genome.fa.s12436.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012436.1 Kokia drynarioides strain JFW-HI SEQ_127440, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145928

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606--1077	58	8.0	59	89	3	700	34	32	2	30	1.71
605--1076	118	4.0	118	89	3	709	34	32	2	30	1.71
606--1048	235	1.9	235	92	1	755	35	31	2	30	1.70
9970--10001	14	2.1	16	88	11	50	68	0	3	28	1.04
10766--10845	10	7.7	10	71	10	54	27	5	2	65	1.27
11279--11388	50	2.2	52	81	6	127	43	6	20	29	1.77
12563--12886	158	2.1	158	90	1	506	22	21	25	30	1.99
17468--17525	31	1.9	30	86	10	82	43	5	8	43	1.57
19008--19057	21	2.5	22	84	12	63	46	2	0	52	1.12
19447--19510	33	1.9	34	84	9	87	28	7	1	62	1.32
20062--20109	16	2.9	16	81	3	60	41	0	2	56	1.11
20798--20828	15	2.0	16	93	6	55	61	0	0	38	0.96
21078--21122	16	2.8	17	84	15	60	42	2	4	51	1.34
21082--21124	17	2.4	19	81	18	56	44	2	2	51	1.27
22260--22328	30	2.3	29	81	16	79	52	2	1	43	1.25
33792--33867	40	1.9	40	88	0	116	40	21	21	17	1.91
33837--34070	41	5.7	41	83	3	267	31	20	30	17	1.96
34009--34132	62	2.0	62	90	0	194	28	23	30	17	1.97
40763--40854	43	2.1	43	89	0	139	25	21	27	26	2.00
40840--40879	21	1.9	21	94	0	71	15	15	30	40	1.87
40762--40961	107	1.9	107	86	4	287	27	20	25	27	1.99
40861--40961	43	2.3	43	93	0	166	28	19	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49045--49136	43	2.1	43	89	0	139	25	21	27	26	2.00
49122--49161	21	1.9	21	94	0	71	15	15	30	40	1.87
49044--49243	107	1.9	107	86	4	287	27	20	25	27	1.99
49143--49243	43	2.3	43	93	0	166	28	19	21	29	1.98
57327--57418	43	2.1	43	89	0	139	25	21	27	26	2.00
57404--57443	21	1.9	21	94	0	71	15	15	30	40	1.87
57326--57525	107	1.9	107	86	4	287	27	20	25	27	1.99
57425--57525	43	2.3	43	93	0	166	28	19	21	29	1.98
59646--61347	857	2.0	857	92	1	2858	28	13	25	33	1.93
61607--61672	28	2.4	28	82	7	73	51	9	1	37	1.43
67916--67988	37	1.9	38	83	8	96	49	0	12	38	1.41
75466--75516	24	2.0	26	85	7	70	54	0	0	45	0.99
75607--75637	16	1.9	16	93	0	53	45	6	0	48	1.28
79508--79536	12	2.4	12	100	0	58	10	0	20	68	1.18
79957--79996	21	2.0	20	85	14	55	27	12	22	37	1.90
88973--89021	21	2.3	21	82	10	55	8	10	14	67	1.42
88986--89033	21	2.4	19	86	6	60	10	10	6	72	1.26
88986--89033	10	4.9	9	76	18	51	10	10	6	72	1.26
89006--89044	19	2.0	19	85	5	51	10	12	2	74	1.17
89046--89120	23	3.3	23	81	5	73	6	5	20	68	1.33
89046--89120	12	6.3	12	68	3	53	6	5	20	68	1.33
89081--89142	20	2.9	21	85	11	72	8	1	22	67	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89251--89283	10	3.4	10	91	8	50	24	0	3	72	0.98
97399--98231	105	8.0	105	81	5	820	23	16	21	38	1.93
102259--102313	26	2.1	26	100	0	110	18	12	21	47	1.82
105465--105521	24	2.4	24	93	0	96	24	26	24	24	2.00
109585--109653	20	3.3	20	79	4	66	34	7	8	49	1.61
112864--112953	38	2.4	37	76	7	92	45	17	12	24	1.83
112895--113055	34	4.4	36	77	10	132	45	14	13	26	1.81
112893--113359	37	12.8	37	70	15	165	44	13	14	26	1.82
113115--113363	73	3.4	72	77	10	256	45	14	14	25	1.83
116881--116936	29	1.9	29	89	7	87	25	0	28	46	1.53
116894--116950	29	2.0	29	82	6	71	26	3	24	45	1.69
116557--117549	401	2.5	400	84	8	1267	37	6	11	44	1.68
118148--118666	36	14.2	38	77	10	399	37	13	20	28	1.90
118148--118671	74	7.1	74	75	8	405	37	13	20	28	1.91
118657--119086	140	3.1	139	87	1	610	31	22	20	26	1.98
119874--120058	96	1.9	96	84	6	250	35	14	19	30	1.92
120295--120526	30	7.9	29	81	12	149	31	1	28	37	1.67
120308--120587	59	4.7	59	82	5	244	31	3	27	36	1.75
120324--120578	30	8.7	29	80	7	192	31	3	29	35	1.76
128965--128991	4	6.8	4	100	0	54	51	22	0	25	1.48
136045--136069	2	12.5	2	100	0	50	48	0	52	0	1.00
136596--136771	59	3.0	58	70	16	146	25	14	15	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136616--136874	60	4.3	60	81	6	303	25	15	15	43	1.86
136617--136874	119	2.2	119	88	1	374	25	15	15	43	1.87
136616--136859	59	4.1	61	82	3	300	23	16	15	44	1.86
140792--140826	17	2.1	16	89	5	52	54	0	8	37	1.31
140946--141275	93	3.5	91	90	3	500	42	6	3	47	1.47
142052--142202	23	6.5	23	75	12	112	43	19	24	12	1.86
142052--142202	71	2.2	69	80	7	162	43	19	24	12	1.86
145053--145411	170	2.1	173	87	4	521	36	7	4	52	1.49
145210--145277	29	2.3	30	85	12	88	25	5	4	64	1.35

Tables:   1

The End!