Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012445.1 Kokia drynarioides strain JFW-HI SEQ_127449, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104294
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32
Warning! 13 characters in sequence are not A, C, G, or T
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--37 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
38 TCACGAATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1212 original size:39 final size:39
Alignment explanation
Indices: 1177--1263 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
1167 TCTCAAATTT
*
1177 AGACACCTTAAAAACAACTATTAAATATGTATCAAAATA
1 AGACACATTAAAAACAACTATTAAATATGTATCAAAATA
*
1216 AGACACATTAAAAACAACTATTAAATATGTATCAAACTA
1 AGACACATTAAAAACAACTATTAAATATGTATCAAAATA
1255 AGACACATT
1 AGACACATT
1264 TAATAACTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.53, C:0.16, G:0.06, T:0.25
Consensus pattern (39 bp):
AGACACATTAAAAACAACTATTAAATATGTATCAAAATA
Found at i:2604 original size:429 final size:426
Alignment explanation
Indices: 1588--7727 Score: 6842
Period size: 429 Copynumber: 14.3 Consensus size: 426
1578 TGGCCGTATC
* * * *
1588 ACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAAAGCTCAGAAAATTGCTTGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCA-AAAATTGC-TGAAGG
* * * *
1653 AATGGATCGTCTTGAATACTTTATGGAACTGAAATTATAAAAGAACTCATAAAAGTTTGACAAGT
64 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * *
1718 TCAGAAGTTCGTCCAAGAACC-A-AGAGAAACAATTTTCACGTAAATAAGTTTTTGATTCAAAGA
129 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * * * ** *
1781 CCAAAACTTGTTT-CTAAAATGACAAAGTGTTTAGACCAAATGCTTCTATTTCTCGAAAATAGAA
194 CCAAAACTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * * * *
1845 TGTTCAGAAAATTTCTCGAAGGAATGGGTCATCTTGAATACATTAAGGAACCAAAGTTATGAAAG
258 TGTTCA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * *
1910 AACTCGTAAAAGTTT-AACTAA-TTCGAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTATTAC
322 AACTCGTAAAAGTTTGAA--AAGTTCGGAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCAC
* *
1973 GTAAATAAGTATTTAATTTAAAGACCAAAACTTGTTTACAAAATG
383 GTAAATAAGT-TTTTATTCAAAGACCAAAACTTGTTTACAAAATG
* * * * * *
2018 ACAAACAATTTAGA-AAAATGATGCGATTTCCCGAGCATATAGTAT-TT-AGAAAGTTACTCGAA
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAG-A-ATGGAATGTTCA-AAAATTGCT-GAA
* * * * * *
2080 GGAATGTATCTTCTTGAAAACTGTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGACAA
62 GGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * *
2145 GTTCGAAAGTTCGTCTAAGAACC-A-AGAGAAACAATTCTCATGTAAATAAGTATTTAATTCAAA
127 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * *
2208 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAACGATGCAATTTCCTGAGCATGGA
192 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGA
* * ** *
2273 ATGCTCGAAAAATTACTCGAAGGAATGGATAATCTTGAATACTATAAGGAACC-AAGTTATAAAA
257 ATGTTC-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * *
2337 GAACTCGTAAAAGTTTGAAAAGTTCGAAAGTTCGCCCAACAGCCAAGAGAAACAATTCTCACGTA
321 GAACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTA
*
2402 AATAAGTTTTCGTATT-AAAGTCCAAAACTTGTTTACAAAATG
386 AATAAGTTTT--TATTCAAAGACCAAAACTTGTTTACAAAATG
* * * **
2444 AAAAACTATTCAGACTAAATGATGCGATTTCTTGAGAATGGAATGTTCAAAAATTGCTGAAAGGA
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAATTGCTG-AAGGA
* * * *
2509 ATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGAAAATTT
65 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA-GT
* *
2574 TTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGA
129 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * ** * * *
2639 CCAAAACTTATTTACAAAATGAAAAAAAATTTAGA--AAATTTATGTGATTTCCCGAGCATAGAA
194 CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAA
* * * * * *
2702 TTTTTAGAAAGTTGGTCGAAGGAATGTATCGTCTTGAATACTGTAAGGAACCGAAGTTATAAAAG
258 TGTTCA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * *
2767 AACTCGTAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAAAAAATTCTCACGTAA
322 AACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAA
* * **
2832 ATAAGTTTTTGATTCAATGACCAAAACTTGTTTCCAAAAAA
387 ATAAGTTTTT-ATTCAAAGACCAAAACTTGTTTACAAAATG
* * * * * * *
2873 ACAAACTATTTATACCGAATGCTGCTATTTCCCGAAAATAGAATGTTTAGAAAATTGCTTGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCA-AAAATTGC-TGAAGG
* * * * *
2938 AATGAATCGTCTTGAATACCTTAAGGAACGGAAGTTATGAAAGAACTCGTAAAAGTTTGACTAGT
64 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * * * * *
3003 TTGAAAGTTCATCCAAGAACCAAGAGAGAGACAATTCCCTCGTAAATAAGTTTTTAATTCAAACA
129 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * *
3068 ACAAAATCTT-TTTACAAAATGACAAACTAGTTAGACCAAATGAAGGGATTTCCCGAGCATGGAA
194 CCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * * ** *
3132 TGTTCGAAAAATTTCTCGAAGGTATGGATCGTCTTGAATACTTTATGAAACTAAAATTATAAAAG
258 TGTTC-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * * * * **
3197 AACTAGTAAAAGTTTGACAAGTTTGGAAGTTCGTCGAAGAACCAAAAGGGAAACAATTATCATAT
322 AACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACC--AAGAGAAACAATTCTCACGT
* * *
3262 AAATAAGTATTTAATTCAAAGACCAAAAGTTGTTTAGAAAATG
385 AAATAAGT-TTTTATTCAAAGACCAAAACTTGTTTACAAAATG
* * * *
3305 ATAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTTAAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC-AAAAATTGC-TGAAGG
* * * * * *
3370 AATGGATCGTCTTGTATACTATAAGGAACC-AAGTTAAAAAAGAACTTGTAAAAGTATGACAATT
64 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * * * *
3434 TTGGAAGTTCATCCAAAAACCAAGATA-AAA-AATTCTCAGGTAAATAAGTTTTTGATTCAAAGA
129 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * *
3497 CCAAAACTTGTTTACAAAACGAAAAACTATTTAGACTAAATGATGCGATTTCCCGAGAATGGAAT
194 CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * *
3562 GTTC----CTTGCTCAAAGGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTATAAAAAAA
259 GTTCAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
* ** *
3623 CTCGTAAAAGTTTGAAAACTTTTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAA
324 CTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAA
* * *
3688 ATAAGTTTTTAATTTAATGACCAAAACTTGTTTACAAAATA
387 ATAAGTTTTT-ATTCAAAGACCAAAACTTGTTTACAAAATG
* * ** *
3729 ACAAACTATTTACACTAAATGATGCGATTTCTTGAGAATGGAATGTTCAAAAATTGCTTAAGCGA
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAATTGCTGAAG-GA
* * * * * *
3794 ATGGATCGTCTTGAAGACATTAAGGAACCGAAGTTATAAAAGAACTTGTAGAAGTCTGAAAAGTT
65 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * *
3859 TGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTTAAAGAC
130 CGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* ** ** * *
3924 CAAAACTTGTTTACAAAATGACAAACAATTTAGAAAAAATGATGTC-ATTTTTCAAGCATAGAAT
195 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCCCGAGCATGGAAT
* * * * * ** *
3988 GTTTAGAAAGTTGCTGGAAGGAATGTATCATCTTGAATACTACAAGGAACCGAAGTTATAAAATA
259 GTTCA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
** * * * *
4053 ACTCGTAAAAGTTTGACTAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACATTTCTCAGGTAAA
323 ACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAA
* * *
4118 TAATTTTTTTATTCAAAGACCAGAACTTGTTTCCAAAATG
388 TAA-GTTTTTATTCAAAGACCAAAACTTGTTTACAAAATG
* * *** * * * *
4158 ACAAACTATTTAGACTAAATGCTATTATTTCCCAAGAATAGAATATTTAGAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCA-AAAATTGCT-GAAGG
* *
4223 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATGAAAGAACTCGTAAAAGTTTGACTAGT
64 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * *
4288 TCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAACA
129 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* ** *
4353 ACAAAACCTT-TTTAC-AAATGACAAACTATTTAGACCAAATGATGCGATTTGTCGAGCATGAAA
194 CCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * ** *
4416 TGTTCAGAAAATTGCTCGAAGGAATGGATCGTGTTGAATACTTTATGGAATTGAAATTATAAAAG
258 TGTTCA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * * *
4481 AAAAT-GTAAAAGTTT-AACAAGTTCGGAAGTTCGTCCCAGAACCAAAAGTGAAAAAATTATCAC
322 -AACTCGTAAAAGTTTGAA-AAGTTCGGAAGTTCGTCCAAGAACC--AAGAGAAACAATTCTCAC
* * * * * * * *
4544 GTAAGTAAGTATTTAATTCAAGGACTAATAGTTCTTTACAAAATA
383 GTAAATAAGT-TTTTATTCAAAGACCAAAACTTGTTTACAAAATG
* * * * * **
4589 AAAAACTATTTAGAACAAATTATGTGATTTCCCGAGCATGGAATGCTTGGAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATG-TTCAAAAATTGCT-GAAGG
* * * *
4654 AATGGATCGTCTTGAATACTGTAAGAAACC-AAGTTATAAAAGAACTCATAAAAGTTTGAAAAGT
64 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * *** *
4718 TCGGAAGTTCGTCCAACAGCC-A-AGAGAAACAATTCTCATGTAAATAAGTTTTCGTTTTAAAGA
129 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * *
4781 ACAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA-GATGCGATTTCTCGAGAATGGAAT
194 CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* **
4845 GTTCAAAAATTACTTAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
259 GTTCAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
* *
4910 CTCGTAAAAGTTTGAAAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCATGTAA
324 CTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA-A-ACAATTCTCACGTAA
* * *
4975 ATAAGTTTTTAATTTAATGACCAAAACTTGTTTATAAAATG
387 ATAAGTTTTT-ATTCAAAGACCAAAACTTGTTTACAAAATG
* * * * * ** * * *
5016 ACAAACAATTTAGA-AAAATAATGCGATTTCCCAAGCATATAATATTTAGAAAGTTGCTAGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCA-AAAATTGCT-GAAGG
* * * * *
5080 AATGTATCGTCTTGAAT-GTTGTATGAAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
64 AATGGATCGTCTTGAATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * *
5144 TTCGAAAGTTTGTCCAAGAACC-A-AGAGAAACAATTATCACGTAAATAAGTATTTAATTCAAGG
128 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * *
5207 ACCAAAAGTTCTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAA
193 ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * *
5272 TGCTCAAAAAATTGCTCGAAGGAATGGATTGTCTTGAATACTGTAAGGAACC-AAGTTATAAAAG
258 TGTTC-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * *
5336 AACTCATAAAAGTTTGAAAAGTTCGGAACTTCGTCCAACAACCAAGAGAAACAATTCTCATGTAA
322 AACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAA
* *
5401 ATAAGTTTTCGATTTAAAGACCAAAACTTGTTTAC-AAATG
387 ATAAGTTTT-TATTCAAAGACCAAAACTTGTTTACAAAATG
* * * * * * * *
5441 AAAAACTGTTTAGACTAAATGATACGATTTCCCGA-AATGGAATGGTCAAAAACTACTCAAAGGA
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAATTGCT-GAAGGA
* * * * * *
5505 AT-GAGTCGTCTTGAATTCTTTTAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTAAAAAGT
65 ATGGA-TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * *
5569 TTGGAAGTTCATCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTTAAAGA
129 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * *
5634 CCAAAACTTGTTTACAAAATGACAAA-TAATTTAGA-AAAATGATGCGATTTCCCGGGCATAGAA
194 CCAAAACTTGTTTACAAAATGACAAACT-ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * ** * * **
5697 TATTTAGAAAGCTACTCGAAGGAATGTATCGTCTTGAATACCGTAAGGAACC-AAGTTATAAAAG
258 TGTTCA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * *
5761 AACTCGTAAAAGTTTGAAAAGTTTGGAAGTTCGTCCAACAGCCAAGAGAAACAATTCTCACGTAA
322 AACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAA
* *
5826 ATAAGTTTTTGTTTTAAAGACCAAAACTTGTTTACAAAATG
387 ATAAGTTTTT-ATTCAAAGACCAAAACTTGTTTACAAAATG
* * * * *
5867 AAAAACTATTTAGACTAAATGATGCGATTTCCCAAGAATAGAATGTTCAAAAATTGCTCAAAGGA
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAATTGCT-GAAGGA
* * * *
5932 ATGGATCGTCTTCAATACTTTAAGGAACCGAAGTTATAAAAAAACTCGTAAAAATTTGAAAAGTT
65 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * * *
5997 TGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAACTTTTTAATTTAAAGAC
130 CGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * ** ** * *
6062 CAAAACTTGTTTACAAAATGACAAACAATTTATA-AAAATGATTTGATTTTTCGAGCATAGAATT
195 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * *
6126 TTTAGAAAGTTGCTCGAAGGAATGTATTGTCTTGAATACTGTT-AGGAACCGAAGTTATAAAAGA
260 TTCA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAACCGAAGTTATAAAAGA
* *
6190 ACTCGTAAAAGTTTGATAAA-TTCAGAAGTTCGTCCAAGAACCAAGAGAAAAAATTCTCACGTAA
323 ACTCGTAAAAGTTTGA-AAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAA
* *
6254 ATAAGTTTTTGATTTAAAGACCAAAACTTGTTTCCAAAATG
387 ATAAGTTTTT-ATTCAAAGACCAAAACTTGTTTACAAAATG
* * *
6295 ACAAACTATTTAGACCAAATGTTGCTATTTCCCGAGAATAGAATGTTCAGAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCA-AAAATTGCT-GAAGG
* * * * *
6360 AATGGATCATCTTGAATACATTAAGGAACTGAAGGTATGAAAGAACTCGTAAAAGTTTGA-ATAG
64 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA-AG
* * * * *
6424 TTCGAAAGTTCGTCCAAGAACTAATAGAGAAACAATTCTCACTTAAATAAGTTTTTAATTCAAAC
128 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
** * * * * *
6489 AATAAAACCTATTTAGAAAATGACAAACTATTTAGACCAAATAATGCGATTTCCTGAGCATGGAA
193 ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * * *
6554 TGCTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTATGGAACTGAAATTATAAAAG
258 TGTTC-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * * *
6619 AACTCGTAAGAGTTT-AACATGTTCGGAGGTTTGTCCAAGAACCAAAAGAGAAACAATTCTCATG
322 AACTCGTAAAAGTTTGAA-AAGTTCGGAAGTTCGTCCAAGAACC--AAGAGAAACAATTCTCACG
* *
6683 TAAATAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
384 TAAATAAGT-TTTTATTCAAAGACCAAAACTTGTTTACAAAATG
* * *
6727 ACAAACTATTTAGGCCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC-AAAAATTGCT-GAAGG
* * * *
6792 AATGGATTGTCTTGAATA-TTGTAAGGGACC-AAGTTATAAAAGAACTTGTAAAAGTTTGAAAAG
64 AATGGATCGTCTTGAATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* ** * * * * *
6855 TTCGGAAGTTCGTCCAACAGTCAAGAG-GAAA-AATTTTGACGTAAATAAGTTTTCATTTTAAAG
128 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * * * * *
6918 ACTAAAACTTGTTTACAAAATAAAAAATTATTTAGACTAAATGATACGATTTCTCGAGAATGGAA
193 ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* ** *
6983 TGTTCAAAAATCGCTTAAAGGAATGGATCGTCTTGAATAATTTAAGGAACCGAAGTTATAAAAGA
258 TGTTCAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
* ** * *
7048 ACTCGTAAAAGTTTGACAAGTTTAGAAGCTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
323 ACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTA
* * * *
7113 AATAAGTTTATGATTCAAAGACAAAAACTTTTTTCCAAAATG
386 AATAAGTTT-TTATTCAAAGACCAAAACTTGTTTACAAAATG
* * * * *
7155 ACAAACTATTTAGACCAAATGCTGCTATTTGCCGAGAATAGAATGTTCAGAAAATTGCTTGAAAG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCA-AAAATTGC-TGAAGG
* * *
7220 AATGGATCGTCTTGAATACATTAAGGAACCGAAGTTATGAAAGAACTCGTAAAAGTTT-ACTAGT
64 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * * * *
7284 TCGAAAGTTCGTCCAAGAACTAATAGAGAAACAATTCTCACGTAAACAAGTTTTTACTTCAAACA
129 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * *
7349 ACAAAACCTT-TTTACAAAATGACAAACTATTTAGACCAAATGATACGATTTCCCAAGCATGGAA
194 CCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * * *
7413 TGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTATGGCACTGAAATTATAAAAG
258 TGTTC-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* ** * *
7478 AACTCGTAAATGTTTGACTAGTTCGGAGGTTCGTCCAAGAACCAAAAGAGAACAATTCTCACGTA
322 AACTCGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA-AACAATTCTCACGTA
* * *
7543 AATAAGTATTTAATTCAAAGACGAAAAGTTGTTTACAAAATG
386 AATAAGT-TTTTATTCAAAGACCAAAACTTGTTTACAAAATG
* * * ** *
7585 ACAATCTAATTATACCAAATGATGCGATTTCATGAGCATGGAATGTTCGAAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTC-AAAAATTGCT-GAAGG
* * * *
7650 AATGGATCGTCTTGAATACTTTATGGAACTGAAATTGTAAAAGAACTCGTAAAAGTTTGACAAGT
64 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
7715 TCGGAAGTTCGTC
129 TCGGAAGTTCGTC
7728 TGATATGAAA
Statistics
Matches: 4828, Mismatches: 770, Indels: 223
0.83 0.13 0.04
Matches are distributed among these distances:
422 4 0.00
423 41 0.01
424 306 0.06
425 216 0.04
426 447 0.09
427 549 0.11
428 664 0.14
429 1169 0.24
430 731 0.15
431 433 0.09
432 262 0.05
433 6 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (426 bp):
ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCAAAAATTGCTGAAGGAA
TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
GGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGT
TCAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
CGTAAAAGTTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAA
GTTTTTATTCAAAGACCAAAACTTGTTTACAAAATG
Found at i:2657 original size:216 final size:215
Alignment explanation
Indices: 1588--7727 Score: 6958
Period size: 215 Copynumber: 28.7 Consensus size: 215
1578 TGGCCGTATC
* * * *
1588 ACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAAAGCTCAGAAAATTGCTTGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAGG
* * * * *
1653 AATGGATCGTCTTGAATACTTTATGGAACTGAAATTATAAAAGAACTCATAAAAGTTTGACAAGT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * *
1718 TCAGAAGTTCGTCCAAGAACC-A-AGAGAAACAATTTTCACGTAAATAAGTTTTTGATTCAAAGA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
1781 CCAAAACTTGTTT-CTAAAATG
195 CCAAAACTTGTTTAC-AAAATG
* * * * * * ** * *
1802 ACAAAGTGTTTAGACCAAATGCTTCTATTTCTCGAAAATAGAATGTTCAGAAAATTTCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAGG
* * * * *
1867 AATGGGTCATCTTGAATACATTAAGGAACCAAAGTTATGAAAGAACTCGTAAAAGTTT-AACTAA
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAA--AA
* * * * * *
1931 -TTCGAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTATTACGTAAATAAGTATTTAATTTAAA
128 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
1995 GACCAAAACTTGTTTACAAAATG
193 GACCAAAACTTGTTTACAAAATG
* * ** * * * * *
2018 ACAAACAATTTAGA-AAAATGATGCGATTTCCCGAGCATATAGTATTTAGAAAGTTACTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAGG
* * * * * * *
2082 AATGTATCTTCTTGAAAACTGTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * * *
2147 TCGAAAGTTCGTCTAAGAACC-A-AGAGAAACAATTCTCATGTAAATAAGTATTTAATTCAAAGA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
*
2210 CCAAAAGTTGTTTACAAAATG
195 CCAAAACTTGTTTACAAAATG
* * * * *
2231 ACAAACTATTTAGACCAAACGATGCAATTTCCTGAGCATGGAATGCTCGAAAAATTACTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGCTCGAAGG
** *
2296 AATGGATAATCTTGAATACTATAAGGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * * *
2360 TCGAAAGTTCGCCCAACAGCC-A-AGAGAAACAATTCTCACGTAAATAAGTTTTCGT-ATT-AAA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT--TAATTCAAA
*
2421 GTCCAAAACTTGTTTACAAAATG
193 GACCAAAACTTGTTTACAAAATG
* * * ** *
2444 AAAAACTATTCAGACTAAATGATGCGATTTCTTGAGAATGGAATGTTCAAAAATTGCT-GAAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCG-AAGG
* * *
2508 AATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGAAAATT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAA-G
* *
2573 TTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAG
129 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
*
2638 ACCAAAACTTATTTACAAAATG
194 ACCAAAACTTGTTTACAAAATG
* ** * * * * * * *
2660 AAAAAAAATTTAGA--AAATTTATGTGATTTCCCGAGCATAGAATTTTTAGAAAGTTGGTCGAAG
1 ACAAACTATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAG
* * *
2723 GAATGTATCGTCTTGAATACTGTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
64 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAG
* * * *
2788 TTTGGAAGTTCATCCAAGAACCAAGAGA-AAA-AATTCTCACGTAAATAAGTTTTTGATTCAATG
129 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* **
2851 ACCAAAACTTGTTTCCAAAAAA
194 ACCAAAACTTGTTTACAAAATG
* * * * ** * * *
2873 ACAAACTATTTATACCGAATGCTGCTATTTCCCGAAAATAGAATGTTTAGAAAATTGCTTGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAGG
* * * * **
2938 AATGAATCGTCTTGAATACCTTAAGGAACGGAAGTTATGAAAGAACTCGTAAAAGTTTGACTAGT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * * * * * *
3003 TTGAAAGTTCATCCAAGAACCAAGAGAGAGACAATTCCCTCGTAAATAAGTTTTTAATTCAAACA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
*
3068 ACAAAATCTT-TTTACAAAATG
195 CCAAAA-CTTGTTTACAAAATG
* * * *
3089 ACAAACTAGTTAGACCAAATGAAGGGATTTCCCGAGCATGGAATGTTCGAAAAATTTCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGCTCGAAGG
* * * ** * * *
3154 TATGGATCGTCTTGAATACTTTATGAAACTAAAATTATAAAAGAACTAGTAAAAGTTTGACAAGT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * * * * ** *
3219 TTGGAAGTTCGTCGAAGAACCAAAAGGGAAACAATTATCATATAAATAAGTATTTAATTCAAAGA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* *
3284 CCAAAAGTTGTTTAGAAAATG
195 CCAAAACTTGTTTACAAAATG
* * **
3305 ATAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTTAAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGCTCGAAGG
* * * * * * *
3370 AATGGATCGTCTTGTATACTATAAGGAACC-AAGTTAAAAAAGAACTTGTAAAAGTATGACAATT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * * * * *
3434 TTGGAAGTTCATCCAAAAACCAAGATA-AAA-AATTCTCAGGTAAATAAGTTTTTGATTCAAAGA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
*
3497 CCAAAACTTGTTTACAAAACG
195 CCAAAACTTGTTTACAAAATG
* * * * *
3518 AAAAACTATTTAGACTAAATGATGCGATTTCCCGAGAATGGAATGTTC----CTTGCTCAAAGGA
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAAGGA
* * *
3579 ATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTATAAAAAAACTCGTAAAAGTTTGAAAACTT
66 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTT
** * * *
3644 TTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTTAATGAC
131 CGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
*
3709 CAAAACTTGTTTACAAAATA
196 CAAAACTTGTTTACAAAATG
* * ** * *
3729 ACAAACTATTTACACTAAATGATGCGATTTCTTGAGAATGGAATGTTCAAAAATTGCT-TAAGCG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAAG-G
* * * * *
3793 AATGGATCGTCTTGAAGACATTAAGGAACCGAAGTTATAAAAGAACTTGTAGAAGTCTGAAAAGT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * *
3858 TTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTTAAAGA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
3923 CCAAAACTTGTTTACAAAATG
195 CCAAAACTTGTTTACAAAATG
* ** ** * * * * *
3944 ACAAACAATTTAGAAAAAATGATGTC-ATTTTTCAAGCATAGAATGTTTAGAAAGTTGCTGGAAG
1 ACAAACTATTTAGACCAAATGATG-CGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAG
* * ** * **
4008 GAATGTATCATCTTGAATACTACAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTTTGACTAG
64 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAG
* * * * * *
4073 TTCGAAAGTTCATCCAAGAACC-A-AGAGAAACATTTCTCAGGTAAATAATTTTTTTATTCAAAG
129 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* *
4136 ACCAGAACTTGTTTCCAAAATG
194 ACCAAAACTTGTTTACAAAATG
* * *** * * * * *
4158 ACAAACTATTTAGACTAAATGCTATTATTTCCCAAGAATAGAATATTTAGAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAGG
* **
4223 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATGAAAGAACTCGTAAAAGTTTGACTAGT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * * *
4288 TCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAACA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
*
4353 ACAAAACCTT-TTTAC-AAATG
195 CCAAAA-CTTGTTTACAAAATG
** *
4373 ACAAACTATTTAGACCAAATGATGCGATTTGTCGAGCATGAAATGTTCAGAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAGG
* * ** * *
4438 AATGGATCGTGTTGAATACTTTATGGAATTGAAATTATAAAAGAAAAT-GTAAAAGTTT-AACAA
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG-AACTCGTAAAAGTTTGAA-AA
* * * * * * * *
4501 GTTCGGAAGTTCGTCCCAGAACCAAAAGTGAAAAAATTATCACGTAAGTAAGTATTTAATTCAAG
128 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * * *
4566 GACTAATAGTTCTTTACAAAATA
193 GACCAAAACTTGTTTACAAAATG
* * * * **
4589 AAAAACTATTTAGAACAAATTATGTGATTTCCCGAGCATGGAATGCTTGGAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCAAAAATTGCTCGAAGG
* * *
4654 AATGGATCGTCTTGAATACTGTAAGAAACC-AAGTTATAAAAGAACTCATAAAAGTTTGAAAAGT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * * *** *
4718 TCGGAAGTTCGTCCAACAGCC-A-AGAGAAACAATTCTCATGTAAATAAGTTTTCGTTTTAAAGA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
*
4781 ACAAAACTTGTTTACAAAATG
195 CCAAAACTTGTTTACAAAATG
* * * * **
4802 AAAAACTATTTAGACCAAA-GATGCGATTTCTCGAGAATGGAATGTTCAAAAATTACTTAAAGGA
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAAGGA
4866 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTT
66 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTT
* * * * *
4931 TGGAAGTTCGTCCAAGAACCAAGAGAGATACAATTCTCATGTAAATAAGTTTTTAATTTAATGAC
131 CGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
*
4996 CAAAACTTGTTTATAAAATG
196 CAAAACTTGTTTACAAAATG
* * * * ** * * * *
5016 ACAAACAATTTAGA-AAAATAATGCGATTTCCCAAGCATATAATATTTAGAAAGTTGCTAGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAGG
* * * * * *
5080 AATGTATCGTCTTGAAT-GTTGTATGAAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
65 AATGGATCGTCTTGAATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAG
* * * * *
5144 TTCGAAAGTTTGTCCAAGAACC-A-AGAGAAACAATTATCACGTAAATAAGTATTTAATTCAAGG
129 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* *
5207 ACCAAAAGTTCTTTACAAAATG
194 ACCAAAACTTGTTTACAAAATG
* *
5229 ACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGCTCAAAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGCTCGAAGG
* * *
5294 AATGGATTGTCTTGAATACTGTAAGGAACC-AAGTTATAAAAGAACTCATAAAAGTTTGAAAAGT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * * ** *
5358 TCGGAACTTCGTCCAACAACC-A-AGAGAAACAATTCTCATGTAAATAAGTTTTCGATTTAAAGA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
5421 CCAAAACTTGTTTAC-AAATG
195 CCAAAACTTGTTTACAAAATG
* * * * * * * * *
5441 AAAAACTGTTTAGACTAAATGATACGATTTCCCGA-AATGGAATGGTCAAAAACTACTCAAAGGA
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAAGGA
* * * * *
5505 AT-GAGTCGTCTTGAATTCTTTTAGGAATCGAAGTTATAAAAGAACTCATAAAAGTTTAAAAAGT
66 ATGGA-TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * * *
5569 TTGGAAGTTCATCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTTAAAGA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
5634 CCAAAACTTGTTTACAAAATG
195 CCAAAACTTGTTTACAAAATG
* * * * * ** *
5655 ACAAA-TAATTTAGA-AAAATGATGCGATTTCCCGGGCATAGAATATTTAGAAAGCTACTCGAAG
1 ACAAACT-ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAG
* **
5718 GAATGTATCGTCTTGAATACCGTAAGGAACC-AAGTTATAAAAGAACTCGTAAAAGTTTGAAAAG
64 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAG
* * * ** *
5782 TTTGGAAGTTCGTCCAACAGCC-A-AGAGAAACAATTCTCACGTAAATAAGTTTTTGTTTTAAAG
129 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
5845 ACCAAAACTTGTTTACAAAATG
194 ACCAAAACTTGTTTACAAAATG
* * * * * *
5867 AAAAACTATTTAGACTAAATGATGCGATTTCCCAAGAATAGAATGTTCAAAAATTGCTCAAAGGA
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAAGGA
* * *
5932 ATGGATCGTCTTCAATACTTTAAGGAACCGAAGTTATAAAAAAACTCGTAAAAATTTGAAAAGTT
66 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTT
* * * *
5997 TGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAACTTTTTAATTTAAAGAC
131 CGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
6062 CAAAACTTGTTTACAAAATG
196 CAAAACTTGTTTACAAAATG
* * * ** ** * * * *
6082 ACAAACAATTTATA-AAAATGATTTGATTTTTCGAGCATAGAATTTTTAGAAAGTTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAGG
* *
6146 AATGTATTGTCTTGAATACTGTT-AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGATAAA
65 AATGGATCGTCTTGAATACT-TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-AAA
* * *
6210 -TTCAGAAGTTCGTCCAAGAACCAAGAGA-AAA-AATTCTCACGTAAATAAGTTTTTGATTTAAA
128 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
*
6272 GACCAAAACTTGTTTCCAAAATG
193 GACCAAAACTTGTTTACAAAATG
* * * *
6295 ACAAACTATTTAGACCAAATGTTGCTATTTCCCGAGAATAGAATGTTCAGAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAGG
* * * * * *
6360 AATGGATCATCTTGAATACATTAAGGAACTGAAGGTATGAAAGAACTCGTAAAAGTTTGAATAGT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * * * *
6425 TCGAAAGTTCGTCCAAGAACTAATAGAGAAACAATTCTCACTTAAATAAGTTTTTAATTCAAACA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
** * * *
6490 ATAAAACCTATTTAGAAAATG
195 CCAAAACTTGTTTACAAAATG
* * *
6511 ACAAACTATTTAGACCAAATAATGCGATTTCCTGAGCATGGAATGCTCGAAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGCTCGAAGG
* * * * * *
6576 AATGGATCATCTTGAATACTTTATGGAACTGAAATTATAAAAGAACTCGTAAGAGTTT-AACATG
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAA-AAG
* * * * *
6640 TTCGGAGGTTTGTCCAAGAACCAAAAGAGAAACAATTCTCATGTAAATAAGTATTTAATTCAAAG
129 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
*
6705 ACCAAAAGTTGTTTACAAAATG
194 ACCAAAACTTGTTTACAAAATG
* *
6727 ACAAACTATTTAGGCCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGCTCGAAGG
* * *
6792 AATGGATTGTCTTGAATA-TTGTAAGGGACC-AAGTTATAAAAGAACTTGTAAAAGTTTGAAAAG
65 AATGGATCGTCTTGAATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAG
* ** * * * * *
6855 TTCGGAAGTTCGTCCAACAGTCAAGAG-GAAA-AATTTTGACGTAAATAAGTTTTCATTTTAAAG
129 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* *
6918 ACTAAAACTTGTTTACAAAATA
194 ACCAAAACTTGTTTACAAAATG
* * * * * * * **
6940 AAAAATTATTTAGACTAAATGATACGATTTCTCGAGAATGGAATGTTCAAAAATCGCTTAAAGGA
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAAGGA
* *
7005 ATGGATCGTCTTGAATAATTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
66 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTT
** * * * *
7070 TAGAAGCTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTATGATTCAAAGAC
131 CGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * *
7135 AAAAACTTTTTTCCAAAATG
196 CAAAACTTGTTTACAAAATG
* * * * * * *
7155 ACAAACTATTTAGACCAAATGCTGCTATTTGCCGAGAATAGAATGTTCAGAAAATTGCTTGAAAG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA-AAAATTGCTCGAAGG
* * **
7220 AATGGATCGTCTTGAATACATTAAGGAACCGAAGTTATGAAAGAACTCGTAAAAGTTT-ACTAGT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * * * * *
7284 TCGAAAGTTCGTCCAAGAACTAATAGAGAAACAATTCTCACGTAAACAAGTTTTTACTTCAAACA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
*
7349 ACAAAACCTT-TTTACAAAATG
195 CCAAAA-CTTGTTTACAAAATG
* *
7370 ACAAACTATTTAGACCAAATGATACGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGCTCGAAGG
* * * * * * **
7435 AATGGATCATCTTGAATACTTTATGGCACTGAAATTATAAAAGAACTCGTAAATGTTTGACTAGT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
* * *
7500 TCGGAGGTTCGTCCAAGAACCAAAAGAG-AACAATTCTCACGTAAATAAGTATTTAATTCAAAGA
130 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* *
7564 CGAAAAGTTGTTTACAAAATG
195 CCAAAACTTGTTTACAAAATG
* * * **
7585 ACAATCTAATTATACCAAATGATGCGATTTCATGAGCATGGAATGTTCGAAAAATTGCTCGAAGG
1 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AAAAATTGCTCGAAGG
* * * * *
7650 AATGGATCGTCTTGAATACTTTATGGAACTGAAATTGTAAAAGAACTCGTAAAAGTTTGACAAGT
65 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGT
7715 TCGGAAGTTCGTC
130 TCGGAAGTTCGTC
7728 TGATATGAAA
Statistics
Matches: 5018, Mismatches: 814, Indels: 187
0.83 0.14 0.03
Matches are distributed among these distances:
208 37 0.01
209 53 0.01
210 38 0.01
211 195 0.04
212 293 0.06
213 977 0.19
214 905 0.18
215 1384 0.28
216 1121 0.22
217 15 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (215 bp):
ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAAGGA
ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTT
CGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
CAAAACTTGTTTACAAAATG
Found at i:10097 original size:213 final size:212
Alignment explanation
Indices: 9526--10315 Score: 935
Period size: 216 Copynumber: 3.7 Consensus size: 212
9516 TTAAAGACCG
* * *
9526 AAGTTATGAAAGAACTCGTAAAAGTTTGACTAGTTCGAAAGTTCATCCAAGAACCAAGAGAAAAG
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAA-
* * *
9591 CAATTCTCACGTAAATAAGCTTTTAATTCAAACAACAAAACCTT-TTTACAAAATGACAAACTAT
65 -AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-CTTGTTTACAAAATGACAAACTAT
* * * * * * *
9655 TTAGACCAAATAATACGACTTCTCGAGCATGGAACGTTAGAAAATTTGCTCGAAGGAATGGATCA
128 TTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCA
*
9720 TCTTGAATACTTTATGGAACTGA
193 TCTTGAATA-TTTAAGGAAC--A
* * * *
9743 AA-TTATAAAAGAACTCGTAAAAGTTTGACATGTTCGTAGGTTTGTCCAAGAACCAAAAGAGAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC--AAGAGAAA
* * * *
9807 CAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAAT
64 AAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* **
9872 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGATTGGATTGT
129 TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCAT
*
9937 CTTGAATATTGTAAGGAACC
194 CTTGAATATT-TAAGGAACA
* * * * * *
9957 AAGTTATAAAATAACTCGTAAAAGATTGAAAAG-TCCAGAAGTTCGTCCAACAGCCAAGAGAAAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAAAA
** * *
10021 AATTCTCACGTAAATAAGTTTTTGTTTTAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTT
65 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
* * * * *
10086 AGACTAAATGATGCGATTTCCCAAGAATGGAATGTTC-AAAAATCGCTCAAAGGAATGGATCATC
130 AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATC
10150 TTGAATAATTTAAGGAATCA
195 TTGAAT-ATTTAAGGAA-CA
* * **
10170 AAGTTATAAAAGAACTCATAAAAGTTTGACAAGTT-TAGAAGCCCGTCCAAGAACCAAGTGAGAA
1 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAA--GAGAA
* * * * *
10234 ACAATTCTCACGTAAATAATTTTTTAATTTAAAGACCAAAACTTGTTTGCAAAATGACAAACAAT
63 AAAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* *
10299 TTGGA-AAAATGATGCGA
128 TTAGACCAAATGATGCGA
10316 ACACTGCGAC
Statistics
Matches: 491, Mismatches: 71, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
212 35 0.07
213 150 0.31
214 16 0.03
215 110 0.22
216 170 0.35
217 2 0.00
218 8 0.02
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (212 bp):
AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAAA
ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
GACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCT
TGAATATTTAAGGAACA
Found at i:18344 original size:50 final size:50
Alignment explanation
Indices: 18290--18538 Score: 302
Period size: 50 Copynumber: 5.0 Consensus size: 50
18280 ATACATGTTC
* *
18290 ACGCTTGTCAGCTTATTTATACATTTACGCTCGCTAGCTTGCACACGTTT
1 ACGCTCGTCAGCTTATTTATGCATTTACGCTCGCTAGCTTGCACACGTTT
** * *
18340 ACGCTCGTCAGAATATTTATGCATTTATGCTTGCTAGCTTGCACACGTTT
1 ACGCTCGTCAGCTTATTTATGCATTTACGCTCGCTAGCTTGCACACGTTT
* * * * * * *
18390 ACGCTCGTCAACTTAATTATGCGTTTACGCTCACCAGCTTACACGCGTTT
1 ACGCTCGTCAGCTTATTTATGCATTTACGCTCGCTAGCTTGCACACGTTT
* * *
18440 ATGCTCATCAGCTTATTTATGCATTTACGCTC-ATAAGCTTGCACACGTTT
1 ACGCTCGTCAGCTTATTTATGCATTTACGCTCGCT-AGCTTGCACACGTTT
* * * *
18490 ACGCTCGTTAGCTTATTTATGCATTTATGCTTGCCAGCTTGCACACGTT
1 ACGCTCGTCAGCTTATTTATGCATTTACGCTCGCTAGCTTGCACACGTT
18539 ATATGTACAT
Statistics
Matches: 164, Mismatches: 33, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
50 164 1.00
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.37
Consensus pattern (50 bp):
ACGCTCGTCAGCTTATTTATGCATTTACGCTCGCTAGCTTGCACACGTTT
Found at i:18430 original size:26 final size:26
Alignment explanation
Indices: 18385--18479 Score: 95
Period size: 26 Copynumber: 3.7 Consensus size: 26
18375 AGCTTGCACA
* *
18385 CGTTTACGCTCGTCAACTTAATTATG
1 CGTTTACGCTCATCAGCTTAATTATG
* * *
18411 CGTTTACGCTCACCAGCTT-A-CACG
1 CGTTTACGCTCATCAGCTTAATTATG
* *
18435 CGTTTATGCTCATCAGCTTATTTATG
1 CGTTTACGCTCATCAGCTTAATTATG
* *
18461 CATTTACGCTCATAAGCTT
1 CGTTTACGCTCATCAGCTT
18480 GCACACGTTT
Statistics
Matches: 54, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
24 19 0.35
25 1 0.02
26 34 0.63
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (26 bp):
CGTTTACGCTCATCAGCTTAATTATG
Found at i:31029 original size:52 final size:52
Alignment explanation
Indices: 30951--31068 Score: 209
Period size: 52 Copynumber: 2.3 Consensus size: 52
30941 TTTCACGTCG
30951 TTCATATACTCACGGTGACACATAGCCACCGGACCGTATAATCCGTAAAGGA
1 TTCATATACTCACGGTGACACATAGCCACCGGACCGTATAATCCGTAAAGGA
* * *
31003 TTCATATACTCACGGTGACACGTAGCCACCGGATCGTATAATCCGTAAAGTA
1 TTCATATACTCACGGTGACACATAGCCACCGGACCGTATAATCCGTAAAGGA
31055 TTCATATACTCACG
1 TTCATATACTCACG
31069 ATGTGATGTG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (52 bp):
TTCATATACTCACGGTGACACATAGCCACCGGACCGTATAATCCGTAAAGGA
Found at i:31825 original size:52 final size:52
Alignment explanation
Indices: 31743--32032 Score: 427
Period size: 52 Copynumber: 5.6 Consensus size: 52
31733 AAAGCTCACA
* *
31743 TCACGATGACACTTAGTCATTGGACTTCTTAATCCGTAAAGGATTCATATAC
1 TCACGATGACACTTAATCATCGGACTTCTTAATCCGTAAAGGATTCATATAC
* *
31795 TCATGATGACACTTAATCATCGGACCTCTTAATCCGTAAAGGATTCATATAC
1 TCACGATGACACTTAATCATCGGACTTCTTAATCCGTAAAGGATTCATATAC
*
31847 TCACGATGACACTTAGTCATCGGACTTCTTAATCCGTAAAGGATTCATATAC
1 TCACGATGACACTTAATCATCGGACTTCTTAATCCGTAAAGGATTCATATAC
* * *
31899 TCACGATGACACTTAATCATCAGACTTCCTAATCTGTAAAGGATTCATATAC
1 TCACGATGACACTTAATCATCGGACTTCTTAATCCGTAAAGGATTCATATAC
* * * * * *
31951 TCATGATAACACTTAATCATCAGACTTTTTAATCTGTAAAGGATTCATAGAC
1 TCACGATGACACTTAATCATCGGACTTCTTAATCCGTAAAGGATTCATATAC
* * *
32003 TCAAGATGACACTTAGTCATCGGACCTCTT
1 TCACGATGACACTTAATCATCGGACTTCTT
32033 CGTTTATGGC
Statistics
Matches: 216, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 216 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (52 bp):
TCACGATGACACTTAATCATCGGACTTCTTAATCCGTAAAGGATTCATATAC
Found at i:32850 original size:40 final size:39
Alignment explanation
Indices: 32795--32873 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 39
32785 GGTTGAAGAA
32795 GATGTTTAAAATCATCCAAATTATCCTTTTTTTAATCTTT
1 GATGTTTAAAATCATCCAAATTATCC-TTTTTTAATCTTT
32835 GATGTTTAAAATCATCCAAATTATCCTTTTTTAATCTTT
1 GATGTTTAAAATCATCCAAATTATCCTTTTTTAATCTTT
32874 ACTTATTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
39 13 0.33
40 26 0.67
ACGTcount: A:0.30, C:0.15, G:0.05, T:0.49
Consensus pattern (39 bp):
GATGTTTAAAATCATCCAAATTATCCTTTTTTAATCTTT
Found at i:39940 original size:22 final size:22
Alignment explanation
Indices: 39912--39955 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
39902 ACGGTTTAGC
39912 AATCTTGGAAAAATCACATATG
1 AATCTTGGAAAAATCACATATG
*
39934 AATCTTGGAAAAATCACGTATG
1 AATCTTGGAAAAATCACATATG
39956 TCCAAGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (22 bp):
AATCTTGGAAAAATCACATATG
Found at i:44568 original size:6 final size:6
Alignment explanation
Indices: 44557--44595 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
44547 TGATCAAAAT
* * *
44557 TGAAAG TGAAAG TGAAAG TGAAAT TGGAAT TGAAAG TGA
1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA
44596 TATGAAATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (6 bp):
TGAAAG
Found at i:53050 original size:12 final size:12
Alignment explanation
Indices: 53035--53069 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
53025 TTTAAAGACC
53035 ATAAAATAAAAT
1 ATAAAATAAAAT
*
53047 ATAAAATAAAGT
1 ATAAAATAAAAT
*
53059 AGAAAATAAAA
1 ATAAAATAAAA
53070 GAAAAAGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (12 bp):
ATAAAATAAAAT
Found at i:53517 original size:35 final size:35
Alignment explanation
Indices: 53471--53540 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
53461 ATTAGTTCCT
*
53471 CATGCTTTCTTTGATCATCAACAAAACAATTTATG
1 CATGCTTTCTTTGATCATCAACAAAACAATATATG
53506 CATGCTTTCTTTGATCATCAACAAAACAATATATG
1 CATGCTTTCTTTGATCATCAACAAAACAATATATG
53541 AAAGCATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (35 bp):
CATGCTTTCTTTGATCATCAACAAAACAATATATG
Found at i:62681 original size:15 final size:15
Alignment explanation
Indices: 62657--62695 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
62647 CAAACCAAAA
62657 AAAT-AAAGGGAAAG
1 AAATAAAAGGGAAAG
62671 AAATAAAAGGGAAAG
1 AAATAAAAGGGAAAG
62686 AAATAAAAGG
1 AAATAAAAGG
62696 TCAATATAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 4 0.17
15 20 0.83
ACGTcount: A:0.67, C:0.00, G:0.26, T:0.08
Consensus pattern (15 bp):
AAATAAAAGGGAAAG
Found at i:67015 original size:21 final size:21
Alignment explanation
Indices: 66990--67033 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
66980 TTATAATTAT
66990 AATTATAATTAA-TAAATAAAC
1 AATTA-AATTAATTAAATAAAC
* *
67011 AATTAACTTAATTAATTAAAC
1 AATTAAATTAATTAAATAAAC
67032 AA
1 AA
67034 CACATGATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (21 bp):
AATTAAATTAATTAAATAAAC
Found at i:69354 original size:27 final size:27
Alignment explanation
Indices: 69323--69377 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
69313 GATGAACTTC
*
69323 TTCACCGCTTAGATATCTCAAATGGGT
1 TTCACCGCTCAGATATCTCAAATGGGT
* *
69350 TTCACCGCTCATATCTCTCAAATGGGT
1 TTCACCGCTCAGATATCTCAAATGGGT
69377 T
1 T
69378 GGTTGTTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (27 bp):
TTCACCGCTCAGATATCTCAAATGGGT
Found at i:70275 original size:20 final size:21
Alignment explanation
Indices: 70243--70287 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
70233 TAAAAAAAAA
70243 TTTATGATATTTAA-AT-ATT
1 TTTATGATATTTAATATAATT
*
70262 TTTATTGATTTTTAATATAATT
1 TTTA-TGATATTTAATATAATT
70284 TTTA
1 TTTA
70288 AATTATGACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 4 0.18
20 9 0.41
21 2 0.09
22 7 0.32
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (21 bp):
TTTATGATATTTAATATAATT
Found at i:70439 original size:32 final size:31
Alignment explanation
Indices: 70391--70450 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 31
70381 TAGTTGACGG
70391 AAAAAAAAATTCAAGTA-TAAATCTAGGACAA
1 AAAAAAAAATTCAAGTACT-AATCTAGGACAA
70422 AAAAAAAAACCTT-AAGTACTAATCTAGGA
1 AAAAAAAAA--TTCAAGTACTAATCTAGGA
70451 GAAGTGAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
31 9 0.35
32 14 0.54
33 3 0.12
ACGTcount: A:0.58, C:0.12, G:0.10, T:0.20
Consensus pattern (31 bp):
AAAAAAAAATTCAAGTACTAATCTAGGACAA
Found at i:74131 original size:12 final size:12
Alignment explanation
Indices: 74116--74141 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74106 AATTATAGAA
74116 ATAATATCATTC
1 ATAATATCATTC
74128 ATAATATCATTC
1 ATAATATCATTC
74140 AT
1 AT
74142 CATGATAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (12 bp):
ATAATATCATTC
Found at i:76429 original size:8 final size:8
Alignment explanation
Indices: 76416--76450 Score: 70
Period size: 8 Copynumber: 4.4 Consensus size: 8
76406 TATTTGTGGT
76416 TAAAATAA
1 TAAAATAA
76424 TAAAATAA
1 TAAAATAA
76432 TAAAATAA
1 TAAAATAA
76440 TAAAATAA
1 TAAAATAA
76448 TAA
1 TAA
76451 TGATGGTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
TAAAATAA
Found at i:77918 original size:83 final size:83
Alignment explanation
Indices: 77761--77928 Score: 246
Period size: 83 Copynumber: 2.0 Consensus size: 83
77751 TATATGAGTG
*
77761 GTCATTGGTTAAATCCGAAAGGATAACCTGACACAATCATTCTGATTCTAATTAGCTAACGAGCG
1 GTCATTGGTTAAATCCGAAAGGATAACCTGACACAATCATTCTGATTCTAATTAGCTAACGAGCA
*
77826 TAAACGTTCTATACTTAC
66 TAAACGTTCTAGACTTAC
* * * * * *
77844 GTCATTGGTTAAATCCGAAAGGATAACCTGACACGATCATTTTGATTCTGATTAGTTGATGAGCA
1 GTCATTGGTTAAATCCGAAAGGATAACCTGACACAATCATTCTGATTCTAATTAGCTAACGAGCA
* *
77909 TAAATGTTCTGGACTTAC
66 TAAACGTTCTAGACTTAC
77927 GT
1 GT
77929 ATTAAATACT
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
83 75 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (83 bp):
GTCATTGGTTAAATCCGAAAGGATAACCTGACACAATCATTCTGATTCTAATTAGCTAACGAGCA
TAAACGTTCTAGACTTAC
Found at i:80024 original size:43 final size:42
Alignment explanation
Indices: 79951--80221 Score: 170
Period size: 43 Copynumber: 6.3 Consensus size: 42
79941 AGCACCGCAA
* * *
79951 TGCATCATCAGATAAACTGAAGGAAA-TATACTGGCACGCATAG
1 TGCATCATCGGATGAACCGAA--AAATTATACTGGCACGCATAG
** * * * *
79994 TGCATCATTAGATGTACCGAAAAATGTATACTGGAACTCGTAG
1 TGCATCATCGGATGAACCGAAAAAT-TATACTGGCACGCATAG
* * ** * * * *
80037 TGTATCATCGAACAAACTGACGAAATTATATTGGCATGCATAG
1 TGCATCATCGGATGAACCGA-AAAATTATACTGGCACGCATAG
* * *
80080 TGCATCATCGGA-CAAGCCAAAACAATTATACTGGCACACATAG
1 TGCATCATCGGATGAA-CCGAAA-AATTATACTGGCACGCATAG
* * * * * *
80123 TGCATCATCGGATGTATCGAAGAATGTATATTGACACTCATAG
1 TGCATCATCGGATGAACCGAAAAAT-TATACTGGCACGCATAG
* * * *
80166 TGCATCATCGGA-CAAGCCAAAACAATTATATTGGCACGTATAG
1 TGCATCATCGGATGAA-CCGAAA-AATTATACTGGCACGCATAG
80209 TGCATCATCGGAT
1 TGCATCATCGGAT
80222 AAATCAAAGC
Statistics
Matches: 172, Mismatches: 46, Indels: 19
0.73 0.19 0.08
Matches are distributed among these distances:
41 3 0.02
42 7 0.04
43 154 0.90
44 8 0.05
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (42 bp):
TGCATCATCGGATGAACCGAAAAATTATACTGGCACGCATAG
Found at i:80110 original size:86 final size:86
Alignment explanation
Indices: 80020--80218 Score: 224
Period size: 86 Copynumber: 2.3 Consensus size: 86
80010 CCGAAAAATG
* * * * *
80020 TATACTGGAACTCGTAGTGTATCATCGAACAAA-CTGACGAAAT-TATATTGGCA-TGCATAGTG
1 TATACTGGAACACATAGTGCATCATCGAACAAATC-GAAG-AATGTATATTGACACT-CATAGTG
80082 CATCATCGGACAAGCCAAAACAAT
63 CATCATCGGACAAGCCAAAACAAT
* * ***
80106 TATACTGGCACACATAGTGCATCATCGGATGTATCGAAGAATGTATATTGACACTCATAGTGCAT
1 TATACTGGAACACATAGTGCATCATCGAACAAATCGAAGAATGTATATTGACACTCATAGTGCAT
80171 CATCGGACAAGCCAAAACAAT
66 CATCGGACAAGCCAAAACAAT
* * **
80192 TATATTGGCACGTATAGTGCATCATCG
1 TATACTGGAACACATAGTGCATCATCG
80219 GATAAATCAA
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
85 3 0.03
86 92 0.95
87 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (86 bp):
TATACTGGAACACATAGTGCATCATCGAACAAATCGAAGAATGTATATTGACACTCATAGTGCAT
CATCGGACAAGCCAAAACAAT
Found at i:80193 original size:129 final size:129
Alignment explanation
Indices: 79977--80220 Score: 321
Period size: 129 Copynumber: 1.9 Consensus size: 129
79967 CTGAAGGAAA
* * * *
79977 TATACTGGCACGCATAGTGCATCATTAGATGTACCGAAAAATGTATACTGGAACTCGTAGTGTAT
1 TATACTGGCACACATAGTGCATCATCAGATGTACCGAAAAATGTATACTGGAACTCATAGTGCAT
* ** *
80042 CATCGAACAAACTGACGAAATTATATTGGCATGCATAGTGCATCATCGGACAAGCCAAAACAAT
66 CATCGAACAAACTCAAAAAATTATATTGGCACGCATAGTGCATCATCGGACAAGCCAAAACAAT
* * * *
80106 TATACTGGCACACATAGTGCATCATCGGATGTATCGAAGAATGTATA-TTGACACTCATAGTGCA
1 TATACTGGCACACATAGTGCATCATCAGATGTACCGAAAAATGTATACTGGA-ACTCATAGTGCA
* * *
80170 TCATCGGACAAGC-CAAAACAATTATATTGGCACGTATAGTGCATCATCGGA
65 TCATCGAACAAACTCAAAA-AATTATATTGGCACGCATAGTGCATCATCGGA
80221 TAAATCAAAG
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
128 5 0.05
129 93 0.95
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (129 bp):
TATACTGGCACACATAGTGCATCATCAGATGTACCGAAAAATGTATACTGGAACTCATAGTGCAT
CATCGAACAAACTCAAAAAATTATATTGGCACGCATAGTGCATCATCGGACAAGCCAAAACAAT
Found at i:81268 original size:25 final size:26
Alignment explanation
Indices: 81229--81287 Score: 102
Period size: 25 Copynumber: 2.3 Consensus size: 26
81219 GAGGTACATA
81229 AGTGCTGAGGAAACAGAAGCACACAC
1 AGTGCTGAGGAAACAGAAGCACACAC
*
81255 AGTGCTG-GGTAACAGAAGCACACAC
1 AGTGCTGAGGAAACAGAAGCACACAC
81280 AGTGCTGA
1 AGTGCTGA
81288 ACAAAAACGC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 24 0.77
26 7 0.23
ACGTcount: A:0.37, C:0.22, G:0.29, T:0.12
Consensus pattern (26 bp):
AGTGCTGAGGAAACAGAAGCACACAC
Found at i:81396 original size:24 final size:26
Alignment explanation
Indices: 81358--81405 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
81348 TCTACATGGG
81358 CATAATCTCTCATAT-TCATCATTTCT
1 CATAATCTCTCATATATCA-CATTTCT
81384 CATAAT-T-TCATATATCACATTT
1 CATAATCTCTCATATATCACATTT
81406 ACATTTCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 11 0.52
25 4 0.19
26 6 0.29
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (26 bp):
CATAATCTCTCATATATCACATTTCT
Found at i:87096 original size:17 final size:18
Alignment explanation
Indices: 87074--87107 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
87064 AGTTTTTATG
87074 AAATTTTAAAAT-TTTTA
1 AAATTTTAAAATATTTTA
87091 AAATTTTAAAATATTTT
1 AAATTTTAAAATATTTT
87108 GTATTAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
AAATTTTAAAATATTTTA
Found at i:91170 original size:26 final size:26
Alignment explanation
Indices: 91128--91289 Score: 180
Period size: 26 Copynumber: 6.2 Consensus size: 26
91118 ATATATATAT
* *
91128 ATATTCGTTTACGCTCGTCAGCTTGA
1 ATATACGTTTACGCTCGTCAGCATGA
* * * *
91154 ATACATGTTTACACTCGTCAGTATGA
1 ATATACGTTTACGCTCGTCAGCATGA
* *
91180 ATATACATTTACGCTCATCAGCATGA
1 ATATACGTTTACGCTCGTCAGCATGA
* * *
91206 AAATACGTTTACGCTCATCGGCATGA
1 ATATACGTTTACGCTCGTCAGCATGA
* *
91232 ATATATGTTTACGCTCGTTAGCATGA
1 ATATACGTTTACGCTCGTCAGCATGA
* *
91258 TTATACGTTTACGCTCGTCAACATGA
1 ATATACGTTTACGCTCGTCAGCATGA
*
91284 AAATAC
1 ATATAC
91290 AAAGTAAAAA
Statistics
Matches: 110, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 110 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (26 bp):
ATATACGTTTACGCTCGTCAGCATGA
Found at i:91240 original size:78 final size:78
Alignment explanation
Indices: 91133--91289 Score: 215
Period size: 78 Copynumber: 2.0 Consensus size: 78
91123 TATATATATT
* * *
91133 CGTTTACGCTCGTCAGCTTGAATACATGTTTACACTCGTCAGTATGAATATACATTTACGCTCAT
1 CGTTTACGCTCATCAGCATGAATACATGTTTACACTCGTCAGCATGAATATACATTTACGCTCAT
*
91198 CAGCATGAAAATA
66 CAACATGAAAATA
* * * * * * *
91211 CGTTTACGCTCATCGGCATGAATATATGTTTACGCTCGTTAGCATGATTATACGTTTACGCTCGT
1 CGTTTACGCTCATCAGCATGAATACATGTTTACACTCGTCAGCATGAATATACATTTACGCTCAT
91276 CAACATGAAAATA
66 CAACATGAAAATA
91289 C
1 C
91290 AAAGTAAAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 68 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (78 bp):
CGTTTACGCTCATCAGCATGAATACATGTTTACACTCGTCAGCATGAATATACATTTACGCTCAT
CAACATGAAAATA
Found at i:92156 original size:169 final size:167
Alignment explanation
Indices: 91836--92172 Score: 611
Period size: 169 Copynumber: 2.0 Consensus size: 167
91826 CTCATTTAAA
91836 TAAATCAAACTAACACAAGCTTAAACATAACAAAAATCACTAAAAAAAATTCATAAAAATCTTAC
1 TAAATCAAACTAACACAAGCTTAAACATAACAAAAATCACTAAAAAAAATTCATAAAAATCTTAC
*
91901 TAAATGAAGAAAGTGATTGCTGAAACCCTTGCTCCCAATTCTTTGAACTTTTCGTGGAAGAAGAA
66 TAAATGAAGAAAGTGATTGCCGAAACCCTTGCTCCCAATTCTTTGAACTTTTCGTGGAAGAAGAA
91966 GAAAATGAGATTACCAAATTCATCAATTTTCTTCCCT
131 GAAAATGAGATTACCAAATTCATCAATTTTCTTCCCT
* * *
92003 TAAATCAAACTAAGACAAGCTTAACCATAACAAAAATCACTAAAAACAAATTCATAAAAATTTTA
1 TAAATCAAACTAACACAAGCTTAAACATAACAAAAATCACTAAAAA-AAATTCATAAAAATCTTA
*
92068 CTAAATGAAGAAAGTGATTGCCGAAACCCTTGCTCTCTAATTCTTTGAACTTTTCGTGGAAGAAG
65 CTAAATGAAGAAAGTGATTGCCGAAACCCTTGCTC-CCAATTCTTTGAACTTTTCGTGGAAGAAG
92133 AAGAAAATGAGATTACCAAATTCATCAATTTTCTTCCCT
129 AAGAAAATGAGATTACCAAATTCATCAATTTTCTTCCCT
92172 T
1 T
92173 TTTCTCTTTC
Statistics
Matches: 163, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
167 44 0.27
168 51 0.31
169 68 0.42
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.28
Consensus pattern (167 bp):
TAAATCAAACTAACACAAGCTTAAACATAACAAAAATCACTAAAAAAAATTCATAAAAATCTTAC
TAAATGAAGAAAGTGATTGCCGAAACCCTTGCTCCCAATTCTTTGAACTTTTCGTGGAAGAAGAA
GAAAATGAGATTACCAAATTCATCAATTTTCTTCCCT
Found at i:92193 original size:3 final size:3
Alignment explanation
Indices: 92185--92210 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
92175 TCTCTTTCAT
92185 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
92211 TATTATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:93356 original size:35 final size:35
Alignment explanation
Indices: 93317--93404 Score: 104
Period size: 35 Copynumber: 2.5 Consensus size: 35
93307 GAATGTGGCA
**
93317 ACCCAACCAGAAACATGAGGATGACGGATATGACG
1 ACCCAACCAGAAACACAAGGATGACGGATATGACG
* * * * *
93352 ACCCAACAAAAAACACAAGGATGATGGGTATGAGG
1 ACCCAACCAGAAACACAAGGATGACGGATATGACG
*
93387 ACCCGACCAGAAACACAA
1 ACCCAACCAGAAACACAA
93405 AAATGATAGG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.44, C:0.24, G:0.23, T:0.09
Consensus pattern (35 bp):
ACCCAACCAGAAACACAAGGATGACGGATATGACG
Found at i:93508 original size:9 final size:9
Alignment explanation
Indices: 93494--93563 Score: 72
Period size: 9 Copynumber: 7.6 Consensus size: 9
93484 TAAATGAATT
93494 TTTTTATAA
1 TTTTTATAA
93503 TTTTTA-ATA
1 TTTTTATA-A
93512 TTTTTATAA
1 TTTTTATAA
*
93521 TTTATTAGAA
1 TTT-TTATAA
93531 TTTTTAT-A
1 TTTTTATAA
93539 TTATTTATAA
1 TT-TTTATAA
*
93549 GTTTTTATGA
1 -TTTTTATAA
93559 TTTTT
1 TTTTT
93564 TTTACCAAGT
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
8 4 0.08
9 30 0.58
10 16 0.31
11 2 0.04
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (9 bp):
TTTTTATAA
Found at i:93561 original size:28 final size:27
Alignment explanation
Indices: 93494--93563 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 27
93484 TAAATGAATT
*
93494 TTTTTATAATTTTTAATATTTTTATAA
1 TTTTTATGATTTTTAATATTTTTATAA
93521 TTTATTA-GAATTTTT-ATATTATTTATAA
1 TTT-TTATG-ATTTTTAATATT-TTTATAA
93549 GTTTTTATGATTTTT
1 -TTTTTATGATTTTT
93564 TTTACCAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
27 8 0.22
28 25 0.68
29 4 0.11
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (27 bp):
TTTTTATGATTTTTAATATTTTTATAA
Found at i:93563 original size:10 final size:10
Alignment explanation
Indices: 93493--93564 Score: 62
Period size: 10 Copynumber: 7.6 Consensus size: 10
93483 TTAAATGAAT
93493 TTTTTTATAA
1 TTTTTTATAA
*
93503 TTTTTAAT-A
1 TTTTTTATAA
93512 -TTTTTATAA
1 TTTTTTATAA
* *
93521 TTTATTAGAA
1 TTTTTTATAA
93531 -TTTTTAT-A
1 TTTTTTATAA
*
93539 TTATTTATAA
1 TTTTTTATAA
* *
93549 GTTTTTATGA
1 TTTTTTATAA
93559 TTTTTT
1 TTTTTT
93565 TTACCAAGTT
Statistics
Matches: 47, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
8 7 0.15
9 13 0.28
10 27 0.57
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:93644 original size:10 final size:10
Alignment explanation
Indices: 93631--93679 Score: 55
Period size: 10 Copynumber: 5.0 Consensus size: 10
93621 TTTGTTAAAA
93631 TTTATTATTT
1 TTTATTATTT
*
93641 TTTA-TAATT
1 TTTATTATTT
*
93650 TTTATTAGTT
1 TTTATTATTT
*
93660 TTTATGATTT
1 TTTATTATTT
*
93670 TTTATCATTT
1 TTTATTATTT
93680 CTATAAATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
9 8 0.24
10 25 0.76
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.71
Consensus pattern (10 bp):
TTTATTATTT
Found at i:93655 original size:19 final size:19
Alignment explanation
Indices: 93631--93671 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
93621 TTTGTTAAAA
*
93631 TTTATTATTTTTTATAATT
1 TTTATTAGTTTTTATAATT
*
93650 TTTATTAGTTTTTATGATT
1 TTTATTAGTTTTTATAATT
93669 TTT
1 TTT
93672 TATCATTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (19 bp):
TTTATTAGTTTTTATAATT
Found at i:93773 original size:21 final size:21
Alignment explanation
Indices: 93744--93783 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
93734 TTTAATATTT
93744 TATGATTTT-TAAGAATTTTTA
1 TATGATTTTATAA-AATTTTTA
*
93765 TATGTTTTTATAAAATTTT
1 TATGATTTTATAAAATTTT
93784 AAATATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
TATGATTTTATAAAATTTTTA
Found at i:93792 original size:30 final size:30
Alignment explanation
Indices: 93750--93809 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
93740 ATTTTATGAT
* *
93750 TTTTAAGAATTTT-TATATGTTTTTATAAAA
1 TTTTAAGAATTTTAAACATG-TTTTATAAAA
93780 TTTTAA-ATATTTTAAACATGTTTTATAAAA
1 TTTTAAGA-ATTTTAAACATGTTTTATAAAA
93810 CTTATAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
29 1 0.04
30 21 0.81
31 4 0.15
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (30 bp):
TTTTAAGAATTTTAAACATGTTTTATAAAA
Found at i:101074 original size:75 final size:74
Alignment explanation
Indices: 100855--101223 Score: 209
Period size: 75 Copynumber: 5.2 Consensus size: 74
100845 ACCTAAATTA
* **
100855 ATTAA-TATAATTATTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAAT
1 ATTAATTAT-ATTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTACAAAT
*
100919 CAAATTTATAA
65 CAAA-TTATAT
* * * * * * * * **
100930 ATTAATTATATTCTTT-TCA-AAAT-AA-T--ATTAATTTTCATTTC-TTTTATATTTT-T--TG
1 ATTAATTATATTGTTTAT-ATTAATAAATTCGATAAAATAT-A-TACAATTAATATTTTGTACAA
*
100985 ATCAAAAT-TA-
63 ATCAAATTATAT
100995 ATTAA-TATAATTGTTTATATTAATAAATTCGATAAAATATATACAATTAATAGTTTTGTACAAA
1 ATTAATTAT-ATTGTTTATATTAATAAATTCGATAAAATATATACAATTAATA-TTTTGTACAAA
101059 TCAAATTATAT
64 TCAAATTATAT
** * * ** * * * *
101070 ATTAATTATATTGTTTCCGA--AA-GAA-T-GTTAATTTTTATGTC-TTTTATATTTTG-AC---
1 ATTAATTATATTGTTT-ATATTAATAAATTCGATAAAATATAT-ACAATTAATATTTTGTACAAA
*
101125 -CAAAAT-TA-
64 TCAAATTATAT
101133 ATTAA-TATAATTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTTGTACAAA
1 ATTAATTAT-ATTGTTTATATTAATAAATTCGATAAAATATATACAATTAATA-TTTTGTACAAA
101197 TCAAATTATAT
64 TCAAATTATAT
101208 ATTAATTATATTGTTT
1 ATTAATTATATTGTTT
101224 CCGAAAGAAT
Statistics
Matches: 213, Mismatches: 44, Indels: 74
0.64 0.13 0.22
Matches are distributed among these distances:
62 4 0.02
63 12 0.06
64 7 0.03
65 19 0.09
66 8 0.04
67 16 0.08
68 14 0.07
69 10 0.05
70 22 0.10
71 24 0.11
72 5 0.02
73 16 0.08
74 10 0.05
75 36 0.17
76 10 0.05
ACGTcount: A:0.42, C:0.06, G:0.05, T:0.47
Consensus pattern (74 bp):
ATTAATTATATTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTACAAATC
AAATTATAT
Found at i:101352 original size:138 final size:138
Alignment explanation
Indices: 100811--101340 Score: 839
Period size: 138 Copynumber: 3.8 Consensus size: 138
100801 ATTCTTTTTA
* *
100811 AAAGAATATTAATTTTCATGTCTTTTATATTTTGACCTAAATTAATTAATATAATTATTTATATT
1 AAAGAATATTAATTTTCATGTCTTTTATATTTTGACCAAAATTAATTAATATAATTGTTTATATT
** *
100876 AATAAATTCGATAAAATATATACAATTAATA-TTTTGTATGAATCAAATTTATAAATTAATTATA
66 AATAAATTCGATAAAATATATACAATTAATAGTTTTGTACAAATCAAA-TTATATATTAATTATA
* * *
100940 TTCTTTTCA
130 TTGTTTCCG
* * *
100949 AAATAATATTAATTTTCATTTCTTTTATATTTTTTGATCAAAATTAATTAATATAATTGTTTATA
1 AAAGAATATTAATTTTCATGTCTTTTATA--TTTTGACCAAAATTAATTAATATAATTGTTTATA
101014 TTAATAAATTCGATAAAATATATACAATTAATAGTTTTGTACAAATCAAATTATATATTAATTAT
64 TTAATAAATTCGATAAAATATATACAATTAATAGTTTTGTACAAATCAAATTATATATTAATTAT
101079 ATTGTTTCCG
129 ATTGTTTCCG
* *
101089 AAAGAATGTTAATTTTTATGTCTTTTATATTTTGACCAAAATTAATTAATATAATTGTTTATATT
1 AAAGAATATTAATTTTCATGTCTTTTATATTTTGACCAAAATTAATTAATATAATTGTTTATATT
*
101154 AATAAATTCGATAAAATATATACAATTAATATTTTTGTACAAATCAAATTATATATTAATTATAT
66 AATAAATTCGATAAAATATATACAATTAATAGTTTTGTACAAATCAAATTATATATTAATTATAT
101219 TGTTTCCG
131 TGTTTCCG
* * *
101227 AAAGAATGTTAATTTTTATGTCTTTTATATTTTGACCAAAATTAATTAATATAACTGTTTATATT
1 AAAGAATATTAATTTTCATGTCTTTTATATTTTGACCAAAATTAATTAATATAATTGTTTATATT
* **
101292 AATAAATTCGGTAAAATATATACAATTAATA-TTTTGTATGAATCAAATT
66 AATAAATTCGATAAAATATATACAATTAATAGTTTTGTACAAATCAAATT
101341 CGTACATTAA
Statistics
Matches: 368, Mismatches: 21, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
137 16 0.04
138 228 0.62
140 110 0.30
141 14 0.04
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (138 bp):
AAAGAATATTAATTTTCATGTCTTTTATATTTTGACCAAAATTAATTAATATAATTGTTTATATT
AATAAATTCGATAAAATATATACAATTAATAGTTTTGTACAAATCAAATTATATATTAATTATAT
TGTTTCCG
Found at i:101441 original size:17 final size:16
Alignment explanation
Indices: 101419--101452 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
101409 TTATCTGTCA
101419 AATTAAATTAATTCAAC
1 AATTAAATTAATT-AAC
*
101436 AATTAATTTAATTAAC
1 AATTAAATTAATTAAC
101452 A
1 A
101453 TGACAACTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (16 bp):
AATTAAATTAATTAAC
Found at i:102600 original size:96 final size:96
Alignment explanation
Indices: 102422--102607 Score: 227
Period size: 96 Copynumber: 1.9 Consensus size: 96
102412 GGGAAAAGGA
** *
102422 ATTCAATTATCTCGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGACGCAATATTTCAGAATCG
1 ATTCAATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGACACAATATTTCAGAATCG
*
102487 AAGATAAGGAAACATTGCCTCGATTAAGGGT
66 AAGATAAAGAAACATTGCCTCGATTAAGGGT
* * * *
102518 ATTCGATTATTTCGATTTGAGGAAAAATTGCACCTAGTAAGTTAAGGCACAA-ATTTTC-GAAAC
1 ATTCAATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGACACAATA-TTTCAG-AA-
*
102581 TCGAA-ATAAA-AGAATATTGCCTCGATT
63 TCGAAGATAAAGA-AACATTGCCTCGATT
102608 TTAAAGTTTT
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
95 3 0.04
96 69 0.90
97 5 0.06
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (96 bp):
ATTCAATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAGACACAATATTTCAGAATCG
AAGATAAAGAAACATTGCCTCGATTAAGGGT
Found at i:102822 original size:27 final size:27
Alignment explanation
Indices: 102790--102846 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
102780 TATTGATGAG
102790 AAAGAAGAATGATGCAATCGGAGTTGA
1 AAAGAAGAATGATGCAATCGGAGTTGA
102817 AAAGAAGAATGATGCAATCGGAGTTGA
1 AAAGAAGAATGATGCAATCGGAGTTGA
102844 AAA
1 AAA
102847 TGAGACTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.47, C:0.07, G:0.28, T:0.18
Consensus pattern (27 bp):
AAAGAAGAATGATGCAATCGGAGTTGA
Found at i:102896 original size:28 final size:28
Alignment explanation
Indices: 102854--102913 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
102844 AAATGAGACT
* *
102854 TTTTGGATACCCGGGGGCAAAATGGTAA
1 TTTTGGATACCCGGGGGCAAAAGGGCAA
* * *
102882 TTTTGGATTCTCGGGGGCGAAAGGGCAA
1 TTTTGGATACCCGGGGGCAAAAGGGCAA
102910 TTTT
1 TTTT
102914 TTGGAAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.23, C:0.13, G:0.33, T:0.30
Consensus pattern (28 bp):
TTTTGGATACCCGGGGGCAAAAGGGCAA
Found at i:102972 original size:60 final size:59
Alignment explanation
Indices: 102923--103360 Score: 323
Period size: 60 Copynumber: 7.4 Consensus size: 59
102913 TTTGGAAAAA
* * *
102923 TTCGAGGTTAAAAATGGAATTTTTAGACATTC-GGGGTAAAAGGGTAA-TTTTGGGAGT
1 TTCGAGGTCAAAAATGGAATTTTTGGACATTCGGGGGTAAAAGGGTAATTTTTGGAAGT
* * * * *
102980 TTTGAGGTCAAAAATGGAGTTTTTGGACATCCGAGGGTAAAAGGGT-ATCTCTTT-AAGAGT
1 TTCGAGGTCAAAAATGGAATTTTTGGACATTCGGGGGTAAAAGGGTAAT-T-TTTGGA-AGT
* * * *
103040 TTCGAGATAAAAAAT-GAAGTTTTTGGACATTCGGGGGCAAAATGGTAATTTTTGGAAGT
1 TTCGAGGTCAAAAATGGAA-TTTTTGGACATTCGGGGGTAAAAGGGTAATTTTTGGAAGT
** *
103099 TTTAAGGTCAAAAATGGAATTTTTGGA-AGTTCGGGGGTAAAAATGG-AATTTTTGGAAGT
1 TTCGAGGTCAAAAATGGAATTTTTGGACA-TTCGGGGGT-AAAAGGGTAATTTTTGGAAGT
* * * ** **
103158 TTCGAGGGT-AAAAATAGAATTTTTGGAAATTTTGGGGCCAAAAATAG-AATTTTTGGAAGT
1 TTCGA-GGTCAAAAATGGAATTTTTGGACA-TTCGGGG-GTAAAAGGGTAATTTTTGGAAGT
* * * *** *
103218 TTCGAGGGTAAAAAAT-GAATTTTTGGA-AGTTTTGGGGTTAAAAATCTGATTTTTGGAAGT
1 TTCGA-GGTCAAAAATGGAATTTTTGGACA--TTCGGGGGTAAAAGGGTAATTTTTGGAAGT
*
103278 TTTGAGTGT-AAAAATGGAATTTTTGGA-AGTTTC-GGGGTCAAAAATGGG--ATTTTTGGAAGT
1 TTCGAG-GTCAAAAATGGAATTTTTGGACA--TTCGGGGGT--AAAA-GGGTAATTTTTGGAAGT
*
103338 TTCGAGGTCAAAAATGTAATTTT
1 TTCGAGGTCAAAAATGGAATTTT
103361 CGGATAGTTT
Statistics
Matches: 314, Mismatches: 44, Indels: 43
0.78 0.11 0.11
Matches are distributed among these distances:
57 28 0.09
58 13 0.04
59 87 0.28
60 174 0.55
61 12 0.04
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.34
Consensus pattern (59 bp):
TTCGAGGTCAAAAATGGAATTTTTGGACATTCGGGGGTAAAAGGGTAATTTTTGGAAGT
Found at i:103120 original size:30 final size:30
Alignment explanation
Indices: 103078--103370 Score: 317
Period size: 30 Copynumber: 9.7 Consensus size: 30
103068 ATTCGGGGGC
**
103078 AAAATGGTAATTTTTGGAAGTTTTAAGGTCA
1 AAAATGG-AATTTTTGGAAGTTTTGGGGTCA
**
103109 AAAATGGAATTTTTGGAAGTTCGGGGGT-A
1 AAAATGGAATTTTTGGAAGTTTTGGGGTCA
*
103138 AAAATGGAATTTTTGGAAGTTTCGAGGGT-A
1 AAAATGGAATTTTTGGAAGTTTTG-GGGTCA
* * *
103168 AAAATAGAATTTTTGGAAATTTTGGGGCCA
1 AAAATGGAATTTTTGGAAGTTTTGGGGTCA
* * *
103198 AAAATAGAATTTTTGGAAGTTTCGAGGGTAA
1 AAAATGGAATTTTTGGAAGTTTTG-GGGTCA
*
103229 AAAAT-GAATTTTTGGAAGTTTTGGGGTTA
1 AAAATGGAATTTTTGGAAGTTTTGGGGTCA
* *
103258 AAAATCTG-ATTTTTGGAAGTTTTGAGTGT-A
1 AAAAT-GGAATTTTTGGAAGTTTTG-GGGTCA
*
103288 AAAATGGAATTTTTGGAAGTTTCGGGGTCA
1 AAAATGGAATTTTTGGAAGTTTTGGGGTCA
* * *
103318 AAAATGGGATTTTTGGAAGTTTCGAGGTCA
1 AAAATGGAATTTTTGGAAGTTTTGGGGTCA
* *
103348 AAAATGTAATTTTCGGATAGTTT
1 AAAATGGAATTTTTGGA-AGTTT
103371 AAGGACCTCA
Statistics
Matches: 228, Mismatches: 25, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
29 40 0.18
30 163 0.71
31 25 0.11
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.36
Consensus pattern (30 bp):
AAAATGGAATTTTTGGAAGTTTTGGGGTCA
Found at i:104258 original size:34 final size:32
Alignment explanation
Indices: 104217--104285 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 32
104207 TTCATATTAA
*
104217 ATAATAAATAGAT-AGTTAATGAACATATTAATAT
1 ATAATAAATA-ATAAGTAAAT--ACATATTAATAT
*
104251 ATAATAAATAATAAGTAAATATATATTAATAT
1 ATAATAAATAATAAGTAAATACATATTAATAT
104283 ATA
1 ATA
104286 TTTATATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 14 0.44
33 2 0.06
34 16 0.50
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (32 bp):
ATAATAAATAATAAGTAAATACATATTAATAT
Done.