Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012451.1 Kokia drynarioides strain JFW-HI SEQ_127455, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2084
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.39


Found at i:1083 original size:87 final size:87

Alignment explanation


    Indices: 931--1107  Score: 216
    Period size: 86  Copynumber: 2.0  Consensus size: 87

        921 ATATTTGAAC

                   *  *       *   *                            *             
        931 TTTTTTTTACTCAATTTGGTACTTAAACTTGACATTTTTTTTAATTTAGTATCTAAAGTTCTTTT
          1 TTTTTTTGACCCAATTTGATACCTAAACTTGACATTTTTTTTAATTTAGTACCTAAAGTTCTTTT

                                   
        996 T-GACCCAATTTGAT-TCTTAAA
         66 TAGACCCAATTTGATGTC-TAAA

                                    *       *                             *  
       1017 TTTTTTTGACCCAATTTGATACCTGAACTTGATATTTTTTTCTAATTTAGTACCT-AAGTTATTT
          1 TTTTTTTGACCCAATTTGATACCTAAACTTGACATTTTTTT-TAATTTAGTACCTAAAGTT-CTT

                  **                
       1081 TTTAGATTCAATTTGATGTCTAAA
         64 TTTAGACCCAATTTGATGTCTAAA

               
       1105 TTT
          1 TTT

       1108 ATTAAATATT


Statistics
Matches: 77,  Mismatches: 10, Indels: 6
        0.83            0.11        0.06

Matches are distributed among these distances:
  86   40  0.52
  87   17  0.22
  88   18  0.23
  89    2  0.03

ACGTcount: A:0.27, C:0.12, G:0.09, T:0.52


Consensus pattern (87 bp):   
TTTTTTTGACCCAATTTGATACCTAAACTTGACATTTTTTTTAATTTAGTACCTAAAGTTCTTTT
TAGACCCAATTTGATGTCTAAA
Done.