Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012438.1 Kokia drynarioides strain JFW-HI SEQ_127442, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2458
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.26

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:805 original size:26 final size:25

Alignment explanation


    Indices: 774--823  Score: 73
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        764 TATCAAATAC

                                      
        774 TTAAATAAAACATCAAAATCCCAAAT
          1 TTAAAT-AAACATCAAAATCCCAAAT

                  *       *         
        800 TTAAATTAACATCATAATCCCAAA
          1 TTAAATAAACATCAAAATCCCAAA

        824 ATAATCTAAC


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  25   16  0.73
  26    6  0.27

ACGTcount: A:0.54, C:0.20, G:0.00, T:0.26


Consensus pattern (25 bp):   
TTAAATAAACATCAAAATCCCAAAT

Found at i:1620 original size:2 final size:2

Alignment explanation


    Indices: 1613--1641  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       1603 TAAACCATAA

                                                       
       1613 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A

       1642 TATATATATA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00


Consensus pattern (2 bp):   
AC

Done.