCGTCAAAGAATCAAG
* *
103702 AGATAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACA
1 AGAGAAATAATTCTCACGTAAATAAGA-TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-
* * * * * * *
103767 AACTATTTAGACCAAATGATGCTATTTCCCGTGCATGGAATGCTCGGAAAATTACTAGTAGGAAT
64 AACTATTTAGACCAAATGATGCGATTTCCCGAGCAAGGAATGTTCGGAAAATTGCTCGAAGGAA-
* * *
103832 GGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACTAGTTCG
128 -GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG
** * * * *
103897 GAAGTTCGTTAAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTCATACACAA
192 GAAGTTCG-TCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAACACCA
* * * * *
103962 AAACTTGTTTACAAATTGACAAACTATTTAAACCAAATGATATGATATCCTA-AGCATGGAATGT
256 AAACTTGTTTACAAAATGA-AAACTATTTAGACCAAATGATGTGAT-TTCAAGAGCATGGAATG-
* * * * * * *
104026 TTAAAAAATTGCTGGAAGGAATGGGTCGTCTTGAATACTTTAAGGAACCAAAAGTTATGAATGAA
318 TTCAAAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACC-GAAGTTATAAAAGAA
* * *
104091 CTCATAAAAGTTTGACAAGATTGGAAGTTCATCCAAGAACTAAGAGAGAAATAATTCTCACGTAA
382 CTCATAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAA
* * * *
104156 ATAAGATTTAAATTCAAAGACCAAAAGTTGTTTAGAAAAT-AACAAACTATTTAGACCGAATGAT
447 ATAAGATTTTAATTCAAACACCAAAACTTGTTTACAAAATGAA-AAACTATTTAGACCGAATGAT
* * * * *
104220 ATGATTTCCCGAGCATGGAATGTTTAGAAAATTTCTCGAAGAAATGGATCGTCTTGAATACTTTA
511 ATGATTTCCCGAGCATGAAATGTTTGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTA
* * * * *
104285 AGGAAGGAAGTTATAAAAGAACTTGTAAAAGTTAGACAAGTTCGGAAGTTCGTCAAAGAATCAAG
576 AGGAACGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGATCGAAAGTTCGTCAAAGAATCAAG
* * ** * * *
104350 AGAGAAATAATCCTCACGTAAATAAGTTTTTAACCCAAAAACCAAAACTTTTTTA-AAATATGAC
1 AGAGAAATAATTCTCACGTAAATAAG-ATTTAATTCAAAGACCAAAAGTTGTTTACAAA-ATGAC
* ** * * ** *
104414 AATCTATTTAGACCAAATTATGCGATTTCAAGAGCATGGAATATTCAAAAAATTGATCGAA-G--
64 AA-CTATTTAGACCAAATGATGCGATTTCCCGAGCAAGGAATGTTCGGAAAATTGCTCGAAGGAA
* * * *
104476 GATCGTCTTGAATAATTTAATGAACCGAAGTTATAAAA-AACATCGTAAAAGTTTGAAAAGATCG
128 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAC-TCGTAAAAGTTTGACAAGTTCG
* * * *
104540 AAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCGCGTAAATAAGTTTTTTAATTTAAAAACC
192 GAAGTTCGTCC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTTAATTCAAACACC
* * * ** ** *
104605 AAAACTTGTTTAGAATATGACAACTATTTAGATAAAATGATGTGATTTCCCGAGCAAGGAATGTT
255 AAAACTTGTTTACAAAATGAAAACTATTTAGACCAAATGATGTGATTTCAAGAGCATGGAATGTT
*** * * * *
104670 CAGAAAATTGCT-TTTGGAAAGTATCATCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACA
320 CA-AAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACT
* * * * * * *
104734 CATAAAAGTTTGACTAGTTTGGAAGTTCGTCAAAGAACGAAGAGAGAAACAATTCTCACGCAAAT
384 CATAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAAT
* * * * *
104799 AAGATTTTAATTCATACACAAAAACTTGTTTACAAATTGAAAAACTATTTAAACCAAATGATATG
449 AAGATTTTAATTCAAACACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCGAATGATATG
** * * ** * * *
104864 ATTTCTTGAGCATGGAATGTTCGGAAAATTGCAGGAAAGAATAAATCATCTTGAATACTTTAAGG
514 ATTTCCCGAGCATGAAATGTTTGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGG
* * * * *
104929 AACCGAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGATCGAAAATTCATCAAAGAA-CTA-
579 AA-CGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGATCGAAAGTTCGTCAAAGAATCAAG
*
104990 AGAGAAATAATTCTCACGTAAATAAGATTAAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
1 AGAGAAATAATTCTCACGTAAATAAGATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
* * * * *
105055 CTATTTAGATCAAATGATGCGATTTCCCGAGCAAGTATTGTTTGGAAAAGTGCTCGAAGGAAAGT
66 CTATTTAGACCAAATGATGCGATTTCCCGAGCAAGGAATGTTCGGAAAATTGCTCGAAGG-AAG-
* * * *
105120 ATCATCTTCAATACTTTAAGGAATCGAAGTTATACAAGAACTCGTAAAAGTTTGACAAGTTCGGA
129 ATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * * *
105185 AGTTCGTCCAGAACCAAGAGAGAAATAATTCTCACATAAATAAGTTTTTAATCCAAAGACCAAAA
194 AGTTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAA
* * * *
105250 CTTGTTTAAAAAATGAGAAACTATTTAGACCAAATGATGCGATTTCAAGAGCATGAAATATTCAA
259 CTTGTTTACAAAATGA-AAACTATTTAGACCAAATGATGTGATTTCAAGAGCATGGAATGTTCAA
* * * * *
105315 AAATTTGATCGAAGGAATGGATCGTCTTAAATAATTTAATGAATCGAAGTTATAAAAGAACTCGT
323 AAA-TTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCAT
*
105380 AAAAGTTTTACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAA-
387 AAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAG
* * * * * *
105444 ATATTTAATTTAAACAACAAAACTTGTTTACAAAATGACAAACTATTTGGACCGAATGATGTGTT
452 AT-TTTAATTCAAACACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCGAATGATATGAT
* * *
105509 TTCCCGAGCATGAAATGTTTGAAAAATTGCTGGAAGGAATAGTTCGTCTTGAATACTTTAAGGAA
516 TTCCCGAGCATGAAATGTTTGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAA
* * * *
105574 TTGAAGTTATAATAGAACTAGTAAAAGTTTGACAAGATCGAAAGTTCGTCCAAGAACCAAG
581 -CGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGATCGAAAGTTCGTCAAAGAATCAAG
* * * * *
105635 AGAGAAATAATTATTATGTAAATAAGATTTTGATTCAAAGACCAAATGTTGTTTACAAAATGACA
1 AGAGAAATAATTCTCACGTAAATAAGA-TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-
** * * * * * * *
105700 AACTATTTAGACCAAATGATGTTATTGT-GCGTG--A--AATGCTCGCAAAATTACTGGTAGGAA
64 AACTATTTAGACCAAATGATGCGATT-TCCCGAGCAAGGAATGTTCGGAAAATTGCTCGAAGGAA
* * *
105760 TGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTT
128 --GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
* * * * * *
105825 GGAAGTTCATCAAAGAACCAAGAGATAAACAATTCTTACGTAAATAAGATTTTAATTCATACA-C
191 GGAAGTTCGTC-CAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAACACC
* * * * **
105889 AAAACCTTGTTTACAAATTGACAAACTATTTAAACCTAATGATATGA-TTCCCGAGCATGGAATG
255 AAAA-CTTGTTTACAAAATGA-AAACTATTTAGACCAAATGATGTGATTTCAAGAGCATGGAATG
* * * * * * *
105953 CTCGAAAAATTGCTGGAAGGAATGGATCGCCTTAAATACTTTAAGGAACCAAAGTTCTGAATGAA
318 TTC-AAAAATTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAA
** * * * * *
106018 CTCGCAAAAGTTTGACAAGATCAGAATTTTGTCCAAGAACTAAGAGAGAAATAACTCTCACGTAA
382 CTCATAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAA
* * * * * *
106083 ATAAGATTTAAATTCAAAGACCAAAAGTTGTTCAGAAAAT-AACAAACTATTTAGACCAAATGAT
447 ATAAGATTTTAATTCAAACACCAAAACTTGTTTACAAAATGAA-AAACTATTTAGACCGAATGAT
* * * *
106147 ATGATTTCCCGAGCATGAAATGTTTAGAAAATTTCTCGAAGGAATTGATCGTCTTGAATACTGTA
511 ATGATTTCCCGAGCATGAAATGTTTGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTA
* * * * *
106212 AGGAAGGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTTGAAAGTTTGTCAAAGAATCAAG
576 AGGAACGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGATCGAAAGTTCGTCAAAGAATCAAG
* * * * *
106277 AGAGAAATAATTCTCACGTAAATAAGTTTTTAATCCAAA-AGCCAAAACTTTTTTA-AAATTTGA
1 AGAGAAATAATTCTCACGTAAATAAG-ATTTAATTCAAAGA-CCAAAAGTTGTTTACAAA-ATGA
* ** * ** * *
106340 CAATCTATTTAGACCAAATAATGCGATTTCAAGAG-AATGGAATATTCAAAAAATTGATCTAA-G
63 CAA-CTATTTAGACCAAATGATGCGATTTCCCGAGCAA-GGAATGTTCGGAAAATTGCTCGAAGG
* * * * *
106403 --GATCGTCTTGAATAATTTAATGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGATC
126 AAGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
* *
106466 GAAAG-TCTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAATTTGAAA-
191 GGAAGTTC-GTCC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT-AA-TTCAAAC
* * ** *
106529 ACCAAAACTTGTTTACAAAATGACAACTATTTAGATCAAATGATGTGATTTCCCGAGCAAGGAAT
252 ACCAAAACTTGTTTACAAAATGAAAACTATTTAGACCAAATGATGTGATTTCAAGAGCATGGAAT
106594 GTTCAGAAAATTGCT
317 GTTCA-AAAATTGCT
106609 TTTGGAAAGT
Statistics
Matches: 2422, Mismatches: 427, Indels: 119
0.82 0.14 0.04
Matches are distributed among these distances:
638 45 0.02
639 29 0.01
640 30 0.01
641 343 0.14
642 332 0.14
643 773 0.32
644 119 0.05
645 52 0.02
646 82 0.03
647 146 0.06
648 280 0.12
649 191 0.08
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (640 bp):
AGAGAAATAATTCTCACGTAAATAAGATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
CTATTTAGACCAAATGATGCGATTTCCCGAGCAAGGAATGTTCGGAAAATTGCTCGAAGGAAGAT
CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG
TTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACT
TGTTTACAAAATGAAAACTATTTAGACCAAATGATGTGATTTCAAGAGCATGGAATGTTCAAAAA
TTGCTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAA
GTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGATTT
TAATTCAAACACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCGAATGATATGATTTCCC
GAGCATGAAATGTTTGGAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAACGAAG
TTATAAAAGAACTAGTAAAAGTTTGACAAGATCGAAAGTTCGTCAAAGAATCAAG
Found at i:115369 original size:21 final size:21
Alignment explanation
Indices: 115344--115395 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
115334 TTGGACAATA
115344 CTACCGATACAGGT-ATGACTT
1 CTACCGATACAGGTCATG-CTT
* *
115365 CTACCGAAACATGTCATGCTT
1 CTACCGATACAGGTCATGCTT
115386 CTACCGATAC
1 CTACCGATAC
115396 TAAAAACTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 24 0.89
22 3 0.11
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (21 bp):
CTACCGATACAGGTCATGCTT
Found at i:118703 original size:16 final size:16
Alignment explanation
Indices: 118678--118708 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
118668 GCATTCGAGA
*
118678 TTGTGGTTGCATCTGG
1 TTGTGCTTGCATCTGG
118694 TTGTGCTTGCATCTG
1 TTGTGCTTGCATCTG
118709 ATCAGGGTGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.16, G:0.32, T:0.45
Consensus pattern (16 bp):
TTGTGCTTGCATCTGG
Found at i:127021 original size:16 final size:16
Alignment explanation
Indices: 127000--127030 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
126990 ACCTAATCAC
127000 CGGGTTCAAGGTTAAT
1 CGGGTTCAAGGTTAAT
127016 CGGGTTCAAGGTTAA
1 CGGGTTCAAGGTTAA
127031 CTTGTTTACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.13, G:0.32, T:0.29
Consensus pattern (16 bp):
CGGGTTCAAGGTTAAT
Found at i:130058 original size:31 final size:31
Alignment explanation
Indices: 130023--130088 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
130013 TTACGCATTC
130023 TAACACTTTCTTATTTCTTGTGTTAGTAGGT
1 TAACACTTTCTTATTTCTTGTGTTAGTAGGT
130054 TAACACTTTCTTATTTCTTGTGTTAGTAGGT
1 TAACACTTTCTTATTTCTTGTGTTAGTAGGT
130085 TAAC
1 TAAC
130089 GAACAAGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.21, C:0.14, G:0.15, T:0.50
Consensus pattern (31 bp):
TAACACTTTCTTATTTCTTGTGTTAGTAGGT
Done.