Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012429.1 Kokia drynarioides strain JFW-HI SEQ_127433, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 846

Length: 1410
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.32


Found at i:1188 original size:23 final size:23

Alignment explanation


    Indices: 1162--1234  Score: 128
    Period size: 23  Copynumber: 3.2  Consensus size: 23

       1152 ACACTAGCGC

                                   
       1162 GCTCTCTGATTAGCACTGTGTGT
          1 GCTCTCTGATTAGCACTGTGTGT

                               *   
       1185 GCTCTCTGATTAGCACTGTATGT
          1 GCTCTCTGATTAGCACTGTGTGT

                             *     
       1208 GCTCTCTGATTAGCACTTTGTGT
          1 GCTCTCTGATTAGCACTGTGTGT

                
       1231 GCTC
          1 GCTC

       1235 AGTACTTTGT


Statistics
Matches: 47,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  23   47  1.00

ACGTcount: A:0.14, C:0.23, G:0.23, T:0.40


Consensus pattern (23 bp):   
GCTCTCTGATTAGCACTGTGTGT
Done.