Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012448.1 Kokia drynarioides strain JFW-HI SEQ_127452, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100133
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 38 characters in sequence are not A, C, G, or T
Found at i:62 original size:15 final size:15
Alignment explanation
Indices: 29--65 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
19 TATTATTAGT
* *
29 ATTATTATTATTGTT
1 ATTATTATTATGGTC
44 ATTATTATTATGGTC
1 ATTATTATTATGGTC
59 ATTATTA
1 ATTATTA
66 ATATTAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.30, C:0.03, G:0.08, T:0.59
Consensus pattern (15 bp):
ATTATTATTATGGTC
Found at i:65 original size:3 final size:3
Alignment explanation
Indices: 14--54 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
4 ATCTATGCTA
* * *
14 ATT AAT ATT ATT AGT ATT ATT ATT ATT GTT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
55 GGTCATTATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:71 original size:9 final size:9
Alignment explanation
Indices: 14--112 Score: 58
Period size: 9 Copynumber: 10.8 Consensus size: 9
4 ATCTATGCTA
14 ATTAATATT
1 ATTAATATT
*
23 ATTAGTATT
1 ATTAATATT
*
32 ATTATTATT
1 ATTAATATT
* *
41 GTTATTATT
1 ATTAATATT
* *
50 ATT-ATGGTC
1 ATTAAT-ATT
* *
59 ATTATTAAT
1 ATTAATATT
68 ATTAA-ATT
1 ATTAATATT
*
76 AATAATATTT
1 ATTAATA-TT
86 ATTAATATT
1 ATTAATATT
*
95 AAATTAATAAT
1 --ATTAATATT
106 ATTAATA
1 ATTAATA
113 ATGATGATAA
Statistics
Matches: 68, Mismatches: 16, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
8 7 0.10
9 44 0.65
10 9 0.13
11 8 0.12
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (9 bp):
ATTAATATT
Found at i:81 original size:14 final size:14
Alignment explanation
Indices: 59--110 Score: 58
Period size: 14 Copynumber: 4.0 Consensus size: 14
49 TATTATGGTC
*
59 ATTATTAATATTAA
1 ATTAATAATATTAA
73 ATTAATAATA-T--
1 ATTAATAATATTAA
*
84 -TTATTAATATTAA
1 ATTAATAATATTAA
97 ATTAATAATATTAA
1 ATTAATAATATTAA
111 TAATGATGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
10 8 0.26
11 1 0.03
13 1 0.03
14 21 0.68
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTAATAATATTAA
Found at i:87 original size:24 final size:24
Alignment explanation
Indices: 60--108 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
50 ATTATGGTCA
60 TTATTAATATTAAATTAATAATAT
1 TTATTAATATTAAATTAATAATAT
84 TTATTAATATTAAATTAATAATAT
1 TTATTAATATTAAATTAATAATAT
108 T
1 T
109 AATAATGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TTATTAATATTAAATTAATAATAT
Found at i:786 original size:6 final size:6
Alignment explanation
Indices: 775--840 Score: 59
Period size: 6 Copynumber: 11.5 Consensus size: 6
765 TTAAATGAAT
* * *
775 TTTAAA TTTAAA TTTATAA --TAAA TTTAAA TTTAAA -ATAAA CTTAAT
1 TTTAAA TTTAAA TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
821 TTTAAA -ATAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTT
841 GTTGGGCCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
4 2 0.04
5 10 0.21
6 34 0.71
7 2 0.04
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (6 bp):
TTTAAA
Found at i:797 original size:17 final size:17
Alignment explanation
Indices: 777--840 Score: 101
Period size: 17 Copynumber: 3.8 Consensus size: 17
767 AAATGAATTT
*
777 TAAATTTAAATTTATAA
1 TAAATTTAAATTTAAAA
794 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
* *
811 TAAACTTAATTTTAAAA
1 TAAATTTAAATTTAAAA
828 TAAATTTAAATTT
1 TAAATTTAAATTT
841 GTTGGGCCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 42 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:824 original size:23 final size:23
Alignment explanation
Indices: 772--826 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
762 TATTTAAATG
*
772 AATTTTAAATTTAAATTTATAAT
1 AATTTTAAATTTAAATATATAAT
*
795 AAATTTAAATTTAAA-ATA-AACTT
1 AATTTTAAATTTAAATATATAA--T
818 AATTTTAAA
1 AATTTTAAA
827 ATAAATTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 2 0.07
22 2 0.07
23 23 0.85
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
AATTTTAAATTTAAATATATAAT
Found at i:1658 original size:218 final size:218
Alignment explanation
Indices: 1270--1835 Score: 888
Period size: 218 Copynumber: 2.6 Consensus size: 218
1260 ATCTCATCAA
* * * *
1270 GAAGCTAACC-TTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAGGCTGGGGTTCGAAG
1 GAAGCTAACCGTTTTATTACTTCGACTTGCTTCTCAGTATCTCATCAGGAAGCTGTGGTTCGAAG
* * *
1334 ATTTGTTCTCATCGAGCGTAGGTTTGGTTTGGTCTTCTTCTCAGTATCTTATCAGGAAGACGACC
66 ATTTGTTCTCATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGACGACC
*
1399 GTGTCATTCGTTTCAATCCGCCTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCCG
131 GTGTCATTCGTTTCAATCCGCCTCCCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCCG
1464 TATCTCATC-AGAAAGATGGTCAG
196 TATCTCATCAAG-AAGATGGTCAG
* *
1487 GAAGCTAACCGTTTTATTACTTCGACTTGCTTCTCAGTATCTCATCAGAAAGTTGTGGTTCGAAG
1 GAAGCTAACCGTTTTATTACTTCGACTTGCTTCTCAGTATCTCATCAGGAAGCTGTGGTTCGAAG
* * * * * * *
1552 ATTTGCTCGCATCAAGCGTGGGTTTTATTTGTTCTTCTTCTCAGTATCTCATCAAGAAGACGATC
66 ATTTGTTCTCATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGACGACC
1617 GTGTCATTCGTTTCAATCCGCCTCCCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCCG
131 GTGTCATTCGTTTCAATCCGCCTCCCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCCG
1682 TATCTCATCAAGAAGATGGTCAG
196 TATCTCATCAAGAAGATGGTCAG
* *
1705 GAAGCTAACCGTTTTATTACTTCGACTCT-CTTCTCAGTATCTCTTTAGGAAGCTGTGGTTCGAA
1 GAAGCTAACCGTTTTATTACTTCGACT-TGCTTCTCAGTATCTCATCAGGAAGCTGTGGTTCGAA
* *
1769 GATTTGTTCTCATCGAGCGTGGGTTTGATTTGGTCTTCTTCTTAGTA-CTTCATCAGGAAGATGA
65 GATTTGTTCTCATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATC-TCATCAGGAAGACGA
1833 CCG
129 CCG
1836 CGTTGTTGTT
Statistics
Matches: 315, Mismatches: 30, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
217 11 0.03
218 301 0.96
219 3 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (218 bp):
GAAGCTAACCGTTTTATTACTTCGACTTGCTTCTCAGTATCTCATCAGGAAGCTGTGGTTCGAAG
ATTTGTTCTCATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGACGACC
GTGTCATTCGTTTCAATCCGCCTCCCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCCG
TATCTCATCAAGAAGATGGTCAG
Found at i:2695 original size:46 final size:46
Alignment explanation
Indices: 2607--2695 Score: 119
Period size: 46 Copynumber: 1.9 Consensus size: 46
2597 TTGATTCTAG
* *
2607 GACGCCCTTTGCGAGTTTTCATCCTGAACCCCTTTTATTTTTTTTA
1 GACGCCCTTTGCGAGTTTTCATCCTCAACCCCTTTTACTTTTTTTA
*
2653 GACGCCCTTTGCGGGTTTTCAT-CTCAACTCCCCTTTT-CTTTTT
1 GACGCCCTTTGCGAGTTTTCATCCTCAA--CCCCTTTTACTTTTT
2696 AGGCGAAGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
45 4 0.11
46 26 0.68
47 8 0.21
ACGTcount: A:0.12, C:0.29, G:0.13, T:0.45
Consensus pattern (46 bp):
GACGCCCTTTGCGAGTTTTCATCCTCAACCCCTTTTACTTTTTTTA
Found at i:8437 original size:30 final size:28
Alignment explanation
Indices: 8401--8859 Score: 350
Period size: 30 Copynumber: 15.7 Consensus size: 28
8391 TAAAATGATA
8401 ATTTTTGGAAGTTTCAGGGTCAAAAATGAG
1 ATTTTTGGAAGTTTCAGGGT-AAAAATG-G
*
8431 ATTTTTGGAAG-CTCGAGGGTAAAAATGG
1 ATTTTTGGAAGTTTC-AGGGTAAAAATGG
*
8459 AATTTTTGGAAGTTTCGAGGTTAAAAATGGG
1 -ATTTTTGGAAGTTTC-AGGGTAAAAAT-GG
*
8490 A-TTTTGGAAG-TTCTGGTGTAAAAATGG
1 ATTTTTGGAAGTTTCAGG-GTAAAAATGG
* *
8517 AATTTTTGGTAGTTTCGGGGTTAAAAATGAG
1 -ATTTTTGGAAGTTTCAGGG-TAAAAATG-G
8548 ATTTTTGGAAGTTT-AGGGGT-AAAATGG
1 ATTTTTGGAAGTTTCA-GGGTAAAAATGG
**
8575 AATTTTTGGAAGTTTTGGGGTTAAAAATGTG
1 -ATTTTTGGAAGTTTCAGGG-TAAAAATG-G
* *
8606 ATTTTTGAAAGTTT-GGGAGTAAAAATGG
1 ATTTTTGGAAGTTTCAGG-GTAAAAATGG
* * *
8634 AAGTTTTGGAAGTTTTAGGGGTTAAAATGGG
1 -ATTTTTGGAAGTTTCA-GGGTAAAAAT-GG
*
8665 ATTTTTGGAAGTTT-GGAGGTAAAAATGG
1 ATTTTTGGAAGTTTCAG-GGTAAAAATGG
* **
8693 AATTTTTTGAAGTTTTGGGGGTTAAAAATGGG
1 -ATTTTTGGAAG-TTTCAGGG-TAAAAAT-GG
8725 ATTTTTGGAAG-TTCGAGGGT-AAAATGG
1 ATTTTTGGAAGTTTC-AGGGTAAAAATGG
8752 AATTTTTGGAAG-TTCTAGGGTCAAAAATGGG
1 -ATTTTTGGAAGTTTC-AGGGT-AAAAAT-GG
* * *
8783 ATTTTTCGAAGTTCCAAGGTAAAAATTGGG
1 ATTTTTGGAAGTTTCAGGGTAAAAA-T-GG
*
8813 A-TTTTGGAAG-TTCGGGGGTAAAAATGG
1 ATTTTTGGAAGTTTC-AGGGTAAAAATGG
8840 AATTTTTGGATAGTTT-AGGG
1 -ATTTTTGGA-AGTTTCAGGG
8860 ACCTCCGGAG
Statistics
Matches: 359, Mismatches: 31, Indels: 79
0.77 0.07 0.17
Matches are distributed among these distances:
27 9 0.03
28 67 0.19
29 115 0.32
30 133 0.37
31 33 0.09
32 2 0.01
ACGTcount: A:0.31, C:0.03, G:0.31, T:0.36
Consensus pattern (28 bp):
ATTTTTGGAAGTTTCAGGGTAAAAATGG
Found at i:8523 original size:58 final size:59
Alignment explanation
Indices: 8387--8854 Score: 521
Period size: 59 Copynumber: 8.0 Consensus size: 59
8377 CGGATATCCG
* * * * *
8387 GGGGT-AAAATGATAATTTTTGGAAGTTTCAGGGTCAAAAATGAGATTTTTGGAAGCTC-
1 GGGGTAAAAATG-GAATTTTTGGAAGTTTCGGGGTTAAAAATGGGATTTTTGGAAGTTCT
*
8445 GAGGGTAAAAATGGAATTTTTGGAAGTTTCGAGGTTAAAAATGGGA-TTTTGGAAGTTCT
1 G-GGGTAAAAATGGAATTTTTGGAAGTTTCGGGGTTAAAAATGGGATTTTTGGAAGTTCT
* * *
8504 GGTGTAAAAATGGAATTTTTGGTAGTTTCGGGGTTAAAAATGAGATTTTTGGAAGTT-T
1 GGGGTAAAAATGGAATTTTTGGAAGTTTCGGGGTTAAAAATGGGATTTTTGGAAGTTCT
* * *
8562 AGGGGT-AAAATGGAATTTTTGGAAGTTTTGGGGTTAAAAATGTGATTTTTGAAAGTT-T
1 -GGGGTAAAAATGGAATTTTTGGAAGTTTCGGGGTTAAAAATGGGATTTTTGGAAGTTCT
* *
8620 GGGAGTAAAAATGGAAGTTTTGGAAGTTTTAGGGGTT-AAAATGGGATTTTTGGAAGTT-T
1 GGG-GTAAAAATGGAATTTTTGGAAG-TTTCGGGGTTAAAAATGGGATTTTTGGAAGTTCT
* *
8679 GGAGGTAAAAATGGAATTTTTTGAAGTTTTGGGGGTTAAAAATGGGATTTTTGGAAGTTC-
1 GG-GGTAAAAATGGAATTTTTGGAAG-TTTCGGGGTTAAAAATGGGATTTTTGGAAGTTCT
* * * *
8739 GAGGGT-AAAATGGAATTTTTGGAAG-TTCTAGGGTCAAAAATGGGATTTTTCGAAGTTCC
1 G-GGGTAAAAATGGAATTTTTGGAAGTTTC-GGGGTTAAAAATGGGATTTTTGGAAGTTCT
** * * *
8798 AAGGTAAAAATTGGGA-TTTTGGAAG-TTCGGGGGTAAAAATGGAATTTTTGGATAGTT
1 GGGGTAAAAA-TGGAATTTTTGGAAGTTTCGGGGTTAAAAATGGGATTTTTGGA-AGTT
8855 TAGGGACCTC
Statistics
Matches: 358, Mismatches: 35, Indels: 33
0.84 0.08 0.08
Matches are distributed among these distances:
57 5 0.01
58 151 0.42
59 156 0.44
60 45 0.13
61 1 0.00
ACGTcount: A:0.31, C:0.03, G:0.30, T:0.35
Consensus pattern (59 bp):
GGGGTAAAAATGGAATTTTTGGAAGTTTCGGGGTTAAAAATGGGATTTTTGGAAGTTCT
Found at i:9913 original size:15 final size:15
Alignment explanation
Indices: 9880--9916 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
9870 TATTATTAGT
* *
9880 ATTATTATTATTGTT
1 ATTATTATTATGGTC
9895 ATTATTATTATGGTC
1 ATTATTATTATGGTC
9910 ATTATTA
1 ATTATTA
9917 ATATTAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.30, C:0.03, G:0.08, T:0.59
Consensus pattern (15 bp):
ATTATTATTATGGTC
Found at i:9916 original size:3 final size:3
Alignment explanation
Indices: 9865--9905 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
9855 ATCTATGCTA
* * *
9865 ATT AAT ATT ATT AGT ATT ATT ATT ATT GTT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
9906 GGTCATTATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:9922 original size:9 final size:9
Alignment explanation
Indices: 9865--9963 Score: 58
Period size: 9 Copynumber: 10.8 Consensus size: 9
9855 ATCTATGCTA
9865 ATTAATATT
1 ATTAATATT
*
9874 ATTAGTATT
1 ATTAATATT
*
9883 ATTATTATT
1 ATTAATATT
* *
9892 GTTATTATT
1 ATTAATATT
* *
9901 ATT-ATGGTC
1 ATTAAT-ATT
* *
9910 ATTATTAAT
1 ATTAATATT
9919 ATTAA-ATT
1 ATTAATATT
*
9927 AATAATATTT
1 ATTAATA-TT
9937 ATTAATATT
1 ATTAATATT
*
9946 AAATTAATAAT
1 --ATTAATATT
9957 ATTAATA
1 ATTAATA
9964 ATGATGATAA
Statistics
Matches: 68, Mismatches: 16, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
8 7 0.10
9 44 0.65
10 9 0.13
11 8 0.12
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (9 bp):
ATTAATATT
Found at i:9932 original size:14 final size:14
Alignment explanation
Indices: 9910--9961 Score: 58
Period size: 14 Copynumber: 4.0 Consensus size: 14
9900 TATTATGGTC
*
9910 ATTATTAATATTAA
1 ATTAATAATATTAA
9924 ATTAATAATA-T--
1 ATTAATAATATTAA
*
9935 -TTATTAATATTAA
1 ATTAATAATATTAA
9948 ATTAATAATATTAA
1 ATTAATAATATTAA
9962 TAATGATGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
10 8 0.26
11 1 0.03
13 1 0.03
14 21 0.68
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTAATAATATTAA
Found at i:9938 original size:24 final size:24
Alignment explanation
Indices: 9911--9959 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
9901 ATTATGGTCA
9911 TTATTAATATTAAATTAATAATAT
1 TTATTAATATTAAATTAATAATAT
9935 TTATTAATATTAAATTAATAATAT
1 TTATTAATATTAAATTAATAATAT
9959 T
1 T
9960 AATAATGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TTATTAATATTAAATTAATAATAT
Found at i:10634 original size:17 final size:16
Alignment explanation
Indices: 10614--10701 Score: 68
Period size: 17 Copynumber: 5.2 Consensus size: 16
10604 ATTGGACATT
10614 ATTTAAATGAATTTTAA
1 ATTTAAAT-AATTTTAA
* **
10631 ATTTAAATTTATAATAA
1 ATTTAAA-TAATTTTAA
*
10648 ATTTAAATAAATTTAA
1 ATTTAAATAATTTTAA
**
10664 ATTTAAAATAAACTTAA
1 ATTT-AAATAATTTTAA
* *
10681 TTTTAACATAAATTTAA
1 ATTTAA-ATAATTTTAA
10698 ATTT
1 ATTT
10702 GTTGGGCCCA
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
16 11 0.19
17 45 0.79
18 1 0.02
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.45
Consensus pattern (16 bp):
ATTTAAATAATTTTAA
Found at i:10637 original size:6 final size:6
Alignment explanation
Indices: 10626--10701 Score: 58
Period size: 6 Copynumber: 13.5 Consensus size: 6
10616 TTAAATGAAT
10626 TTTAAA TTTAAA TTTATAA --TAAA TTTAAA --TAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * *
10671 -ATAAA CTTAAT TTTAACA --TAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTT
10702 GTTGGGCCCA
Statistics
Matches: 56, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
4 7 0.12
5 9 0.16
6 38 0.68
7 2 0.04
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (6 bp):
TTTAAA
Found at i:10648 original size:11 final size:10
Alignment explanation
Indices: 10614--10665 Score: 59
Period size: 11 Copynumber: 4.8 Consensus size: 10
10604 ATTGGACATT
10614 ATTTAAATGAA
1 ATTTAAAT-AA
*
10625 TTTTAAATTTAA
1 ATTTAAA--TAA
10637 ATTTATAATAA
1 ATTTA-AATAA
10648 ATTTAAATAA
1 ATTTAAATAA
10658 ATTTAAAT
1 ATTTAAAT
10666 TTAAAATAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
10 13 0.36
11 14 0.39
12 6 0.17
13 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (10 bp):
ATTTAAATAA
Found at i:10658 original size:27 final size:27
Alignment explanation
Indices: 10628--10680 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
10618 AAATGAATTT
* *
10628 TAAATTTAAATTTATAATAAATTTAAA
1 TAAATTTAAATTTAAAATAAACTTAAA
10655 TAAATTTAAATTTAAAATAAACTTAA
1 TAAATTTAAATTTAAAATAAACTTAA
10681 TTTTAACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (27 bp):
TAAATTTAAATTTAAAATAAACTTAAA
Found at i:12961 original size:2 final size:2
Alignment explanation
Indices: 12954--13001 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
12944 ATGTATTATC
12954 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12996 AT AT AT
1 AT AT AT
13002 GTGTGTGTTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13531 original size:2 final size:2
Alignment explanation
Indices: 13524--13571 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
13514 CAAGTTCTGC
13524 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13566 AT AT AT
1 AT AT AT
13572 TAATTTAATG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:19705 original size:14 final size:14
Alignment explanation
Indices: 19688--19730 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
19678 CATAAAAATT
19688 AAAAAATAATAAAA
1 AAAAAATAATAAAA
* **
19702 AAAATATTTTAAAA
1 AAAAAATAATAAAA
*
19716 AAAAATTAATAAAA
1 AAAAAATAATAAAA
19730 A
1 A
19731 CTTTTAGAAA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAAAATAATAAAA
Found at i:22514 original size:27 final size:26
Alignment explanation
Indices: 22484--22572 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 26
22474 GACAAGATGA
22484 TAAACACGGAATAGTCCAATGGGACAT
1 TAAACACGG-ATAGTCCAATGGGACAT
* * *
22511 TAAACATGGGATAGTCCAATGAGATAT
1 TAAACA-CGGATAGTCCAATGGGACAT
* * * *
22538 TAGACACAGGATATTCTAATGGGACGT
1 TAAACAC-GGATAGTCCAATGGGACAT
22565 TAAACACG
1 TAAACACG
22573 AGGTAGTCTG
Statistics
Matches: 49, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
26 1 0.02
27 46 0.94
28 2 0.04
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.22
Consensus pattern (26 bp):
TAAACACGGATAGTCCAATGGGACAT
Found at i:30344 original size:74 final size:74
Alignment explanation
Indices: 30218--30367 Score: 282
Period size: 74 Copynumber: 2.0 Consensus size: 74
30208 TATATAAATA
*
30218 ACAGTTTAAGATAACATTAAAGGTCCAGTGATTAGTGGTTTGCAGTTAAAACTCTGCAACCTCCA
1 ACAGGTTAAGATAACATTAAAGGTCCAGTGATTAGTGGTTTGCAGTTAAAACTCTGCAACCTCCA
30283 CAATGATGG
66 CAATGATGG
*
30292 ACAGGTTAAGATAACATTAAAGGTCCAGTGATTAGTGGTTTGCAGTTAAAACTCTGCAATCTCCA
1 ACAGGTTAAGATAACATTAAAGGTCCAGTGATTAGTGGTTTGCAGTTAAAACTCTGCAACCTCCA
30357 CAATGATGG
66 CAATGATGG
30366 AC
1 AC
30368 TGCTATATAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (74 bp):
ACAGGTTAAGATAACATTAAAGGTCCAGTGATTAGTGGTTTGCAGTTAAAACTCTGCAACCTCCA
CAATGATGG
Found at i:31468 original size:27 final size:27
Alignment explanation
Indices: 31409--31469 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
31399 GACGCTCAGT
* *
31409 AGTTGCTAGGTGAGACTCTTAGGAGAA
1 AGTTGTTAGGTGAGACTCTTAGAAGAA
* *
31436 ATTTGTTAGGT-AGGACTCTTAGAATAA
1 AGTTGTTAGGTGA-GACTCTTAGAAGAA
31463 AGTTGTT
1 AGTTGTT
31470 TTAGGACTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.30, C:0.08, G:0.28, T:0.34
Consensus pattern (27 bp):
AGTTGTTAGGTGAGACTCTTAGAAGAA
Found at i:32333 original size:37 final size:37
Alignment explanation
Indices: 32282--32362 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
32272 TCAAAACAGA
*
32282 ATAGTTGTTTTTGTTGCGGAATAAGTCAATGGCTGTT
1 ATAGTTGTTGTTGTTGCGGAATAAGTCAATGGCTGTT
* * *
32319 ATAGTTGTTGTTGTTGTGGACTAAGTCAGTGGCTGTT
1 ATAGTTGTTGTTGTTGCGGAATAAGTCAATGGCTGTT
32356 ATTAGTT
1 A-TAGTT
32363 TGATTCAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
37 34 0.87
38 5 0.13
ACGTcount: A:0.20, C:0.07, G:0.28, T:0.44
Consensus pattern (37 bp):
ATAGTTGTTGTTGTTGCGGAATAAGTCAATGGCTGTT
Found at i:38577 original size:18 final size:19
Alignment explanation
Indices: 38550--38585 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
38540 TGACACACTA
*
38550 AAATATATACA-AAATATG
1 AAATAAATACACAAATATG
38568 AAATAAATACACAAATAT
1 AAATAAATACACAAATAT
38586 ATATATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.64, C:0.08, G:0.03, T:0.25
Consensus pattern (19 bp):
AAATAAATACACAAATATG
Found at i:39299 original size:17 final size:18
Alignment explanation
Indices: 39258--39310 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
39248 ATAAGTATAC
*
39258 AAAATTACCCGAATTAAT
1 AAAATTACCCGAATTAAA
*
39276 GAAATTACCCGAA-TAAA
1 AAAATTACCCGAATTAAA
* *
39293 AAAATTAACCTAATTAAA
1 AAAATTACCCGAATTAAA
39311 GTATTGAATC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
17 13 0.45
18 16 0.55
ACGTcount: A:0.55, C:0.15, G:0.06, T:0.25
Consensus pattern (18 bp):
AAAATTACCCGAATTAAA
Found at i:45663 original size:26 final size:28
Alignment explanation
Indices: 45634--45686 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
45624 TATAATAGGT
*
45634 TTAAAAAAATT-CAA-TTTAATTAATTG
1 TTAAAAAAATTAAAATTTTAATTAATTG
*
45660 TTAAAAAATTTAAAATTTTAATTAATT
1 TTAAAAAAATTAAAATTTTAATTAATT
45687 CAATTAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 10 0.43
27 2 0.09
28 11 0.48
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (28 bp):
TTAAAAAAATTAAAATTTTAATTAATTG
Found at i:57435 original size:17 final size:18
Alignment explanation
Indices: 57397--57436 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
57387 ATTGTTTTTC
*
57397 AAAAGTACTTTTGAAATA
1 AAAAATACTTTTGAAATA
57415 AAAAATACTTTT-AAGATA
1 AAAAATACTTTTGAA-ATA
57433 AAAA
1 AAAA
57437 CATTACTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.30
Consensus pattern (18 bp):
AAAAATACTTTTGAAATA
Found at i:57641 original size:23 final size:23
Alignment explanation
Indices: 57611--57664 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
57601 TGATTATTTT
57611 ATTCTATTGGTCCCTCATGTTTC
1 ATTCTATTGGTCCCTCATGTTTC
57634 ATTCTATTGGTCCCTCATGTTTC
1 ATTCTATTGGTCCCTCATGTTTC
57657 ATTCTATT
1 ATTCTATT
57665 AAAAATCCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.15, C:0.24, G:0.11, T:0.50
Consensus pattern (23 bp):
ATTCTATTGGTCCCTCATGTTTC
Found at i:68512 original size:23 final size:21
Alignment explanation
Indices: 68465--68521 Score: 53
Period size: 20 Copynumber: 2.7 Consensus size: 21
68455 AAGATATATT
*
68465 GAAAATTAATAAAATATTTTA
1 GAAAATAAATAAAATATTTTA
*
68486 -AAAATAAATAATATAATTTATA
1 GAAAATAAATAAAAT-ATTT-TA
* *
68508 GAAAAAAAAAAAAA
1 GAAAATAAATAAAA
68522 AATCATTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
20 12 0.43
21 4 0.14
22 2 0.07
23 10 0.36
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (21 bp):
GAAAATAAATAAAATATTTTA
Found at i:70132 original size:12 final size:11
Alignment explanation
Indices: 70099--70130 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
70089 TAGTTCACAA
70099 AATTATTTTTC
1 AATTATTTTTC
*
70110 CATTATTTTTC
1 AATTATTTTTC
70121 AATTATTTTT
1 AATTATTTTT
70131 TCCTCAATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (11 bp):
AATTATTTTTC
Found at i:72920 original size:56 final size:57
Alignment explanation
Indices: 72793--72948 Score: 185
Period size: 56 Copynumber: 2.7 Consensus size: 57
72783 TATATTATGA
* * * *
72793 TTTTTATT-AATTCATATTTTAATAATAATTATATTAAGAATGTTATTAAATTATATAT
1 TTTTTATTAAATT-ATA-TTTAATAATAATCATATTAAGAATATGATTAAAATATATAT
* *
72851 TATTTTATTAAATTGTATTTAATAATAATCA-AGTTAA-AATATGATTAAAATATTTAT
1 T-TTTTATTAAATTATATTTAATAATAATCATA-TTAAGAATATGATTAAAATATATAT
*
72908 TTTTTATTAAATTATATTTAATAATAATCTTATTAA-AATAT
1 TTTTTATTAAATTATATTTAATAATAATCATATTAAGAATAT
72949 AACAACAATA
Statistics
Matches: 86, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
56 36 0.42
57 19 0.22
58 18 0.21
59 9 0.10
60 4 0.05
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (57 bp):
TTTTTATTAAATTATATTTAATAATAATCATATTAAGAATATGATTAAAATATATAT
Found at i:73134 original size:16 final size:16
Alignment explanation
Indices: 73113--73150 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
73103 TGAAATACTG
73113 ATTACAACCCTATTCC
1 ATTACAACCCTATTCC
* *
73129 ATTACAGCTCTATTCC
1 ATTACAACCCTATTCC
73145 ATTACA
1 ATTACA
73151 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.32, G:0.03, T:0.34
Consensus pattern (16 bp):
ATTACAACCCTATTCC
Found at i:73151 original size:16 final size:16
Alignment explanation
Indices: 73122--73152 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
73112 GATTACAACC
73122 CTATTCCATTACAGCT
1 CTATTCCATTACAGCT
73138 CTATTCCATTACAGC
1 CTATTCCATTACAGC
73153 GAACCAAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.32, G:0.06, T:0.35
Consensus pattern (16 bp):
CTATTCCATTACAGCT
Found at i:83473 original size:87 final size:87
Alignment explanation
Indices: 83327--83497 Score: 324
Period size: 87 Copynumber: 2.0 Consensus size: 87
83317 CACTGTTCTT
*
83327 ATACCATTTTGGTAAAATAAAATACGGGTTTAGGTATATGAAATTTAAGTCATCAATAAAATATT
1 ATACCATTTTGGAAAAATAAAATACGGGTTTAGGTATATGAAATTTAAGTCATCAATAAAATATT
83392 GAACCCCCTCCACCCCAAAAAC
66 GAACCCCCTCCACCCCAAAAAC
83414 ATACCATTTTGGAAAAATAAAATACGGGTTTAGGTATATGAAATTTAAGTCATCAATAAAATATT
1 ATACCATTTTGGAAAAATAAAATACGGGTTTAGGTATATGAAATTTAAGTCATCAATAAAATATT
*
83479 GAATCCCCTCCACCCCAAA
66 GAACCCCCTCCACCCCAAA
83498 TTTAGGTATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 82 1.00
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.28
Consensus pattern (87 bp):
ATACCATTTTGGAAAAATAAAATACGGGTTTAGGTATATGAAATTTAAGTCATCAATAAAATATT
GAACCCCCTCCACCCCAAAAAC
Found at i:83528 original size:56 final size:56
Alignment explanation
Indices: 83442--83553 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
83432 AAAATACGGG
*
83442 TTTAGGTATATGAAATTTAAGTCATCAATAAAATATTGAATCCCCTCCACCCCAAA
1 TTTAGGTATATGAAATTTAAGTCATCAATAAAATATTGAACCCCCTCCACCCCAAA
*
83498 TTTAGGTATGTGAAATTTAAGTCATCAATAAAATATTGAACCCCCTCCACCCCAAA
1 TTTAGGTATATGAAATTTAAGTCATCAATAAAATATTGAACCCCCTCCACCCCAAA
83554 AACATACCAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.29
Consensus pattern (56 bp):
TTTAGGTATATGAAATTTAAGTCATCAATAAAATATTGAACCCCCTCCACCCCAAA
Found at i:84911 original size:29 final size:29
Alignment explanation
Indices: 84857--84929 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
84847 AAATTTCAAT
84857 AAATAAAAAAT-ATATAAAATTATT-AAA
1 AAATAAAAAATAATATAAAATTATTAAAA
* *
84884 TATTAAAAACATAATATAAATATT-TTAAAA
1 AAATAAAAA-ATAATATAAA-ATTATTAAAA
84914 AAATAAAAAATAATAT
1 AAATAAAAAATAATAT
84930 GAACACATCT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
27 7 0.18
28 2 0.05
29 16 0.42
30 13 0.34
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (29 bp):
AAATAAAAAATAATATAAAATTATTAAAA
Found at i:85520 original size:221 final size:221
Alignment explanation
Indices: 85125--88013 Score: 3300
Period size: 221 Copynumber: 12.7 Consensus size: 221
85115 AAAAACACTA
* ** *
85125 CATTGAAGAAGAGAAAGGATTGTATGAAACAGATATATTATCCCTTTCCAATAGTTTTATGTCAC
1 CATTGAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
* *
85190 ACCAACAATTTCATCCTTAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGACGAAAATGT
66 ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
* ** * *
85255 TGAAATTAAGAATGAAAATACTGATGTGGCATAAATTTATTGGAAAAGGGACAAAAATGACGTGG
131 TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAAGGACACAAATGACGTGG
*
85320 TGTCACTGTTTCATTCAATCATTTTC
196 TGTCACTGTTTCATTCAATCCTTTTC
* *
85346 CATTAAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCATTAGTTTTATGCCAC
1 CATTGAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
85411 ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAAAT-
66 ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATG-AAAATG
* * * * *
85475 TTTAAATTAAGAATGAAAATATTGATGTGGCGTAAAACAATTGGAAAAAAGACACAAATAACGTG
130 TTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAAGGACACAAATGACGTG
*
85540 GTGTCACTGTTTTATTCAATCCTTTTC
195 GTGTCACTGTTTCATTCAATCCTTTTC
* * * * *
85567 CATTGAAGAAGAGAAAGGATTGTATAAAACAGTGATATTATCCCTTTCTAATAGTTTTATGACAC
1 CATTGAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
* * * *
85632 ACCAACAATTTAATCTTGAATTTTAGGATTTTAATTTTAATTTGATTTTTTCAAGATGAAAATGT
66 ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
* * *
85697 TGAAATTAAGAATGAAAATACTAATGTGGCGTAAAACTATTGAAAAAAAGGACATAAATGACGTG
131 TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTG-GAAAAAGGACACAAATGACGTG
* *
85762 GTGCCACTGTTCCATTCAATCCTTTTC
195 GTGTCACTGTTTCATTCAATCCTTTTC
* *
85789 CATTGAATAAAAGAAAGGATTGTATGAAACTGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
1 CATTGAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
* *
85854 ACCAACAATTTCATCCTGAATATCAGGATTTTCATTTTAATTTGATTTTTTCAGGATGAAAATGT
66 ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
*
85919 TGAAATTAAGAATGAAAATACTGATATGGCGTAAAACTATTGGAAAAAGGACACAAATGACGTGG
131 TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAAGGACACAAATGACGTGG
* ***
85984 TATCACTGTTTCATTCAATCCTGGAC
196 TGTCACTGTTTCATTCAATCCTTTTC
* * ** *** * * * ** ** *
86010 ACAAATGACGTGGTATCACTGTTTTATTCAATCCTTTTCCATTGAAGA-AGAGAAAAGAT-TGTA
1 -C--AT----T-GAAT-A-AG----A-GAAAGGATTGT--A-TGAA-ACAGGGATATTATCCCTT
** * * * *** * * * * * * * * *
86073 TGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGC-CACA--TCAAAGA-TTTCATCCTGAA
47 TCCAATA--G-TTTTATGCCACACCAACAATTTCATCCTGA-ATTTC-AGGATTTTAAT-TTTAA
* * **** * * *
86134 TTTCAGGATTTTAATTTTAATTTGATTTTTTTAGGATGAAAATGTTGAAGTTAA-GAATGAA-AA
106 TTT---GA--TT--TTTTCA--GGA--TGAAAATGTTG-AAA--TT-AAG--AATGAA--AATAC
* * *
86197 T-ACTGATATG-GCGTAAAACTATTGGAAAAGGGACACAAATGACATGGTGTCACTGTTTCATTC
152 TGA-TG-T-GGCG--TAAAACTATTGGAAAAAGGACACAAATGACGTGGTGTCACTGTTTCATTC
86260 AATCCTTTTC
212 AATCCTTTTC
* * *
86270 CATTGAAGAAGAGAAAGGATTGTATGAAATAGGGATATAATCCCTTTCCAATAGTTTTATGCCAC
1 CATTGAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
* *
86335 ATCAATAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
66 ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
* * * *
86400 TGAAATTAAGAATGAAAATACTGATGTGACGTAAAACTATTGGAAAAGGGACACAAATGACATGA
131 TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAAGGACACAAATGACGTGG
*
86465 CGTCACTGTTTTATTCAATCATTTTCCATTTTATTCAATCATTTTC
196 TGTCACTG-----TT---TCA--TT-CA----A-TC---C-TTTTC
* * * * * *
86511 CAATGAAGAAGAGAAAGGACTGTATCAAAAAGGGATATTATCCCTTTCCAACAGTTTTATGCCAC
1 CATTGAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
* * *
86576 ACTAACAATCTCATCCT-AATTTCAGGATTTTAATTTTAATTTGATTTTCTCAGGATGAAAATGT
66 ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
* * * *
86640 TGAAATTAAGAATGAAAATACCGATGTAGCGTAAAACTATTGGAAAAGGGACACAAATGACATGG
131 TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAAGGACACAAATGACGTGG
86705 TGTCACTGTTTCATTCAATCCTTTTC
196 TGTCACTGTTTCATTCAATCCTTTTC
* * *
86731 CATTGAAAAAGAGAAAGGATAGTATGAAACAGGGATATTATACCTTTCCAATAGTTTTATGCCAC
1 CATTGAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
* *
86796 ACCAACAATTTCATCATGAATTTTAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
66 ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
* * * * * *
86861 TTAAATTAAGAATGAAAATACTGATGTGGCGCAAAACTACTGGAAAAGGGAAACAAATGACGTTG
131 TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAAGGACACAAATGACGTGG
**
86926 TGTCGTTGTTTCATTCAATCCTTTTC
196 TGTCACTGTTTCATTCAATCCTTTTC
* * *
86952 CATTGAAGAAGAGAAAGGATTGTATGAAACAGAGATATTATCCCTTTCCAATAGTTTTATGTCAC
1 CATTGAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
* * * *
87017 ACAAACAATTTCATCCTAAATTTCAGGATTTTAATTTTAAATTGATTTTTACAGGATGAAAATGT
66 ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
* * *
87082 TGAAGTTAAGAATGAAAATTCTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGG
131 TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAAGGACACAAATGACGTGG
* *
87147 TGTCACTGTTTAATTCAATCCTTCTC
196 TGTCACTGTTTCATTCAATCCTTTTC
* * * * *
87173 CATTAAAGAAGAGAAAGGATTGTATGACACAAGGATATTATCCCTTTCCAATAGTTTTATGTCAC
1 CATTGAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
* * * * *
87238 ATCAACAATTTCATCCTTAATTTAACGATTTTAATTCTAATTTGATTTTTTCAGGATGAAAATGT
66 ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
* * * *
87303 TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAATTAATGGAAAATGGAAACAAATGACGTGG
131 TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAAGGACACAAATGACGTGG
87368 TGTCACTGTTTCATTCAATCCTTTTC
196 TGTCACTGTTTCATTCAATCCTTTTC
* *
87394 CATTGAAGAAGAGAAAGGATTGTATGAAACTGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
1 CATTGAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
* ** * *
87459 ATCAATGATTTCATCCAGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGA
66 ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
* * *
87524 TGAAGTTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATAACGTGG
131 TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAAGGACACAAATGACGTGG
87589 TGTCACTGTTTCATTCAATCCTTTTCCATTTCATTCAATCTTTTTC
196 TGTCACTG--T--TTC-A-----TT-CA----A-TC---C-TTTTC
* * * *
87635 CATTGAAAAAAAGAAAGGATTGTATGAAATAGGGATATTATCCCTTTCCAATAATTTTATGCCAC
1 CATTGAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
* * * * *
87700 ATCAACAATTTCATACTGAATTTCAGGATTTTAATTTTAATTTGAATTTTTAAGGACGAAAATGT
66 ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
* * *
87765 GGAAATTCAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGG
131 TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAAGGACACAAATGACGTGG
*
87830 TGTCAATGTTTCATTCAATCCTTTTC
196 TGTCACTGTTTCATTCAATCCTTTTC
* *
87856 CATTGAAAAAGAGAAAGGATTGTATGAAACATGGATATTATCCCTTTCCAATAGTTTTATGCCAC
1 CATTGAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
*
87921 ACCGACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
66 ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
87986 TGAAATTAAGAATGAAAATACTGATGTG
131 TGAAATTAAGAATGAAAATACTGATGTG
88014 AATGTATGAA
Statistics
Matches: 2274, Mismatches: 291, Indels: 206
0.82 0.11 0.07
Matches are distributed among these distances:
220 81 0.04
221 1289 0.57
222 206 0.09
223 5 0.00
224 10 0.00
225 10 0.00
226 7 0.00
227 2 0.00
228 1 0.00
229 11 0.00
230 10 0.00
231 6 0.00
232 9 0.00
234 5 0.00
235 3 0.00
236 10 0.00
237 7 0.00
238 8 0.00
239 19 0.01
240 147 0.06
241 298 0.13
242 18 0.01
243 8 0.00
245 7 0.00
246 1 0.00
247 5 0.00
249 2 0.00
250 1 0.00
251 6 0.00
252 5 0.00
253 1 0.00
254 2 0.00
255 3 0.00
256 4 0.00
257 7 0.00
258 4 0.00
259 2 0.00
260 54 0.02
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.34
Consensus pattern (221 bp):
CATTGAATAAGAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
ACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAAGGACACAAATGACGTGG
TGTCACTGTTTCATTCAATCCTTTTC
Found at i:86021 original size:39 final size:39
Alignment explanation
Indices: 85967--86044 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
85957 ATTGGAAAAA
85967 GGACACAAATGACGTGGTATCACTGTTTCATTCAATCCT
1 GGACACAAATGACGTGGTATCACTGTTTCATTCAATCCT
*
86006 GGACACAAATGACGTGGTATCACTGTTTTATTCAATCCT
1 GGACACAAATGACGTGGTATCACTGTTTCATTCAATCCT
86045 TTTCCATTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (39 bp):
GGACACAAATGACGTGGTATCACTGTTTCATTCAATCCT
Found at i:86498 original size:20 final size:20
Alignment explanation
Indices: 86473--86512 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
86463 GACGTCACTG
86473 TTTTATTCAATCATTTTCCA
1 TTTTATTCAATCATTTTCCA
86493 TTTTATTCAATCATTTTCCA
1 TTTTATTCAATCATTTTCCA
86513 ATGAAGAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.20, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTTATTCAATCATTTTCCA
Found at i:87184 original size:903 final size:892
Alignment explanation
Indices: 85125--88013 Score: 3852
Period size: 903 Copynumber: 3.2 Consensus size: 892
85115 AAAAACACTA
* *
85125 CATTGAAGAAGAGAAAGGATTGTATGAAACAGATATATTATCCCTTTCCAATAGTTTTATGTCAC
1 CATTGAAGAAGAGAAAGGATTGTATGAAACAGAGATATTATCCCTTTCCAATAGTTTTATGCCAC
* * *
85190 ACCAACAATTTCATCCTTAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGACGAAAATGT
66 ACAAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
* ** *
85255 TGAAATTAAGAATGAAAATACTGATGTGGCATAAATTTATTGGAAAAGGGACAAAAATGACGTGG
131 TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGG
* *
85320 TGTCACTGTTTCATTCAATCATTTTCCATTAAATAAGAGAAAGGATTGTATGAAACAGGGATATT
196 TGTCACTGTTTCATTCAATCCTTTTCCATTAAAGAAGAGAAAGGATTGTATGAAACAGGGATATT
* *
85385 ATCCCTTTCCATTAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTA
261 ATCCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTA
* * *
85450 ATTTGATTTTTTCAGGATGAAAAAT-TTTAAATTAAGAATGAAAATATTGATGTGGCGTAAAACA
326 ATTTGATTTTTTCAGGATG-AAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACT
* *
85514 ATTGGAAAAAAGACACAAATAACGTGGTGTCACTGTTTTATTCA--A-TCC-TT-TTCCA---T-
390 ATTGGAAAAAGGACACAAATGACGTGGTGTCACTGTTTTATTCATCATTCCATTATTCCATTTTC
* * *
85570 --TGAAGAAGAGAAAGGATTGTATAAAACAGTGATATTATCCCTTTCTAATAGTTTTATGACACA
455 CATGAAGAAGAGAAAGGATTGTATAAAA-AGGGATATTATCCCTTTCCAATAGTTTTATGCCACA
* * * * *
85633 CCAACAATTTAATCTTGAATTTTAGGATTTTAATTTTAATTTGATTTTTTCAAGATGAAAATGTT
519 CTAACAATTTCATCCT-AATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTT
* * * *
85698 GAAATTAAGAATGAAAATACTAATGTGGCGTAAAACTATTGAAAAAAAGGACATAAATGACGTGG
583 GAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTG-GAAAAGGGACACAAATGACGTGG
* * *
85763 TGCCACTGTTCCATTCAATCCTTTTCCATTGAATAAAAGAAAGGATTGTATGAAACTGGGATATT
647 TGTCACTGTTTCATTCAATCCTTTTCCATTGAA-AAAAGAAAGGATTGTATGAAACAGGGATATT
* * *
85828 ATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATATCAGGATTTTCATTTTA
711 ATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCATGAATTTCAGGATTTTAATTTTA
*
85893 ATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATATGGCGTAAAACTA
776 ATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTA
*
85958 TTGGAAAAAGGACACAAATGACGTGGTATCACTGTTTCATTCAATCCTGGACACAAATGACGTGG
841 TTGGAAAAGGGACACAAATGAC---G--T---TG-------------T-G-------T--C---G
*
86023 TATCACTGTTTTATTCAATCCTTTTC
872 --T---TGTTTCATTCAATCCTTTTC
* *
86049 CATTGAAGAAGAGAAAAGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCAC
1 CATTGAAGAAGAGAAAGGATTGTATGAAACAGAGATATTATCCCTTTCCAATAGTTTTATGCCAC
* *
86114 ATCAAA-GATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTTAGGATGAAAATG
66 A-CAAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATG
* * *
86178 TTGAAGTTAAGAATGAAAATACTGATATGGCGTAAAACTATTGGAAAAGGGACACAAATGACATG
130 TTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTG
* *
86243 GTGTCACTGTTTCATTCAATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAATAGGGATAT
195 GTGTCACTGTTTCATTCAATCCTTTTCCATTAAAGAAGAGAAAGGATTGTATGAAACAGGGATAT
* *
86308 AATCCCTTTCCAATAGTTTTATGCCACATCAATAATTTCATCCTGAATTTCAGGATTTTAATTTT
260 TATCCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATCCTGAATTTCAGGATTTTAATTTT
*
86373 AATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGACGTAAAACT
325 AATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACT
* * **
86438 ATTGGAAAAGGGACACAAATGACATGACGTCACTGTTTTATTCAATCATTTTCCATTTTATTCAA
390 ATTGGAAAAAGGACACAAATGACGTGGTGTCACTGTTTTATTC-ATCA--TTCCA--TTATTC--
* *
86503 TCATTTTCCAATGAAGAAGAGAAAGGACTGTATCAAAAAGGGATATTATCCCTTTCCAACAGTTT
448 -CATTTTCC-ATGAAGAAGAGAAAGGATTGTAT-AAAAAGGGATATTATCCCTTTCCAATAGTTT
* *
86568 TATGCCACACTAACAATCTCATCCTAATTTCAGGATTTTAATTTTAATTTGATTTTCTCAGGATG
510 TATGCCACACTAACAATTTCATCCTAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATG
* *
86633 AAAATGTTGAAATTAAGAATGAAAATACCGATGTAGCGTAAAACTATTGGAAAAGGGACACAAAT
575 AAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAAT
* *
86698 GACATGGTGTCACTGTTTCATTCAATCCTTTTCCATTGAAAAAGAGAAAGGATAGTATGAAACAG
640 GACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATTGAAAAA-AGAAAGGATTGTATGAAACAG
* *
86763 GGATATTATACCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCATGAATTTTAGGATTTT
704 GGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCATGAATTTCAGGATTTT
* *
86828 AATTTTAATTTGATTTTTTCAGGATGAAAATGTTTAAATTAAGAATGAAAATACTGATGTGGCGC
769 AATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGT
* *
86893 AAAACTACTGGAAAAGGGAAACAAATGACGTTGTGTCGTTGTTTCATTCAATCCTTTTC
834 AAAACTATTGGAAAAGGGACACAAATGACGTTGTGTCGTTGTTTCATTCAATCCTTTTC
*
86952 CATTGAAGAAGAGAAAGGATTGTATGAAACAGAGATATTATCCCTTTCCAATAGTTTTATGTCAC
1 CATTGAAGAAGAGAAAGGATTGTATGAAACAGAGATATTATCCCTTTCCAATAGTTTTATGCCAC
* * *
87017 ACAAACAATTTCATCCTAAATTTCAGGATTTTAATTTTAAATTGATTTTTACAGGATGAAAATGT
66 ACAAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
* *
87082 TGAAGTTAAGAATGAAAATTCTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGG
131 TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGG
* * * *
87147 TGTCACTGTTTAATTCAATCCTTCTCCATTAAAGAAGAGAAAGGATTGTATGACACAAGGATATT
196 TGTCACTGTTTCATTCAATCCTTTTCCATTAAAGAAGAGAAAGGATTGTATGAAACAGGGATATT
* * * * *
87212 ATCCCTTTCCAATAGTTTTATGTCACATCAACAATTTCATCCTTAATTTAACGATTTTAATTCTA
261 ATCCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTA
*
87277 ATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAATTA
326 ATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTA
* * * *
87342 ATGGAAAATGGAAACAAATGACGTGGTGTCACTGTTTCATTCA--A-TCC-TT-TTCCA---T--
391 TTGGAAAAAGGACACAAATGACGTGGTGTCACTGTTTTATTCATCATTCCATTATTCCATTTTCC
**
87397 -TGAAGAAGAGAAAGGATTGTATGAAACTGGGATATTATCCCTTTCCAATAGTTTTATGCCACA-
456 ATGAAGAAGAGAAAGGATTGTAT-AAAAAGGGATATTATCCCTTTCCAATAGTTTTATGCCACAC
** * *
87460 TCAATGATTTCATCCAGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGAT
520 T-AACAATTTCATCC-TAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTT
* *
87525 GAAGTTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATAACGTGGT
583 GAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGT
87590 GTCACTGTTTCATTCAATCCTTTTCCATTTCATTCAATCTTTTTCCATTGAAAAAAAGAAAGGAT
648 GTCACTG--T--TTC-A-----TT-CA----A-TC---C-TTTTCCATTG-AAAAAAGAAAGGAT
* * *
87655 TGTATGAAATAGGGATATTATCCCTTTCCAATAATTTTATGCCACATCAACAATTTCAT-ACTGA
692 TGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCA-TGA
* * * * *
87719 ATTTCAGGATTTTAATTTTAATTTGAATTTTTAAGGACGAAAATGTGGAAATTCAGAATGAAAAT
756 ATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAAT
* **
87784 ACTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCAATGTTTCATTCAAT
821 ACTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTTGTGTCGTTGTTTCATTCAAT
87849 CCTTTTC
886 CCTTTTC
*
87856 CATTGAAAAAGAGAAAGGATTGTATGAAACATG-GATATTATCCCTTTCCAATAGTTTTATGCCA
1 CATTGAAGAAGAGAAAGGATTGTATGAAACA-GAGATATTATCCCTTTCCAATAGTTTTATGCCA
**
87920 CACCGACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATG
65 CACAAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATG
87985 TTGAAATTAAGAATGAAAATACTGATGTG
130 TTGAAATTAAGAATGAAAATACTGATGTG
88014 AATGTATGAA
Statistics
Matches: 1770, Mismatches: 145, Indels: 120
0.87 0.07 0.06
Matches are distributed among these distances:
882 1 0.00
883 68 0.04
884 113 0.06
886 1 0.00
887 1 0.00
888 3 0.00
889 1 0.00
890 2 0.00
893 3 0.00
894 4 0.00
895 2 0.00
897 3 0.00
899 1 0.00
900 3 0.00
902 5 0.00
903 415 0.23
904 347 0.20
905 6 0.00
906 1 0.00
908 1 0.00
911 1 0.00
913 1 0.00
920 1 0.00
921 1 0.00
923 5 0.00
924 388 0.22
925 4 0.00
927 1 0.00
930 3 0.00
933 2 0.00
934 5 0.00
937 3 0.00
939 1 0.00
940 1 0.00
941 3 0.00
942 217 0.12
943 83 0.05
944 65 0.04
945 4 0.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.34
Consensus pattern (892 bp):
CATTGAAGAAGAGAAAGGATTGTATGAAACAGAGATATTATCCCTTTCCAATAGTTTTATGCCAC
ACAAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGT
TGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGG
TGTCACTGTTTCATTCAATCCTTTTCCATTAAAGAAGAGAAAGGATTGTATGAAACAGGGATATT
ATCCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTA
ATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTA
TTGGAAAAAGGACACAAATGACGTGGTGTCACTGTTTTATTCATCATTCCATTATTCCATTTTCC
ATGAAGAAGAGAAAGGATTGTATAAAAAGGGATATTATCCCTTTCCAATAGTTTTATGCCACACT
AACAATTTCATCCTAATTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAA
ATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTC
ACTGTTTCATTCAATCCTTTTCCATTGAAAAAAGAAAGGATTGTATGAAACAGGGATATTATCCC
TTTCCAATAGTTTTATGCCACACCAACAATTTCATCATGAATTTCAGGATTTTAATTTTAATTTG
ATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGTAAAACTATTGGA
AAAGGGACACAAATGACGTTGTGTCGTTGTTTCATTCAATCCTTTTC
Found at i:87622 original size:20 final size:20
Alignment explanation
Indices: 87597--87638 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
87587 GGTGTCACTG
87597 TTTCATTCAATCCTTTTCCA
1 TTTCATTCAATCCTTTTCCA
*
87617 TTTCATTCAATCTTTTTCCA
1 TTTCATTCAATCCTTTTCCA
87637 TT
1 TT
87639 GAAAAAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.19, C:0.26, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTCATTCAATCCTTTTCCA
Found at i:88128 original size:140 final size:140
Alignment explanation
Indices: 87876--88153 Score: 511
Period size: 140 Copynumber: 2.0 Consensus size: 140
87866 GAGAAAGGAT
* * *
87876 TGTATGAAACATGGATATTATCCCTTTCCAATAGTTTTATGCCACACCGACAATTTCATCCTGAA
1 TGTATGAAACAGGGATATAATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAA
87941 TTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATA
66 TTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATA
88006 CTGATGTGAA
131 CTGATGTGAA
88016 TGTATGAAACAGGGATATAATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAA
1 TGTATGAAACAGGGATATAATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAA
* *
88081 TTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAGTTAAGAATGAAAATT
66 TTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATA
88146 CTGATGTG
131 CTGATGTG
88154 GCGTAAAACT
Statistics
Matches: 133, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
140 133 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (140 bp):
TGTATGAAACAGGGATATAATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAA
TTTCAGGATTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATA
CTGATGTGAA
Found at i:88615 original size:221 final size:221
Alignment explanation
Indices: 88276--100133 Score: 14322
Period size: 221 Copynumber: 51.8 Consensus size: 221
88266 AAGGTCAAAA
* * *
88276 AGGGATATTATCCCTTTTCAATAGTTTTATGCCACACTAACAATTTCATCCTGAATTTTAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
88341 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAGGAATGAAAATACGGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
*
88406 GTAAAACTATTGGAAAAGGCACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
*
88471 GAAGAAGAGAAAGGATTGTATAAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
*
88497 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCATGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * *
88562 TTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTTAAATTAAGAATGAAAATACTAATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * * * ** *
88627 GCAAAACTACTGGAAAAGGGAAACAAATGACGTTGTGTCGTTGTTTCATTCAATCCTTTTTCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
88692 GAAGAAGAGAAAGGATTGTATGAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
*
88718 AGAGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * * *
88783 TTAATTTTAAATTGATTTTTACAGGATGAAAATGTTGAAGTTAAGAATGAAAATTCTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
*
88848 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATTCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
88913 GAAGAAGAGAAAGGATTGTATGAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
* * *
88939 AGGGATATTATCCCTTTCCAATAGTCTTATGTCACATCAACAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * *
89004 TTTATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATATGAC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * *
89069 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGCCATTGTTTCATTCAATCCTTTTCCATA
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
* * *
89134 AAAGATGAGAAAGGATTGTATAAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
* * *
89160 AGGGATATTATCCCTTTCCAACAGTTTTATGCCACATCAACAATTTCATCTTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * *
89225 TTAATTTTAATTTCATTTTTTCAAGATGAAAATGTAT-AAATTAAAAATGAAAATACTGATGTGG
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGT-TGAAATTAAGAATGAAAATACTGATGTGG
* * * *
89289 CATAAACCTATTGGAAAAGGGATACAAATGACGTGGTGTCATTGTTTTATTTAATCCTTTTCCAT
130 CGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTG--------------TTT-C--
* * *
89354 TTTATTCAATCATTTTCCATTGAAGAAGAGAAAGGATCGTATGAAAA
178 ---ATTCAATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* *
89401 AGGGATATTATCCCTTTCCTATAGTTTTATACCACACCAACAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
*
89466 TTAATTTTAATTTGATTTTTTCAGGATGTAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * *
89531 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCTTTCAATCATTTTCAATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
* * *
89596 GAAAAAGAGAAAGGATTGTGTAAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
* * *
89622 AGAGATATTATCCCTTTCCAATAGTTTTATGCCACATCAAAAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * * * *
89687 TTAATTTTAAATTGATTTTTTCAAGATGAAAATGTTGAAGTTAAGAATGAAAATACTCATCTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * * *
89752 GTAAAACTAATGGAAAAGGGACACAAATGTCGCGGTGTCACTGTTTCATTCAATCCTTTTCAATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
* *
89817 GAAGAAGAGAAAGGATTGTATAAAAT
196 GAAGAAGAGAAAGGATTGTATGAAAC
* *
89843 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATCCTGAATTTCAGGAAT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
*
89908 TTAATTTTAATTTGATTTTTTCAAGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * *
89973 GTAAAGCTATTGGAAAAGGGGCACAAATGACGTGGTGTCATTGTTTTATTCAATTCTTTTTCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTG---T-TTC-A------TTCA--
* **
90038 TTATTCAATCATTTACCATTGAAGAAGAGGCAGGATTGTATGAAAC
183 --A-TC---C-TTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* *
90084 AGGGATATTTTCCCTTTACAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * *
90149 TTAATTTTAATTTGATTTTCTCAGGATGAAAAAGTTGAAATTAAGAATGAAAATACTGATGTAGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * * * *
90214 GTAAAATTTTTGAAAAAGGGACACAAATGACGTGGTTTCACTATTTTATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCAC---TGT-TTC-A-----TT-CA--
*
90279 TTATTCAATCATTTTCCATTGAAGAAGAGTAAGGATTGTATGAAAC
183 --A-TC---C-TTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
** * * *
90325 AATGATATTATCTCTTTCCAATAGTTTTATGCCACACCAACAATTTCAACCTAAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
90390 TTAATTTTAATTTGATTTTTTCAGGATGTAAATGTTGAAATTAAGAATGAAAATATTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
90455 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCCATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTG--------------------TT
* * **
90520 TCATTCAATCCTTTTCCATTAAAGAAGAGAAAGGGTTGTATGAAGT
176 TCATTCAATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* * *
90566 AGGGATATTATCCCTTTCCGATAGTTTTATGCCACACCAACAATTTCATCCTAAATTTTAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
90631 TTAATTTTAATTTGATTTTTTCAGGATGTAAATGTTGAAATTAAGAATGAAAATACTGATGTAGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * * *
90696 GTAAAATTACTGAAAAAGGGACACAAATGACGTGGTTTCACTGTTTTATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTG---T-TTC-A-----TT-C---
*
90761 TTATTAAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
182 ------AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* * * *
90807 AAGGATA-T-TCTCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTAAATTTTAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
90870 TTAATTTTAATTTGATTTTCTCAGGATGAAAATGTTGACATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * * * *
90935 GTAACACCAATGGAAAAGGGACACAAATAACGTGGTGTCACTGTTTCATTCAATCATTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
91000 GAAGAAGAGAAAGGATTGTATGAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
* **
91026 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACAACAACAATTTCATTTTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
*
91091 TTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
*
91156 GTAAAACTAATGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
* *
91221 GAAGAAGAGAAAGGATTGTATGGACC
196 GAAGAAGAGAAAGGATTGTATGAAAC
*
91247 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGTATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * *
91312 TGAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAACGAAAATACTGATATGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* *
91377 ATAAAACTATTAGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
* *
91442 GAAAAAGAGAAAGAATTGTATGAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
* * * *
91468 AGGGATATTATCCCTTTCCAATAGTTTTATGCCATATCAATAATTTCATCCCGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
91533 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAGATACTTATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
91598 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTTATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTG---T-TTC-A-----TT-C---
* *
91663 TTATTTAATCATTTTCCATTGAAGAAGAGAAAGGATTTTATGAAAC
182 ------AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* *
91709 AGGGATATTTTCCCTTTCCTATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * **
91774 TTAATTTTAATTTGATTTTCTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGTTGTAAC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
*
91839 GTAAAACTATTGGAAAAAGGGACACAAATAACGTGGTGTCACTGTTTCATTCAATCCTTTTCCAT
131 GTAAAACTATTGG-AAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAA------TCC--
*
91904 TTCATTCAATCTTTTTCAATTGAAGAAGAGAAAGGATTGTATGAAAA
187 -T--TT---TC-----C-ATTGAAGAAGAGAAAGGATTGTATGAAAC
* * * *
91951 AGGGATATTATCCCTTTCAAATAGTTTTATGCCACATCAACAATTTCATACTAAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * * *
92016 TTAATTTTAATTTGAATATTCCAGGATGAAAATGTGGAAATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* *** * *
92081 GTAAAACTATTGTAAAAGGGACACAAATTTTGTGTTGTCAATGTTTCATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
* *
92146 GAAAAAGGGAAAGGATTGTATGAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
*
92172 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
92237 TTAATTTTAATTTGA-TTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
*
92301 GTAAAACTATTGGAAAAGGGACACAAATGACATGGTGTCACTGTTTCATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
* * *
92366 GAAAAAGGGAAAGGATTGTATAAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
* *
92392 AGGGATATTATCCCTTTCCTATAGTTTTATGCCACATCAACAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
92457 TTAATTTTAATTTGA-TTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* *
92521 GTAAAACTATTGGAAAAGGGACACAAATGACATGGTGTCACTGTTTCATTCAATCCTTTTCAATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
*
92586 GAAGAAGAGAAAGGATTGTATAAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
* *
92612 AGGGATATTATCCCTTTCCTATAGTTTTATGCCACACCAACAATTTCATCCTGAAATTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * *
92677 TTAATTTTAATATGATTTTTTCAGGATGTAAATGTTGAAATTAAGATTGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
*
92742 GTAAAACTAGTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCCATCCTTTTCTATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTG--------------------TT
* * **
92807 TCATTCAATCCTTTTCCATTAAAGAAGAGAAAGGGTTGTATGAAGT
176 TCATTCAATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* *
92853 AGGGATATTATCCCTTTCCGATTGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * *
92918 TTAATTTTAATTTGTTTTTTTTCAGGATGTAAATGTTGAAATTAAGAATGAAAATACTGATGTAG
66 TTAATTTTAATTTG-ATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGG
* * *
92983 CGTAAAATTATTGAAAAAGGGACACAAATGACGTGGTTTCACTGTTTTATTCAATCATTTTCCAT
130 CGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTG-----TT---TCA--TT-C--
*
93048 TTTATTAAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
182 -------AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* *
93095 AAGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTAAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * * *
93160 TTAATTTTAATTTGATTTTTTAAGGATGAAAATGTTTAAATTAAGATTGCAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* *
93225 GTAGAACTATTGGAAAAGGGACACATATGACGTGGTGTCACTGTTTTATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTG---T-TTC-A-----TT-CA--
* * *
93290 TTATTCAATCATTTTCCACTGAAGATGAGAAAGGATTCTATGAAAC
183 --A-TC---C-TTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* * * * * *
93336 AGGGATATTATCCATTTCCTATAGTTTTATGCCACACCAATAATTTCATCTTGATTTTCTGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * *
93401 TTAATTTTAATTTGATTTTCTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACAGATGTAGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * *
93466 GTAAAAAT-TTAGCAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCAAT
131 GTAAAACTATT-GGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCAT
*
93530 TGAAGAAGAGAAAGGATTGTATAAAAC
195 TGAAGAAGAGAAAGGATTGTATGAAAC
* * *
93557 AAGGATATTATCCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATCCTGAATTTCAAGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
93622 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
*
93687 GTAAAATTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTTATTCAATCATTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTG-----TT---TCA--TT-CA--
93752 TTATTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
183 --A-TC---C-TTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
*
93798 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
93863 TTAATTTTAATATGATTTTTTCAGGATGTAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* *
93928 GTAAAACTAGTGGAAAAGGGACACAAATGACGTGGTGTCACTATTTCATTCCATCCTTTTCTATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTG------------T-CA-------CTGTT
* * **
93993 TCATTCAATCCTTTTCCATTAAAGAAGAGAAAGGGTTGTATGAAGT
176 TCATTCAATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* * *
94039 AGGGATATTATCCCTTTCCGATTGTTTTATGCCACACAAACAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * *
94104 TTAATTTTAATTTGTTTTTTTTCAGGATGTAAATGTTGAAATTAAGAATGAAAATACTGATGTAG
66 TTAATTTTAATTTG-ATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGG
* * *
94169 CGTAAAATTATTGAAAAAGGGACACAAATGACGTGGTTTCACTGTTATATTCAATCCTTTTCCAT
130 CGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTG---T-TTC-A-----TT-C--
*
94234 TTTATTAAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
182 -------AATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* *
94281 AAGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTAAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * * * *
94346 TTAAATTTAATTTGATTTTCTCAAGATGAAAATGTTGACATTAAGAATGAAAATACTGATATGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * * * *
94411 GTAAAACTATTAGAAAAGGAACACAAATGACGTTGTGTTATTGTTTCATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
*
94476 GAAGAAGAGAAAGGATTGTATAAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
* ** *
94502 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATCC--CCTTTCCAATAG
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTT-C-A-GG
* *** * * * **
94565 TTTTATGCCACATCAACAATTTCATCCTGAATTTCAGGATTTTAATTTTAAT-TTGATTTTTTCA
63 ATTT-T---A-AT-TTTAATTTGAT--T--TTTTCAGGA--TGAA----AATGTTGA--AATT-A
* ** * *
94629 GGATGAAAATGTTAAAATTAAGAATGAAAATACTGATGTG-GCGTAAAACTAATGGAAAAGGGAC
109 --A-G--AATG--AAAA-T---ACTG-----A-TG-TG-GCG-TAAAAC-TATTGGAAAAGGGAC
* * *
94693 ACAAATGACGTGGTGTCACTGTTTCATTCAATCATTTTCCATTGAAGAGGAGAAAGGATTGTATA
153 ACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATTGAAGAAGAGAAAGGATTGTATG
94758 AAAC
218 AAAC
* * *
94762 AGGGATATTATCCTTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGTATTTCATGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * * * * *
94827 TTGATTTTGATTTGTTTTTTTTAGGATGAAACTGTTGAAATTAAGAATGAAAATACTGATATGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* *
94892 GCAAAACTATTGGAAAAGGGACACAAAGGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
* * *
94957 GAAGAAGAGAAAGGATTCTATCAAAT
196 GAAGAAGAGAAAGGATTGTATGAAAC
* * * * ** **
94983 TGGGATATTATCTCTTTCCATTAGTTTTATGGCACGTCAACAATTTCATTTTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
*
95048 TTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* *
95113 GTAAAACTAATGGAAGAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
* *
95178 GAAGAGGAGAAAGGATTGTATAAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
*
95204 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGTATTTCAGG---
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * * *
95266 ---ATTTTGATTTGTTTTTTTCAGGATGAAAATGATGAAATTAAGAATGAAAATACTGATATGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * * *
95328 ATAAAACAATTGGAAAAGGGACACAAACGACG-GTGTGCCACTGTTTCATTCAATCCTTTTCCAT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTG-GTGTCACTGTTTCATTCAATCCTTTTCCAT
* *
95392 TGAAGAAGAGAAAGGATTGAATAAAAC
195 TGAAGAAGAGAAAGGATTGTATGAAAC
* *
95419 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACATCAACAATTTCGTCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
95484 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTAAAATTAAGAATCAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
** * *
95549 GTAAAACTATTGGAAAAGAAACACAAATGACGTGGTGCCACTATTTCATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
* *
95614 GAAGAAGTGAAAGGATTGTATGACAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
** * *
95640 AAAGATATTATCCCTTTCCAATAGTTTTATGCCACATCAAAAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
95705 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATTAAAATATTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * *
95770 GTAAAATTATTGGAAAAGGTG-CACAAATGACGCGGTGTCCCTGTTTTATTCAATCCTTTTCCAT
131 GTAAAACTATTGGAAAAGG-GACACAAATGACGTGGTGTCACTG---T-TTC-A-----TT-CA-
*
95834 TTTATTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAGC
183 ---A-TC---C-TTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* * * **
95881 AGGGATATTATCTCTTTCCAATGGTTTTATGCCACACCAACAATTTTATCCCAAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
95946 TTAATTTTAATTTGATTTTTTTAGGATGTAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
*
96011 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTTTCACTGTTTCATTCCATCCTTTTCCATA
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTG--T--TT-CA-----TT-C--A
* * * * **
96076 TCATTCAATACTTTTCCATTAAAGAAGAGAAATGGTGGTATGAAGT
183 --A-TC----CTTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* * * *
96122 AGGGATATTATCCCTTTCCGATAGTTATATGCCACACTAACAATTTCTTCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * * *
96187 TTAATTTTAATTTGTTTTTTTTCAAGATGTAAATGTTGAAATTAAGAATGAAAATACTGATGTAG
66 TTAATTTTAATTTG-ATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGG
* * * * * *
96252 CGTAATATTATTGAAAAAGGGACACAAAAGACGTGGTTTCACTATTTTATTCAATCCTTTTCCAT
130 CGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCAC---TGT-TTC-A-----TT-CA-
96317 TTTATTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
183 ---A-TC---C-TTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* *
96364 AAGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTAAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * *
96429 TTATTTTTAATTTGATTTTTTCAGGATGAAAATGTTGTAATTAAGAATTAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* **
96494 GTAAAACTAATGGAAAAGATACACAAATGA-GTGGTGTCAC-GTTTCATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
* *
96557 GAAGAGGAGAAAGGATTGTATAAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
* ** *
96583 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATCC--CCTTTCCAATAG
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTT-C-A-GG
* *** * * ** *
96646 TTTTATGCCACATCAACAATTTCATCCTGAATTTT-AGGATTTTAATTTTAAT-TTGATTTTTTC
63 ATTT-T---A-AT-TTTAATTTGAT--T---TTTTCAGGA--TGAA----AATGTTGA--AATTA
* ** * ** * * * ***
96709 AGGATGAAAATGTTAAAAT-TAAGAATGGAAATACTGATGTGGCATAA---A-ACTAATGGAAAA
109 AGAATGAAAATACT--GATGT--G-GCGTAAA-ACT-AT-TGG-AAAAGGGACACAAAT-GACGT
* * * * ** **
96769 GG-GACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATTGA-AGAGGAGAAAGGA
164 GGTGTCAC---T---GT--T-TCA----TTCAATC---CTTTTCCATTGAAGA-AG-AGAAAGGA
*
96832 TTGTATAAAAC
211 TTGTATGAAAC
*
96843 AGGGATATTATCCTTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
96908 TTAATTTTAATTTGATTTTCTCAGGATGAAAATATTGAAATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * * * *
96973 GTAAAACTATTGGAAAAGGGACACAAATGATGTTGTCTCACTGTTTCATTAAATCATTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
97038 GAAGAAGAGAAAGGATTGTATGAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
* * * ** *
97064 AGTGATATTATCCCTTTCCAATTGTTTTATGCCACATCAACAATTTCATTTTGAATTTTAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * *
97129 TTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATTAAAATATTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * *
97194 GTAAAATTATAGGAAAAGGGGCACAAATGACGTGGTGTCACTGTTTTATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTG---T-TTC-A-----TT-CA--
*
97259 TTATTCAATCATTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAT
183 --A-TC---C-TTTTCCATTGAAGAAGAGAAAGGATTGTATGAAAC
* * * *
97305 AGGGAAATTATCCCTTTCCAATGGTTTTATGCCACACCGACAATTTCATCCTAAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
*
97370 TTAATTTTAATTTGATTTTCTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* *
97435 GTAAAACTATTGGAAAAGGGACACAAATGACGTTGTGTCACTGTTTCATTCAATCATTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
*
97500 GAAGAAGATAAAGGATTGTATGAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
*
97526 TGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
97591 TTAATTTTAATTTGATTTTCTCAGGATGAAAATATTGAAATTAAGAATGAAAATACTGATGTGGC
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * * * *
97656 GTAAAACTATTGGAAAAGGGACACAAATGATGTTGTCTCACTGTTTCATTAAATCATTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
97721 GAAGAAGAGAAAGGATTGTATGAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
* * * ** *
97747 AGTGATATTATCCCTTTCCAATTGTTTTATGCCACATCAACAATTTCATTTTGAATTTTAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
97812 TTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGT
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* *
97877 GTAAAACTAATGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATTCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
* * *
97942 GAAGAGGATAAAGGATTGTATAAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
* * *
97968 AGGGATATTATCCCTTTCCAACAGTTTTATGCCACACTAACAATTTCATCCTGTATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
*
98033 TTGATTTTAATTT-ATTTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGG
66 TTAATTTTAATTTGA-TTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGG
* *
98097 TGTAAAACTAATGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCAT
130 CGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCAT
* *
98162 TGAAGAGGAGAAAGGATTGTATAAAAC
195 TGAAGAAGAGAAAGGATTGTATGAAAC
* *
98189 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAAATTTCATCCTGTATTCCAGGAT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAAC-AATTTCATCCTGAATTTCAGGAT
* * * * * *
98254 TTTGATTTTAAGTTGTTTTTTTAAGGTTGAAAATGTTGAAATTAAGAATGAAAATACTGATATGG
65 TTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGG
* * *
98319 CGTAAAACTTTTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAGTCATTTTCCAT
130 CGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCAT
98384 TGAAGAAGAGAAAGGATTGTATGAAAC
195 TGAAGAAGAGAAAGGATTGTATGAAAC
** **
98411 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACGTCAACAATTTCATTTTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * * *
98476 TTAATATTAATTTTATTTTTTCAGGATGAAAATGTTGCAATTAAGAATGAAAATACTGATGTGGT
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
** *
98541 GTAAAACTAAAGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCATTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
*
98606 GAAGAACAGAAAGGATTGTATGAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
*
98632 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCT-ATATTTCA-AAG
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGA-ATTTCAGGA-
* * *
98695 TTTTAATTTTAATTTGATTTTCTCATGATGAAAATGTTGAAATTAAGAATGAAAATACAGATGTG
64 TTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTG
* * *
98760 GCGTAAAACTATTGGAAAAGGGACACAAATGACGTTGTGTCACTGTTTCATTCAGTCATTTTCCA
129 GCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCA
*
98825 TTGAAGAAGAGAAAGGATTGTATGAAAT
194 TTGAAGAAGAGAAAGGATTGTATGAAAC
** **
98853 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACGTCAACAATTTCATATTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
98918 TTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGT
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
*
98983 GTAAAACTAATGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
* *
99048 GAAGAGGAGAAAGGATTGTATAAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
*
99074 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAAATTTCATCCT-ATATTCCAGGA
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAAC-AATTTCATCCTGA-ATTTCAGGA
* * ** * *
99138 TTTTGATTTTAAGTTCTTTTTTTCAGGTTGAAAATGTTGAAATTAAGAATGAAAATACTGATATG
64 TTTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTG
* *
99203 GCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAGTCATTTTCCA
129 GCGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCA
**
99268 TTTTTAGAAGAGAAAGGATTGTATGAAAC
194 -TTGAAGAAGAGAAAGGATTGTATGAAAC
** * ** *
99297 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACGTCAACAATTACATTTTGAATTTCAAGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* *
99362 TTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGT
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* * * * *
99427 GTAAAAGTAATGGAAAAGGGACACAAATGACGTGGTGTCACTATTTTATTCAAACCTTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
*
99492 GAAG-AGAAGAAAGGATTGTATAAAAC
196 GAAGAAG-AGAAAGGATTGTATGAAAC
* *
99518 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAAATTTCATCCTGTATTCCAGGAT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAAC-AATTTCATCCTGAATTTCAGGAT
* * * *
99583 TTTGATTTTAAGTTGTTTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATATGG
65 TTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGG
* * * *
99648 CGTAAAACTTTTGGAAAAGAGACACAAATGACGTGGTGTCACTGTTTCATTCAGTCATTTTCCAT
130 CGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCAT
* *
99713 TGAAGAAGAGAAACGATTGAATGAAAC
195 TGAAGAAGAGAAAGGATTGTATGAAAC
* ** **
99740 AGGGATACTATCCCTTTCCAATAGTTTTATGCCACGTCAACAATTTCATTTTGAATTTCAGGATT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
* * * *
99805 TTAATTTTAATTTTATTTTTTCAGGATGAAAATGTTAAAATTAAGAACGAAAATACTGATGTGGT
66 TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
* *
99870 GTAAAACTAATGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCATTTTCCATT
131 GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
*
99935 GAAGAACAGAAAGGATTGTATGAAAC
196 GAAGAAGAGAAAGGATTGTATGAAAC
*
99961 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCT-ATATTTCAAGAT
1 AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGA-ATTTCAGGAT
* * * *
100025 TTTAATTTTAATTTGATGTTCTCATGATGAAAATTTTGAAATTAAGAATGAAAATACTGATGTGG
65 TTTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGG
*
100090 CGTAAAACTATTGGAAAAGGGACACAAATGACGTTGTGTCACTG
130 CGTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTG
Statistics
Matches: 10194, Mismatches: 1015, Indels: 856
0.84 0.08 0.07
Matches are distributed among these distances:
214 1 0.00
215 197 0.02
217 3 0.00
218 1 0.00
219 132 0.01
220 435 0.04
221 4653 0.46
222 692 0.07
223 73 0.01
224 8 0.00
225 27 0.00
226 21 0.00
227 13 0.00
228 13 0.00
229 12 0.00
230 20 0.00
231 22 0.00
232 30 0.00
233 5 0.00
234 12 0.00
235 19 0.00
236 22 0.00
237 45 0.00
238 25 0.00
239 160 0.02
240 32 0.00
241 2366 0.23
242 805 0.08
243 11 0.00
244 12 0.00
245 12 0.00
246 2 0.00
247 10 0.00
248 4 0.00
249 13 0.00
250 4 0.00
251 10 0.00
252 3 0.00
253 16 0.00
254 6 0.00
255 1 0.00
256 10 0.00
257 4 0.00
258 7 0.00
259 20 0.00
260 195 0.02
261 4 0.00
262 6 0.00
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.35
Consensus pattern (221 bp):
AGGGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATT
TTAATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGC
GTAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATT
GAAGAAGAGAAAGGATTGTATGAAAC
Found at i:89358 original size:20 final size:20
Alignment explanation
Indices: 89333--89374 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
89323 GGTGTCATTG
* *
89333 TTTTATTTAATCCTTTTCCA
1 TTTTATTCAATCATTTTCCA
89353 TTTTATTCAATCATTTTCCA
1 TTTTATTCAATCATTTTCCA
89373 TT
1 TT
89375 GAAGAAGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.21, C:0.19, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTATTCAATCATTTTCCA
Found at i:90057 original size:20 final size:20
Alignment explanation
Indices: 90016--90057 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
90006 GGTGTCATTG
**
90016 TTTTATTCAATTCTTTTTCA
1 TTTTATTCAATTCTTTACCA
90036 TTTTATTCAA-TCATTTACCA
1 TTTTATTCAATTC-TTTACCA
90056 TT
1 TT
90058 GAAGAAGAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.24, C:0.17, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTATTCAATTCTTTACCA
Found at i:90281 original size:20 final size:20
Alignment explanation
Indices: 90256--90298 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
90246 TGGTTTCACT
*
90256 ATTTTATTCAATCCTTTTCC
1 ATTTTATTCAATCATTTTCC
90276 ATTTTATTCAATCATTTTCC
1 ATTTTATTCAATCATTTTCC
90296 ATT
1 ATT
90299 GAAGAAGAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.21, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTTTATTCAATCATTTTCC
Found at i:90523 original size:20 final size:20
Alignment explanation
Indices: 90498--90539 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
90488 GGTGTCACTG
*
90498 TTTCATTCCATCCTTTTCCA
1 TTTCATTCAATCCTTTTCCA
90518 TTTCATTCAATCCTTTTCCA
1 TTTCATTCAATCCTTTTCCA
90538 TT
1 TT
90540 AAAGAAGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.17, C:0.31, G:0.00, T:0.52
Consensus pattern (20 bp):
TTTCATTCAATCCTTTTCCA
Found at i:90764 original size:20 final size:20
Alignment explanation
Indices: 90739--90780 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
90729 GGTTTCACTG
* *
90739 TTTTATTCAATCCTTTTCCA
1 TTTTATTAAATCATTTTCCA
90759 TTTTATTAAATCATTTTCCA
1 TTTTATTAAATCATTTTCCA
90779 TT
1 TT
90781 GAAGAAGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.19, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTATTAAATCATTTTCCA
Found at i:91666 original size:20 final size:20
Alignment explanation
Indices: 91641--91682 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
91631 GGTGTCACTG
*
91641 TTTTATTCAATCCTTTTCCA
1 TTTTATTCAATCATTTTCCA
*
91661 TTTTATTTAATCATTTTCCA
1 TTTTATTCAATCATTTTCCA
91681 TT
1 TT
91683 GAAGAAGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.21, C:0.19, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTATTCAATCATTTTCCA
Found at i:91908 original size:20 final size:20
Alignment explanation
Indices: 91883--91920 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
91873 GGTGTCACTG
91883 TTTCATTCAATCCTTTTCCA
1 TTTCATTCAATCCTTTTCCA
*
91903 TTTCATTCAATCTTTTTC
1 TTTCATTCAATCCTTTTC
91921 AATTGAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTCATTCAATCCTTTTCCA
Found at i:92810 original size:20 final size:20
Alignment explanation
Indices: 92785--92822 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
92775 GGTGTCACTG
*
92785 TTTCATTCCATCCTTTTCTA
1 TTTCATTCAATCCTTTTCTA
92805 TTTCATTCAATCCTTTTC
1 TTTCATTCAATCCTTTTC
92823 CATTAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.29, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTCATTCAATCCTTTTCTA
Found at i:93052 original size:20 final size:20
Alignment explanation
Indices: 93027--93068 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
93017 GGTTTCACTG
*
93027 TTTTATTCAATCATTTTCCA
1 TTTTATTAAATCATTTTCCA
93047 TTTTATTAAATCATTTTCCA
1 TTTTATTAAATCATTTTCCA
93067 TT
1 TT
93069 GAAGAAGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.26, C:0.17, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTATTAAATCATTTTCCA
Found at i:93293 original size:20 final size:20
Alignment explanation
Indices: 93268--93307 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
93258 GGTGTCACTG
*
93268 TTTTATTCAATCCTTTTCCA
1 TTTTATTCAATCATTTTCCA
93288 TTTTATTCAATCATTTTCCA
1 TTTTATTCAATCATTTTCCA
93308 CTGAAGATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTTATTCAATCATTTTCCA
Found at i:93755 original size:20 final size:20
Alignment explanation
Indices: 93730--93771 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
93720 GGTGTCACTG
93730 TTTTATTCAATCATTTTCCA
1 TTTTATTCAATCATTTTCCA
93750 TTTTATTCAATCATTTTCCA
1 TTTTATTCAATCATTTTCCA
93770 TT
1 TT
93772 GAAGAAGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.19, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTATTCAATCATTTTCCA
Found at i:93993 original size:20 final size:20
Alignment explanation
Indices: 93968--94008 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
93958 CGTGGTGTCA
*
93968 CTATTTCATTCCATCCTTTT
1 CTATTTCATTCAATCCTTTT
93988 CTATTTCATTCAATCCTTTT
1 CTATTTCATTCAATCCTTTT
94008 C
1 C
94009 CATTAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.29, G:0.00, T:0.54
Consensus pattern (20 bp):
CTATTTCATTCAATCCTTTT
Found at i:94244 original size:20 final size:20
Alignment explanation
Indices: 94216--94254 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
94206 TTCACTGTTA
* *
94216 TATTCAATCCTTTTCCATTT
1 TATTAAATCATTTTCCATTT
94236 TATTAAATCATTTTCCATT
1 TATTAAATCATTTTCCATT
94255 GAAGAAGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.21, G:0.00, T:0.54
Consensus pattern (20 bp):
TATTAAATCATTTTCCATTT
Found at i:94564 original size:39 final size:39
Alignment explanation
Indices: 94513--94591 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
94503 GGGATATTAT
94513 CCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATC
1 CCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATC
94552 CCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATC
1 CCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATC
94591 C
1 C
94592 TGAATTTCAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.28, C:0.32, G:0.05, T:0.35
Consensus pattern (39 bp):
CCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATC
Found at i:95838 original size:20 final size:20
Alignment explanation
Indices: 95813--95854 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
95803 GGTGTCCCTG
*
95813 TTTTATTCAATCCTTTTCCA
1 TTTTATTCAATCATTTTCCA
95833 TTTTATTCAATCATTTTCCA
1 TTTTATTCAATCATTTTCCA
95853 TT
1 TT
95855 GAAGAAGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTATTCAATCATTTTCCA
Found at i:96081 original size:20 final size:20
Alignment explanation
Indices: 96056--96094 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
96046 TTTCACTGTT
* *
96056 TCATTCCATCCTTTTCCATA
1 TCATTCAATACTTTTCCATA
96076 TCATTCAATACTTTTCCAT
1 TCATTCAATACTTTTCCAT
96095 TAAAGAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (20 bp):
TCATTCAATACTTTTCCATA
Found at i:96320 original size:20 final size:20
Alignment explanation
Indices: 96295--96337 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
96285 TGGTTTCACT
*
96295 ATTTTATTCAATCCTTTTCC
1 ATTTTATTCAATCATTTTCC
96315 ATTTTATTCAATCATTTTCC
1 ATTTTATTCAATCATTTTCC
96335 ATT
1 ATT
96338 GAAGAAGAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.21, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTTTATTCAATCATTTTCC
Found at i:96645 original size:39 final size:39
Alignment explanation
Indices: 96594--96672 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
96584 GGGATATTAT
96594 CCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATC
1 CCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATC
96633 CCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATC
1 CCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATC
96672 C
1 C
96673 TGAATTTTAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.28, C:0.32, G:0.05, T:0.35
Consensus pattern (39 bp):
CCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATC
Found at i:97262 original size:20 final size:20
Alignment explanation
Indices: 97237--97278 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
97227 GGTGTCACTG
*
97237 TTTTATTCAATCCTTTTCCA
1 TTTTATTCAATCATTTTCCA
97257 TTTTATTCAATCATTTTCCA
1 TTTTATTCAATCATTTTCCA
97277 TT
1 TT
97279 GAAGAAGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTATTCAATCATTTTCCA
Done.