Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012431.1 Kokia drynarioides strain JFW-HI SEQ_127435, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7432
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.29

Warning! 150 characters in sequence are not A, C, G, or T


Found at i:3162 original size:12 final size:13

Alignment explanation


    Indices: 3134--3163  Score: 53
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       3124 ACAGCACTTT

                         
       3134 TTTTTAAAAGCAC
          1 TTTTTAAAAGCAC

                         
       3147 TTTTTAAAAGCA-
          1 TTTTTAAAAGCAC

                 
       3159 TTTTT
          1 TTTTT

       3164 CAACCACAAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12    5  0.29
  13   12  0.71

ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50


Consensus pattern (13 bp):   
TTTTTAAAAGCAC
Done.