genome.fa.s12425.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012425.1 Kokia drynarioides strain JFW-HI SEQ_127429, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  203836

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531--823	30	10.0	29	81	9	335	36	28	2	32	1.70
531--822	59	4.9	59	86	2	390	35	28	2	32	1.70
2855--2897	21	2.0	21	86	0	59	55	13	13	16	1.69
6431--6511	42	2.0	41	85	2	108	43	27	4	24	1.75
19600--20139	266	2.0	266	98	0	1037	30	12	25	32	1.92
22753--22838	44	2.0	44	100	0	172	55	17	6	19	1.64
29141--29209	17	3.8	17	70	20	59	23	8	0	68	1.17
29124--29201	38	2.1	38	90	0	120	21	8	1	67	1.25
29917--29945	13	2.1	14	93	6	51	44	10	20	24	1.82
43270--43326	19	2.9	19	89	5	87	33	5	12	49	1.63
51850--51913	24	2.7	23	71	23	60	15	4	9	70	1.30
52198--52245	22	2.2	21	85	10	62	20	2	6	70	1.19
53550--53581	3	11.0	3	93	6	57	0	31	0	68	0.90
56331--56381	22	2.3	22	96	0	93	50	0	31	17	1.46
65664--65937	99	2.7	99	77	7	268	36	19	18	25	1.95
67965--67989	3	8.3	3	100	0	50	36	0	0	64	0.94
73941--74021	36	2.2	39	84	6	105	70	3	0	25	1.04
74160--74239	21	3.6	22	73	9	72	73	17	1	7	1.12
74128--74255	45	2.9	43	80	9	125	71	18	1	7	1.18
74153--74212	12	5.0	12	75	0	66	71	20	1	6	1.17
74184--74288	22	4.8	21	72	18	70	68	20	4	6	1.31
74154--74255	24	4.5	23	72	10	77	72	19	1	5	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74239--74288	22	2.3	21	89	3	73	64	20	8	8	1.46
76116--76172	26	2.2	26	100	0	114	52	3	14	29	1.58
76288--76323	17	2.1	18	89	5	56	44	0	5	50	1.25
77000--77108	42	2.6	42	89	1	164	32	11	27	29	1.91
80792--80838	18	2.4	21	86	10	64	23	14	27	34	1.94
82497--82543	16	2.9	16	78	6	51	65	0	2	31	1.04
83639--83708	29	2.3	29	81	16	81	55	2	0	41	1.14
83605--83718	20	5.6	20	71	19	67	57	1	0	41	1.09
83576--83866	9	29.9	9	65	20	74	59	4	1	34	1.24
83846--83889	21	2.1	21	82	0	52	68	4	0	27	1.09
84005--84070	10	6.8	9	75	13	51	63	4	1	30	1.23
84095--84163	22	3.3	22	72	17	56	55	1	0	43	1.08
91670--91707	11	3.7	10	83	16	51	52	0	0	47	1.00
91665--91707	20	2.1	21	91	4	70	51	0	2	46	1.13
92580--92612	17	1.9	17	100	0	66	48	0	3	48	1.17
92884--92926	19	2.3	19	83	0	50	34	2	4	58	1.32
92943--93031	8	9.5	8	76	21	52	38	0	3	58	1.15
92951--93051	19	5.3	18	74	17	80	39	0	2	57	1.14
92951--93051	10	10.6	9	74	17	71	39	0	2	57	1.14
92951--93051	18	5.2	20	74	16	65	39	0	2	57	1.14
92965--93022	30	1.9	30	89	6	91	36	0	5	58	1.20
93016--93059	18	2.4	17	82	14	52	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93018--93062	21	2.3	20	85	11	58	42	2	0	55	1.12
97854--97952	11	9.6	11	68	23	56	40	2	3	54	1.27
97862--97954	35	2.7	34	88	6	125	40	1	3	54	1.23
97894--97954	6	10.5	6	76	13	65	44	1	1	52	1.20
97862--97954	17	5.4	17	84	7	125	40	1	3	54	1.23
97862--97971	52	2.1	52	86	0	148	41	1	3	52	1.29
99834--100027	59	3.3	59	84	3	250	34	24	4	36	1.76
99834--100028	29	6.7	29	76	9	173	34	24	4	36	1.76
99834--100122	59	4.9	57	79	6	212	32	24	5	36	1.79
100099--100161	28	2.2	28	85	0	90	34	26	11	26	1.90
100099--100171	28	2.6	28	84	2	83	31	26	10	31	1.90
105709--105799	6	15.3	6	73	11	62	78	2	15	4	1.01
105730--105814	30	2.9	29	78	14	95	77	2	17	2	0.98
105765--105814	25	2.0	25	85	14	68	80	4	12	4	1.00
105768--105810	18	2.4	18	82	17	63	79	4	11	4	1.04
107015--107191	50	3.5	50	75	13	184	35	19	29	15	1.92
107016--107202	100	1.9	101	89	1	286	35	18	28	16	1.93
107780--107987	115	1.8	115	85	2	292	35	18	21	24	1.96
108229--109072	206	4.1	206	89	1	1210	36	19	22	21	1.95
114881--115191	84	3.7	84	81	7	341	31	11	13	43	1.80
115510--115550	15	2.9	15	75	24	52	39	7	17	36	1.77
117490--117548	30	2.0	30	93	0	100	30	16	30	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125085--125180	51	1.9	51	85	10	135	41	1	8	48	1.40
129815--129887	29	2.5	30	88	2	103	38	16	15	30	1.89
130372--130482	42	2.7	41	73	9	116	19	21	30	27	1.98
131815--132008	64	3.2	63	68	20	196	33	3	7	55	1.46
131832--132018	62	3.1	61	68	18	185	31	3	8	57	1.44
131811--132044	117	2.0	117	97	0	441	32	4	7	55	1.49
133144--133188	20	2.2	20	88	4	63	22	35	4	37	1.74
135551--135743	77	2.5	79	84	7	234	33	11	11	44	1.76
149752--150079	92	3.6	91	75	11	280	38	17	7	35	1.80
151462--151521	30	1.9	32	86	6	88	51	3	1	43	1.28
163480--163644	82	2.0	82	97	0	312	32	10	13	43	1.78
171626--171805	93	1.9	93	85	5	247	48	5	3	41	1.44
172961--173000	20	2.0	20	85	9	55	45	2	5	47	1.38
181499--181555	30	1.9	30	96	0	105	28	8	3	59	1.44
181668--181718	23	2.2	23	85	0	66	35	1	15	47	1.57
181704--181807	21	5.3	20	74	15	92	23	4	13	58	1.54
181709--181798	37	2.5	36	81	16	114	23	4	13	58	1.53
181705--181813	58	1.9	56	88	3	164	22	4	13	58	1.54
184710--184747	18	2.1	18	100	0	76	39	44	0	15	1.47
185094--185141	23	2.1	23	84	7	62	22	6	27	43	1.77
186353--186409	29	2.0	29	82	0	69	45	10	19	24	1.81
187267--187352	41	2.1	41	91	0	136	17	29	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188888--188921	15	2.3	15	90	10	52	41	14	11	32	1.82
189932--189968	7	5.3	7	86	0	56	56	0	0	43	0.99
189932--189980	21	2.4	21	82	3	55	55	4	0	40	1.19
190072--190224	75	2.1	74	94	1	270	31	16	8	43	1.78
196853--196892	3	13.3	3	100	0	80	32	0	0	67	0.91
203169--203230	17	3.7	17	87	8	83	43	0	4	51	1.23
203165--203230	33	2.0	32	85	8	89	42	0	6	51	1.26
203270--203338	15	4.6	15	81	0	93	44	24	13	17	1.84

Tables:   1

The End!