genome.fa.s12452.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012452.1 Kokia drynarioides strain JFW-HI SEQ_127456, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68281

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536--592	29	2.0	29	89	6	89	45	15	17	21	1.85
2846--2878	12	2.8	12	90	4	50	18	9	18	54	1.69
2920--2963	15	2.9	15	89	3	61	25	0	4	70	1.06
2969--3014	24	1.9	24	86	0	65	26	13	19	41	1.88
12381--12444	29	2.2	29	80	0	74	40	17	7	34	1.78
13379--13494	56	2.1	56	83	6	146	43	18	11	25	1.83
13429--13793	101	3.6	99	79	5	417	41	18	12	27	1.86
13427--13881	202	2.3	192	78	8	459	42	19	11	27	1.85
24076--24112	16	2.3	17	86	9	51	54	0	0	45	1.00
24968--25001	15	2.3	15	90	10	52	44	0	0	55	0.99
25622--25665	22	2.0	22	86	13	63	40	2	0	56	1.11
27525--27591	31	2.2	31	94	0	116	53	5	8	31	1.56
29886--29958	31	2.3	30	81	11	76	57	1	1	39	1.16
39131--39294	23	7.1	23	81	10	131	39	20	26	13	1.89
39106--39251	48	3.1	48	82	9	151	39	18	28	13	1.89
39103--39246	23	6.0	25	78	13	126	38	18	28	14	1.90
39217--39288	22	3.2	22	88	2	90	41	22	22	13	1.89
43794--43881	44	2.0	44	100	0	176	31	34	11	22	1.90
45658--45683	12	2.2	12	100	0	52	76	0	23	0	0.78
45689--45737	25	2.0	25	88	4	73	48	16	24	10	1.76
57600--57653	22	2.5	22	71	0	63	59	12	7	20	1.58
58052--58105	22	2.5	22	71	0	63	59	12	7	20	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57259--58172	452	2.0	452	98	0	1747	47	13	10	28	1.77
60199--60260	19	3.3	18	73	10	54	58	1	0	40	1.08
60224--60277	27	2.0	27	85	0	72	57	1	0	40	1.09
60719--60770	20	2.6	19	82	11	52	36	1	0	61	1.07
60718--60769	24	2.2	24	83	13	63	38	1	0	59	1.08
66347--66399	20	2.6	21	76	5	56	49	3	0	47	1.19

Tables:   1

The End!