Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012453.1 Kokia drynarioides strain JFW-HI SEQ_127457, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 136379
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 97 characters in sequence are not A, C, G, or T
Found at i:7556 original size:45 final size:45
Alignment explanation
Indices: 7491--7650 Score: 266
Period size: 45 Copynumber: 3.6 Consensus size: 45
7481 CTTCTGTTCT
* * *
7491 CACCATCCTCAGGTTTCTTCCTAGTATACACTCCTCCCTCCAACC
1 CACCATCCTCAGGCTCCTTCCTAGTATGCACTCCTCCCTCCAACC
*
7536 CACCATCCTCAGGCTCCTTCCTAGTATGCATTCCTCCCTCCAACC
1 CACCATCCTCAGGCTCCTTCCTAGTATGCACTCCTCCCTCCAACC
* *
7581 CACCATCCTCAGGTTCCTTCCTAATATGCACTCCTCCCTCCAACC
1 CACCATCCTCAGGCTCCTTCCTAGTATGCACTCCTCCCTCCAACC
7626 CACCATCCTCAGGCTCCTTCCTAGT
1 CACCATCCTCAGGCTCCTTCCTAGT
7651 CTTCAGGACA
Statistics
Matches: 106, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 106 1.00
ACGTcount: A:0.19, C:0.46, G:0.08, T:0.28
Consensus pattern (45 bp):
CACCATCCTCAGGCTCCTTCCTAGTATGCACTCCTCCCTCCAACC
Found at i:18770 original size:28 final size:28
Alignment explanation
Indices: 18730--18788 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
18720 TTAGCTCGTG
18730 AAACTAACTCAGCATGAAAGTATGAAAT
1 AAACTAACTCAGCATGAAAGTATGAAAT
18758 AAACTAACTCAGCATGAAAGTATGAAAT
1 AAACTAACTCAGCATGAAAGTATGAAAT
18786 AAA
1 AAA
18789 ATGTGCGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.20
Consensus pattern (28 bp):
AAACTAACTCAGCATGAAAGTATGAAAT
Found at i:19587 original size:3 final size:3
Alignment explanation
Indices: 19579--19627 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
19569 ATTATAAAAT
19579 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
19627 A
1 A
19628 GATTAAGATG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:28885 original size:12 final size:12
Alignment explanation
Indices: 28868--28894 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
28858 AGATAATGTG
28868 TTTATTTTTAAA
1 TTTATTTTTAAA
28880 TTTATTTTTAAA
1 TTTATTTTTAAA
28892 TTT
1 TTT
28895 TTTAAATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTATTTTTAAA
Found at i:31141 original size:42 final size:43
Alignment explanation
Indices: 31059--31142 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
31049 ATTAACATGT
* *
31059 TAAATTATATTACTTGACTCGTGTTAATATGGTTGCATGTTAC
1 TAAATTATATTACTTGACTCGTATTAATATGCTTGCATGTTAC
31102 TAAATTATATTACTTGACTC-TATTAATAT-CTTGACATGTTA
1 TAAATTATATTACTTGACTCGTATTAATATGCTTG-CATGTTA
31143 TTAATTGTGC
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
41 3 0.08
42 15 0.39
43 20 0.53
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (43 bp):
TAAATTATATTACTTGACTCGTATTAATATGCTTGCATGTTAC
Found at i:31767 original size:21 final size:21
Alignment explanation
Indices: 31741--31780 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
31731 ACGGGCCACC
*
31741 ACAATACTTTACTCCTCCCGG
1 ACAATACTCTACTCCTCCCGG
31762 ACAATACTCTACTCCTCCC
1 ACAATACTCTACTCCTCCC
31781 AGGCAAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.42, G:0.05, T:0.28
Consensus pattern (21 bp):
ACAATACTCTACTCCTCCCGG
Found at i:32059 original size:14 final size:14
Alignment explanation
Indices: 32042--32068 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32032 CATAAACAAT
32042 AAACCTTAAATTTG
1 AAACCTTAAATTTG
32056 AAACCTTAAATTT
1 AAACCTTAAATTT
32069 AAAATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.37
Consensus pattern (14 bp):
AAACCTTAAATTTG
Found at i:34928 original size:16 final size:16
Alignment explanation
Indices: 34907--34937 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34897 TTCAAAACTC
34907 ATAAAAATAATATAAA
1 ATAAAAATAATATAAA
*
34923 ATAAAATTAATATAA
1 ATAAAAATAATATAA
34938 TTAATCATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
ATAAAAATAATATAAA
Found at i:36801 original size:56 final size:56
Alignment explanation
Indices: 36741--36853 Score: 190
Period size: 56 Copynumber: 2.0 Consensus size: 56
36731 AAACATCAAA
* * *
36741 AAACCCTAAAAATCTTTTTATAGACATTTGGTGCCGTCATTTAAATTGACATCACT
1 AAACCCTAAAAATATTTCTATAGACATTTGGTGCCGCCATTTAAATTGACATCACT
*
36797 AAACCCTAAAAATATTTCTATAGACATTTGGTGCTGCCATTTAAATTGACATCACT
1 AAACCCTAAAAATATTTCTATAGACATTTGGTGCCGCCATTTAAATTGACATCACT
36853 A
1 A
36854 TTATTATTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (56 bp):
AAACCCTAAAAATATTTCTATAGACATTTGGTGCCGCCATTTAAATTGACATCACT
Found at i:37074 original size:35 final size:36
Alignment explanation
Indices: 37004--37076 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 36
36994 TATTTTAATT
*
37004 AAATTAATAATTTTTTAATATTACTTTAGTCAAATA
1 AAATAAATAATTTTTTAATATTACTTTAGTCAAATA
*
37040 AAATAAATAATTTTTGT-ATATTATTTTAGT-AAATA
1 AAATAAATAATTTTT-TAATATTACTTTAGTCAAATA
37075 AA
1 AA
37077 TATTTTTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
35 7 0.21
36 26 0.76
37 1 0.03
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.47
Consensus pattern (36 bp):
AAATAAATAATTTTTTAATATTACTTTAGTCAAATA
Found at i:37092 original size:29 final size:30
Alignment explanation
Indices: 37040--37101 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
37030 TAGTCAAATA
*
37040 AAATAAATAATTTTTGTATATTATTTTAGT
1 AAATAAATAATTTTTATATATTATTTTAGT
* *
37070 AAATAAAT-ATTTTTATATTTTATTTTGGT
1 AAATAAATAATTTTTATATATTATTTTAGT
37099 AAA
1 AAA
37102 AAACCAAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 21 0.72
30 8 0.28
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.53
Consensus pattern (30 bp):
AAATAAATAATTTTTATATATTATTTTAGT
Found at i:37467 original size:16 final size:17
Alignment explanation
Indices: 37432--37469 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
37422 TAAACATACC
37432 ATTTTAATAATAATATT
1 ATTTTAATAATAATATT
* *
37449 ATTTTGATAATTA-ATT
1 ATTTTAATAATAATATT
37465 ATTTT
1 ATTTT
37470 TTATATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
ATTTTAATAATAATATT
Found at i:42711 original size:27 final size:26
Alignment explanation
Indices: 42674--42726 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
42664 CTGTTCCTTG
*
42674 GAATTTTCAGCACCTTCACATAAGCA
1 GAATTTTCAGCACCTACACATAAGCA
*
42700 GAATCTTTCAGCACCTACATATAAGCA
1 GAAT-TTTCAGCACCTACACATAAGCA
42727 TGAACGCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.26
Consensus pattern (26 bp):
GAATTTTCAGCACCTACACATAAGCA
Found at i:58105 original size:29 final size:29
Alignment explanation
Indices: 58050--58116 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
58040 ATAGTGATTG
* * *
58050 GATCAAATTAATATTTTTATCATTAAATA
1 GATCAAATTAATATTTATATCAGTAAAAA
* *
58079 GATCAATTTAATATTTATATTAGTAAAAA
1 GATCAAATTAATATTTATATCAGTAAAAA
58108 GAATCAAAT
1 G-ATCAAAT
58117 AAGTTTAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
29 25 0.81
30 6 0.19
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.40
Consensus pattern (29 bp):
GATCAAATTAATATTTATATCAGTAAAAA
Found at i:59699 original size:2 final size:2
Alignment explanation
Indices: 59692--59716 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
59682 TGAGAAGCTA
59692 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
59717 AATTTTAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:75234 original size:16 final size:16
Alignment explanation
Indices: 75213--75256 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
75203 TAAAAAAATT
*
75213 ACAAAAACTTGTTTCA
1 ACAAAATCTTGTTTCA
75229 ACAAAATCTTGTTTCA
1 ACAAAATCTTGTTTCA
75245 ACAAAATCTTGT
1 ACAAAATCTTGT
75257 AATTAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (16 bp):
ACAAAATCTTGTTTCA
Found at i:78186 original size:17 final size:17
Alignment explanation
Indices: 78161--78193 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
78151 ATTTAAATTT
*
78161 GAAATTAAAAAGATAAA
1 GAAAGTAAAAAGATAAA
78178 GAAAGTAAAAAGATAA
1 GAAAGTAAAAAGATAA
78194 TTCTTTCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (17 bp):
GAAAGTAAAAAGATAAA
Found at i:78972 original size:16 final size:16
Alignment explanation
Indices: 78944--79002 Score: 52
Period size: 16 Copynumber: 3.7 Consensus size: 16
78934 ACTATATAAA
78944 AAATATATAAAATTATT
1 AAATAT-TAAAATTATT
*
78961 AAATATTAAAA-TAAT
1 AAATATTAAAATTATT
*
78976 ATAATA-TAAATATTTTT
1 A-AATATTAAA-ATTATT
78993 AAA-ATTAAAA
1 AAATATTAAAA
79003 AATAATGTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
15 10 0.29
16 16 0.46
17 9 0.26
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AAATATTAAAATTATT
Found at i:78982 original size:33 final size:30
Alignment explanation
Indices: 78945--79006 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 30
78935 CTATATAAAA
78945 AATATATAAAATTATTAAATATTAAAATAATAT
1 AATATA-AAAATTATTAAA-ATTAAAA-AATAT
* *
78978 AATATAAATATTTTTAAAATTAAAAAATA
1 AATATAAAAATTATTAAAATTAAAAAATA
79007 ATGTGGGCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 4 0.15
31 7 0.26
32 10 0.37
33 6 0.22
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (30 bp):
AATATAAAAATTATTAAAATTAAAAAATAT
Found at i:79000 original size:31 final size:30
Alignment explanation
Indices: 78941--79006 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 30
78931 TCGACTATAT
78941 AAAAA-AT-ATATAAAATTATTAAATATTA
1 AAAAATATAATATAAAATTATTAAATATTA
*
78969 AAATAATATAATATAAATATTTTTAAA-ATTA
1 AAA-AATATAATATAAA-ATTATTAAATATTA
79000 AAAAATA
1 AAAAATA
79007 ATGTGGGCAG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
28 3 0.09
29 2 0.06
30 6 0.18
31 14 0.42
32 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (30 bp):
AAAAATATAATATAAAATTATTAAATATTA
Found at i:79008 original size:33 final size:31
Alignment explanation
Indices: 78948--79006 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
78938 TATAAAAAAT
78948 ATATAAAATTATTAAATATTAAAATAATATA
1 ATATAAAATTATTAAATATTAAAATAATATA
*
78979 ATATAAATATTTTTAAA-ATTAAAA-AATA
1 ATATAAA-ATTATTAAATATTAAAATAATA
79007 ATGTGGGCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 4 0.15
31 14 0.54
32 8 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (31 bp):
ATATAAAATTATTAAATATTAAAATAATATA
Found at i:84173 original size:16 final size:17
Alignment explanation
Indices: 84152--84185 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
84142 CCTAAAGGAG
84152 TTAACC-GTTTCTTTCT
1 TTAACCAGTTTCTTTCT
*
84168 TTAACCAGTTTGTTTCT
1 TTAACCAGTTTCTTTCT
84185 T
1 T
84186 GCTTCGTCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.21, G:0.09, T:0.56
Consensus pattern (17 bp):
TTAACCAGTTTCTTTCT
Found at i:90116 original size:3 final size:3
Alignment explanation
Indices: 90110--90149 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
90100 GAAGTAGTAG
*
90110 TAA TAA TAA TAA TAA TAA TAA -AA TAA CAA -AA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
90150 CTTTTACCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
2 4 0.12
3 30 0.88
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:95238 original size:5 final size:5
Alignment explanation
Indices: 95225--95259 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
95215 GCCTTTATTT
* *
95225 TGGGT TGGGG TGGGG TGGGG TGGGG TGTGG TGGGG
1 TGGGG TGGGG TGGGG TGGGG TGGGG TGGGG TGGGG
95260 GGAAAATCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.74, T:0.26
Consensus pattern (5 bp):
TGGGG
Found at i:95672 original size:21 final size:21
Alignment explanation
Indices: 95648--95693 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
95638 GGGGGAGGGA
* * *
95648 TTTCGTTATTTTGCTTCGTGT
1 TTTCGTCACTTTGCTTCATGT
*
95669 TTTCGTCGCTTTGCTTCATGT
1 TTTCGTCACTTTGCTTCATGT
95690 TTTC
1 TTTC
95694 ATCCTTCATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.04, C:0.20, G:0.17, T:0.59
Consensus pattern (21 bp):
TTTCGTCACTTTGCTTCATGT
Found at i:98368 original size:5 final size:5
Alignment explanation
Indices: 98349--98397 Score: 62
Period size: 5 Copynumber: 9.4 Consensus size: 5
98339 TCGTGAGTGG
* *
98349 GATGG GATGA CGATGA GATGA GATGA GATGA GATGA GAGTGA GACGA GA
1 GATGA GATGA -GATGA GATGA GATGA GATGA GATGA GA-TGA GATGA GA
98398 CGATGAACAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
5 30 0.75
6 10 0.25
ACGTcount: A:0.37, C:0.04, G:0.43, T:0.16
Consensus pattern (5 bp):
GATGA
Found at i:102251 original size:24 final size:24
Alignment explanation
Indices: 102193--102254 Score: 106
Period size: 24 Copynumber: 2.6 Consensus size: 24
102183 GTCAGAGAAC
*
102193 ATACGTTTATACTCGTCAGCCACT
1 ATACGTTTATGCTCGTCAGCCACT
*
102217 ATACGTTTATGCTCGTCAGTCACT
1 ATACGTTTATGCTCGTCAGCCACT
102241 ATACGTTTATGCTC
1 ATACGTTTATGCTC
102255 ACAAATTAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.37
Consensus pattern (24 bp):
ATACGTTTATGCTCGTCAGCCACT
Found at i:117224 original size:50 final size:51
Alignment explanation
Indices: 117163--117384 Score: 222
Period size: 51 Copynumber: 4.4 Consensus size: 51
117153 TTAAATTCTA
*
117163 ACTAAGTGTCATCGTGAGTAAAT-AATCCTTTACGGATTAAAAGTCTGATG
1 ACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAAGTCCGATG
* *
117213 ACTAAGTGTCATCTTGAGTAAATGAATCATTTACGGATTAAAAGTCCGATG
1 ACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAAGTCCGATG
* * * * *
117264 ACTAAGTGACATCGTGAGTAAATGAATCCATGATGGA-TAAAGGTCCGATG
1 ACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAAGTCCGATG
* ** * * ** *
117314 ACTCCA-TGTCATTATGAGT--ATGAATTCCTATATGGAACAAGAGGTCCGATG
1 ACT-AAGTGTCATCGTGAGTAAATGAA-TCCTTTACGGATTAA-AAGTCCGATG
117365 ACTATA-TGTCATCGTGAGTA
1 ACTA-AGTGTCATCGTGAGTA
117385 TTAAATGAAA
Statistics
Matches: 144, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
48 5 0.03
49 8 0.06
50 49 0.34
51 82 0.57
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.30
Consensus pattern (51 bp):
ACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAAAGTCCGATG
Found at i:118516 original size:49 final size:49
Alignment explanation
Indices: 118439--118567 Score: 141
Period size: 49 Copynumber: 2.6 Consensus size: 49
118429 ATGAAACTTG
* * * * *
118439 AACCTGTGACCGTATAACTATCGTCAACTGGGGGCCCGAATTATACCTC
1 AACCCGTGACCGTATAACCACCGTCAACTGGGAGCCCGAATTATACCTA
* * * * *
118488 AACTCGTGACCGTATAACCACCGTCAACTAGGAGCCCTAGTTATACTTA
1 AACCCGTGACCGTATAACCACCGTCAACTGGGAGCCCGAATTATACCTA
* * *
118537 AACCCGTAACTGTATAACCACTGTCAACTGG
1 AACCCGTGACCGTATAACCACCGTCAACTGG
118568 AAGTCTGAAT
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
49 65 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (49 bp):
AACCCGTGACCGTATAACCACCGTCAACTGGGAGCCCGAATTATACCTA
Done.