Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001243.1 Kokia drynarioides strain JFW-HI SEQ_112608, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6183
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33


Found at i:5411 original size:19 final size:19

Alignment explanation


    Indices: 5384--5421  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       5374 TAATATTACC

                *              
       5384 AAAATATTTATTATTATTA
          1 AAAAAATTTATTATTATTA

                               
       5403 AAAAAATTTATTATTATTA
          1 AAAAAATTTATTATTATTA

       5422 TTAATGTTAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (19 bp):   
AAAAAATTTATTATTATTA

Found at i:6142 original size:17 final size:17

Alignment explanation


    Indices: 6117--6183  Score: 71
    Period size: 17  Copynumber: 3.9  Consensus size: 17

       6107 TTTTAATTTT

                *            
       6117 ATTTTAATTTAAAATAA
          1 ATTTAAATTTAAAATAA

                         *   
       6134 ATTTAAATTTAAAGTAA
          1 ATTTAAATTTAAAATAA

               *   * *     * 
       6151 ATTCAAACTCAAAATGA
          1 ATTTAAATTTAAAATAA

                *           
       6168 ATTTGAATTTAAAATA
          1 ATTTAAATTTAAAATA


Statistics
Matches: 38,  Mismatches: 12, Indels: 0
        0.76            0.24        0.00

Matches are distributed among these distances:
  17   38  1.00

ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39


Consensus pattern (17 bp):   
ATTTAAATTTAAAATAA
Done.