Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012430.1 Kokia drynarioides strain JFW-HI SEQ_127434, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2274
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36


Found at i:1093 original size:6 final size:6

Alignment explanation


    Indices: 1082--1146  Score: 50
    Period size: 6  Copynumber: 11.3  Consensus size: 6

       1072 AATTGGACAT

                                                          *          
       1082 TTTAAA TTTAAA TTTATAA --TAAA TTTAAA TTTCAAA --AAAA TTTAAA
          1 TTTAAA TTTAAA TTTA-AA TTTAAA TTTAAA TTT-AAA TTTAAA TTTAAA

                    *       *      
       1128 TTTAAA -ATAAA TTCAAA TT
          1 TTTAAA TTTAAA TTTAAA TT

       1147 CCAATAGGCC


Statistics
Matches: 47,  Mismatches: 5, Indels: 14
        0.71            0.08        0.21

Matches are distributed among these distances:
   4    5  0.11
   5    6  0.13
   6   31  0.66
   7    5  0.11

ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43


Consensus pattern (6 bp):   
TTTAAA

Found at i:1106 original size:17 final size:16

Alignment explanation


    Indices: 1084--1146  Score: 81
    Period size: 17  Copynumber: 3.8  Consensus size: 16

       1074 TTGGACATTT

                             
       1084 TAAATTTAAATTTATAA
          1 TAAATTTAAATTTA-AA

                             
       1101 TAAATTTAAATTTCAAA
          1 TAAATTTAAATTT-AAA

            *                
       1118 AAAATTTAAATTTAAAA
          1 TAAATTTAAATTT-AAA

                  *     
       1135 TAAATTCAAATT
          1 TAAATTTAAATT

       1147 CCAATAGGCC


Statistics
Matches: 41,  Mismatches: 4, Indels: 2
        0.87            0.09        0.04

Matches are distributed among these distances:
  17   40  0.98
  18    1  0.02

ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41


Consensus pattern (16 bp):   
TAAATTTAAATTTAAA
Done.